BER Structural Biology and Imaging Resources
Synchrotron, Neutron, and Cryo-EM
U.S. Department of Energy | Biological and Environmental Research Program


2017Agrawal, Ankit, Robert W. Johns and Delia J. MillironControl of Localized Surface Plasmon Resonances in Metal Oxide NanocrystalsAnnual Review of Materials Research47131-Jan10.1146/annurev-matsci-070616-124259
2020Agtuca, B. J., S. A. Stopka, S. Evans, L. Samarah, Y. Liu, D. Xu, M. G. Stacey, D. W. Koppenaal, L. Pasa-Tolic, C. R. Anderton, A. Vertes and G. StaceyMetabolomic profiling of wild-type and mutant soybean root nodules using laser-ablation electrospray ionization mass spectrometry reveals altered metabolismPlant J10351937-195810.1111/tpj.14815
2019Agtuca, Beverly J. Stopka, Sylwia A. Tuleski, Thalita R. do Amaral, Fernanda P. Evans, Sterling Liu, Yang Xu, Dong Monteiro, Rose Adele Koppenaal, David W. Paša-Tolić, Ljiljana Anderton, Christopher R. Vertes, Akos Stacey, GaryIn-Situ Metabolomic Analysis of Setaria viridis Roots Colonized by Beneficial Endophytic BacteriaMolecular Plant-Microbe Interactions®332272-28310.1094/MPMI-06-19-0174-R
2020Alterman, J. L., D. X. Vang, M. R. Stroud, L. J. Halverson and G. A. KrausOzonolysis of Alkynes-A Flexible Route to Alpha-Diketones: Synthesis of AI-2Org Lett22197424-742610.1021/acs.orglett.0c02182
2020Apra, E., A. Bhattarai, E. Baxter, S. Wang, G. E. Johnson, N. Govind and P. Z. El-KhourySimplified Ab Initio Molecular Dynamics-Based Raman Spectral SimulationsAppl Spectrosc74111350-135710.1177/0003702820923392
2018Apra, E., A. Bhattarai, K. T. Crampton, E. J. Bylaska, N. Govind, W. P. Hess and P. Z. El-KhouryTime Domain Simulations of Single Molecule Raman ScatteringJ Phys Chem A122377437-744210.1021/acs.jpca.8b05912
2019Au - Harris, Susanna L., Cesar A. Au - Pelaez and Elizabeth A. Au - ShankMonitoring Bacterial Colonization and Maintenance on Arabidopsis thaliana Roots in a Floating Hydroponic SystemJoVE147e5951710.3791/59517
2016Banerjee, S., L. R. Garcia and W. K. VersawQuantitative Imaging of FRET-Based Biosensors for Cell- and Organelle-Specific Analyses in PlantsMicrosc Microanal222300-1010.1017/s143192761600012x
2017Bao, Y., Y. Mugume and D. C. BasshamBiochemical Methods to Monitor Autophagic Responses in PlantsMethods Enzymol588497-51310.1016/bs.mie.2016.09.090
2016Barrero, Juan J., Effrosyni Papanikou, Jason C. Casler, Kasey J. Day and Benjamin S. GlickAn improved reversibly dimerizing mutant of the FK506-binding protein FKBPCellular Logistics63e120484810.1080/21592799.2016.1204848
2020Bhattarai, A., Z. Cheng, A. G. Joly, I. V. Novikova, J. E. Evans, Z. D. Schultz, M. R. Jones and P. Z. El-KhouryTip-Enhanced Raman Nanospectroscopy of Smooth Spherical Gold NanoparticlesJ Phys Chem Lett1151795-180110.1021/acs.jpclett.0c00217
2018Bhattarai, A., K. T. Crampton, A. G. Joly, L. Kovarik, W. P. Hess and P. Z. El-KhouryImaging the Optical Fields of Functionalized Silver Nanowires through Molecular TERSJ Phys Chem Lett9247105-710910.1021/acs.jpclett.8b03324
2020Bhattarai, A., K. T. Crampton, A. G. Joly, C. F. Wang, Z. D. Schultz and P. Z. El-KhouryA Closer Look at Corrugated Au TipsJ Phys Chem Lett1151915-192010.1021/acs.jpclett.0c00305
2017Bhattarai, A. and P. Z. El-KhouryImaging localized electric fields with nanometer precision through tip-enhanced Raman scatteringChem Commun (Camb)53537310-731310.1039/c7cc02593a
2019Bhattarai, A. and P. Z. El-KhouryNanoscale Chemical Reaction Imaging at the Solid-Liquid Interface via TERSJ Phys Chem Lett10112817-282210.1021/acs.jpclett.9b00935
2017Bhattarai, A., A. G. Joly, W. P. Hess and P. Z. El-KhouryVisualizing Electric Fields at Au(111) Step Edges via Tip-Enhanced Raman ScatteringNano Lett17117131-713710.1021/acs.nanolett.7b04027
2019Bhattarai, Ashish, Alan G. Joly, Andrey Krayev and Patrick Z. El-KhouryTaking the Plunge: Nanoscale Chemical Imaging of Functionalized Gold Triangles in H2O via TERSThe Journal of Physical Chemistry C123127376-738010.1021/acs.jpcc.9b00867
2018Bhattarai, A., A. Krayev, A. Temiryazev, D. Evplov, K. T. Crampton, W. P. Hess and P. Z. El-KhouryTip-Enhanced Raman Scattering from Nanopatterned Graphene and Graphene OxideNano Lett1864029-403310.1021/acs.nanolett.8b01690
2019Bhattarai, Ashish, Irina V. Novikova and Patrick Z. El-KhouryTip-Enhanced Raman Nanographs of Plasmonic Silver NanoparticlesThe Journal of Physical Chemistry C1234527765-2776910.1021/acs.jpcc.9b07811
2020Bhattarai, A., B. T. O'Callahan, C. F. Wang, S. Wang and P. Z. El-KhourySpatio-Spectral Characterization of Multipolar Plasmonic Modes of Au Nanorods via Tip-Enhanced Raman ScatteringJ Phys Chem Lett1182870-287410.1021/acs.jpclett.0c00485
2016Boutet, S., A. Cohen and S. WakatsukiThe New Macromolecular Femtosecond Crystallography (MFX) Instrument at LCLSSynchrotron Radiat News29123-2810.1080/08940886.2016.1124681
2020Bryant, R. N., C. Jones, M. R. Raven, J. D. Owens and D. A. FikeShifting modes of iron sulfidization at the onset of OAE-2 drive regional shifts in pyrite ?34S recordsChemical Geology55310.1016/j.chemgeo.2020.119808
2018Burkhow, S. J., N. M. Stephens, Y. Mei, M. E. Duenas, D. J. Freppon, G. Ding, S. C. Smith, Y. J. Lee, B. J. Nikolau, S. A. Whitham and E. A. SmithCharacterizing virus-induced gene silencing at the cellular level with in situ multimodal imagingPlant Methods143710.1186/s13007-018-0306-7
2020Cahill, John F., Muneeba Khalid, Scott T. Retterer, Courtney L. Walton and Vilmos KerteszIn Situ Chemical Monitoring and Imaging of Contents within Microfluidic Devices Having a Porous Membrane Wall Using Liquid Microjunction Surface Sampling Probe Mass SpectrometryJournal of the American Society for Mass Spectrometry314832-83910.1021/jasms.9b00093
2021Chacko, J. V., H. N. Lee, W. Wu, M. S. Otegui and K. W. EliceiriHyperdimensional Imaging Contrast Using an Optical FiberSensors (Basel)21410.3390/s21041201
2021Chundawat, S. P. S., B. Nemmaru, M. Hackl, S. K. Brady, M. A. Hilton, M. M. Johnson, S. Chang, M. J. Lang, H. Huh, S. H. Lee, J. M. Yarbrough, C. A. Lopez and S. GnanakaranMolecular origins of reduced activity and binding commitment of processive cellulases and associated carbohydrate-binding proteins to cellulose IIIJ Biol Chem10043110.1016/j.jbc.2021.100431
2019Comerci, C. J., J. Herrmann, J. Yoon, F. Jabbarpour, X. Zhou, J. F. Nomellini, J. Smit, L. Shapiro, S. Wakatsuki and W. E. MoernerTopologically-guided continuous protein crystallization controls bacterial surface layer self-assemblyNat Commun101273110.1038/s41467-019-10650-x
2016Cossairt, O., K. He, R. Shang, N. Matsuda, M. Sharma, X. Huang, A. Katsaggelos, L. Spinoulas and S. YooCompressive reconstruction for 3D incoherent holographic microscopyConference Proceedings
2019Crawford, B. M., P. Strobbia, H. N. Wang, R. Zentella, M. I. Boyanov, Z. M. Pei, T. P. Sun, K. M. Kemner and T. Vo-DinhPlasmonic Nanoprobes for in Vivo Multimodal Sensing and Bioimaging of MicroRNA within PlantsACS Appl Mater Interfaces1187743-775410.1021/acsami.8b19977
2020Crawford, Bridget M., Hsin-Neng Wang, Pietro Strobbia, Rodolfo Zentella, Zhen-Ming Pei, Tai-ping Sun and Tuan Vo-DinhPlasmonic Nanobiosensing: from in situ plant monitoring to cancer diagnostics at the point of careJournal of Physics: Photonics2310.1088/2515-7647/ab9714
2020Cupil‐Garcia, Vanessa Strobbia, Pietro Crawford, Bridget M. Wang, Hsin‐Neng Ngo, Hoan Liu, Yang Vo‐Dinh, TuanPlasmonic nanoplatforms: From surface?enhanced Raman scattering sensing to biomedical applicationsJournal of Raman Spectroscopy522541-55310.1002/jrs.6056
2021D. Wang, L. Poyneer, D. Chen, S. Ly, T. Laurence, J. Lee, M. Ammons, P. K. WeberAdaptive optics for imaging through soil mineralsConference Paper11652-410.1117/12.2576583
2021Dahlgren, K. K., C. Gates, T. Lee and J. C. CameronProximity-based proteomics reveals the thylakoid lumen proteome in the cyanobacterium Synechococcus sp. PCC 7002Photosynth Res1472177-19510.1007/s11120-020-00806-y
2017Day, K. J., P. J. La Riviere, T. Chandler, V. P. Bindokas, N. J. Ferrier and B. S. GlickImproved deconvolution of very weak confocal signalsF1000Res678710.12688/f1000research.11773.2
2018De Silva Indrasekara, A. S., S. F. Johnson, R. A. Odion and T. Vo-DinhManipulation of the Geometry and Modulation of the Optical Response of Surfactant-Free Gold Nanostars: A Systematic Bottom-Up SynthesisACS Omega322202-221010.1021/acsomega.7b01700
2018De Silva Indrasekara, A. S., S. J. Norton, N. K. Geitner, B. M. Crawford, M. R. Wiesner and T. Vo-DinhTailoring the Core-Satellite Nanoassembly Architectures by Tuning Internanoparticle Electrostatic InteractionsLangmuir344814617-1462310.1021/acs.langmuir.8b02792
2020Ding, Shi-You and Edward A. BayerUnderstanding Cellulosome Interaction with Cellulose by High-Resolution ImagingACS Central Science671034-103610.1021/acscentsci.0c00662
2021Do, H., S. R. Kwon, S. Baek, C. S. Madukoma, M. K. Smiley, L. E. Dietrich, J. D. Shrout and P. W. BohnRedox cycling-based detection of phenazine metabolites secreted from Pseudomonas aeruginosa in nanopore electrode arraysAnalyst14641346-135410.1039/d0an02022b
2019Do, H., S. R. Kwon, K. Fu, N. Morales-Soto, J. D. Shrout and P. W. BohnElectrochemical Surface-Enhanced Raman Spectroscopy of Pyocyanin Secreted by Pseudomonas aeruginosa CommunitiesLangmuir35217043-704910.1021/acs.langmuir.9b00184
2020Doughty, B., U. I. Premadasa, J. F. Cahill, A. B. Webb, J. L. Morrell-Falvey, M. Khalid, S. T. Retterer and Y. Z. MaTotal internal reflection enabled wide-field coherent anti-Stokes Raman scattering microscopyOpt Lett45113087-309010.1364/ol.45.003087
2018Dueñas, M. E., A. D. Feenstra, A. R. Korte, P. Hinners and Y. J. LeeCellular and Subcellular Level Localization of Maize Lipids and Metabolites Using High-Spatial Resolution MALDI Mass Spectrometry ImagingMethods Mol Biol1676217-23110.1007/978-1-4939-7315-6_13
2017Dueñas, Maria Emilia, Adam T. Klein, Liza E. Alexander, Marna D. Yandeau-Nelson, Basil J. Nikolau and Young Jin LeeHigh spatial resolution mass spectrometry imaging reveals the genetically programmed, developmental modification of the distribution of thylakoid membrane lipids among individual cells of maize leafThe Plant Journal894825-838
2020Eckshtain-Levi, Noam, Susanna Leigh Harris, Reizo Quilat Roscios and Elizabeth Anne ShankBacterial Community Members Increase Bacillus subtilis Maintenance on the Roots of Arabidopsis thalianaPhytobiomes Journal44303-31310.1094/PBIOMES-02-20-0019-R
2015Fales, A. M., S. J. Norton, B. M. Crawford, B. G. DeLacy and T. Vo-DinhFano resonance in a gold nanosphere with a J-aggregate coatingPhys Chem Chem Phys173824931-610.1039/c5cp03277f
2021Ferrer-Gonzalez, E., H. Huh, H. M. Al-Tameemi, J. M. Boyd, S. H. Lee and D. S. PilchImpact of FtsZ Inhibition on the Localization of the Penicillin Binding Proteins in Methicillin-Resistant Staphylococcus aureusJ Bacteriol10.1128/JB.00204-21
2017Fincher, J. A., A. R. Korte, B. Reschke, N. J. Morris, M. J. Powell and A. VertesEnhanced sensitivity and metabolite coverage with remote laser ablation electrospray ionization-mass spectrometry aided by coaxial plume and gas dynamicsAnalyst142173157-316410.1039/c7an00805h
2017Floyd, B. E., Y. Mugume, S. C. Morriss, G. C. MacIntosh and D. C. BasshamLocalization of RNS2 ribonuclease to the vacuole is required for its role in cellular homeostasisPlanta2454779-79210.1007/s00425-016-2644-x
2021Gabel, M., B. T. O'Callahan, C. Groome, C. F. Wang, R. Ragan, Y. Gu and P. Z. El-KhouryMapping Molecular Adsorption Configurations with <5 nm Spatial Resolution through Ambient Tip-Enhanced Raman ImagingJ Phys Chem Lett12143586-359010.1021/acs.jpclett.1c00661
2020Gao, D., P. R. Barber, J. V. Chacko, M. A. Kader Sagar, C. T. Rueden, A. R. Grislis, M. C. Hiner and K. W. EliceiriFLIMJ: An open-source ImageJ toolkit for fluorescence lifetime image data analysisPLoS One1512e023832710.1371/journal.pone.0238327
2018Gdor, Itay, Xiaolei Wang, Matthew Daddysman, Yuval Yifat, Rosemarie Wilton, Mark Hereld, Marie-Françoise Noirot-Gros and Norbert F. SchererParticle tracking by repetitive phase-shift interferometric super resolution microscopyOptics Letters43122819-282210.1364/OL.43.002819
2017Gilbert Corder, Stephanie N., Jianjuan Jiang, Xinzhong Chen, Salinporn Kittiwatanakul, I. Cheng Tung, Yi Zhu, Jiawei Zhang, Hans A. Bechtel, Michael C. Martin, G. Lawrence Carr, Jiwei Lu, Stuart A. Wolf, Haidan Wen, Tiger H. Tao and Mengkun LiuControlling phase separation in vanadium dioxide thin films via substrate engineeringPhysical Review B961616111010.1103/PhysRevB.96.161110
2019Guzman, M. S., K. Rengasamy, M. M. Binkley, C. Jones, T. O. Ranaivoarisoa, R. Singh, D. A. Fike, J. M. Meacham and A. BosePhototrophic extracellular electron uptake is linked to carbon dioxide fixation in the bacterium Rhodopseudomonas palustrisNat Commun101135510.1038/s41467-019-09377-6
2021Haviland, Zachary K., Daguan Nong, Kate L. Vasquez Kuntz, Thomas J. Starr, Dengbo Ma, Ming Tien, Charles T. Anderson and William O. HancockNanoscale Dynamics of Cellulase TrCel7A Digesting CellulosebioRxiv2021.02.18.43189110.1101/2021.02.18.431891
2018He, Kuan, Xiang Huang, Xiaolei Wang, Seunghwan Yoo, Pablo Ruiz, Itay Gdor, Nicola J. Ferrier, Norbert Scherer, Mark Hereld, Aggelos K. Katsaggelos and Oliver CossairtDesign and simulation of a snapshot multi-focal interferometric microscopeOptics Express262127381-2740210.1364/OE.26.027381
2020He, Kuan, Xiaolei Wang, Zihao W. Wang, Hannah Yi, Norbert F. Scherer, Aggelos K. Katsaggelos and Oliver CossairtSnapshot multifocal light field microscopyOptics Express28812108-1212010.1364/OE.390719
2018He, Kuan, Zihao Wang, Xiang Huang, Xiaolei Wang, Seunghwan Yoo, Pablo Ruiz, Itay Gdor, Alan Selewa, Nicola J. Ferrier, Norbert Scherer, Mark Hereld, Aggelos K. Katsaggelos and Oliver CossairtComputational multifocal microscopyBiomedical optics express9126477-649610.1364/BOE.9.006477
2017Herrmann, J., F. Jabbarpour, P. G. Bargar, J. F. Nomellini, P. N. Li, T. J. Lane, T. M. Weiss, J. Smit, L. Shapiro and S. WakatsukiEnvironmental Calcium Controls Alternate Physical States of the Caulobacter Surface LayerBiophys J11291841-185110.1016/j.bpj.2017.04.003
2020Herrmann, J., P. N. Li, F. Jabbarpour, A. C. K. Chan, I. Rajkovic, T. Matsui, L. Shapiro, J. Smit, T. M. Weiss, M. E. P. Murphy and S. WakatsukiA bacterial surface layer protein exploits multistep crystallization for rapid self-assemblyProc Natl Acad Sci U S A1171388-39410.1073/pnas.1909798116
2020Hill, N. C., J. W. Tay, S. Altus, D. M. Bortz and J. C. CameronLife cycle of a cyanobacterial carboxysomeSci Adv619eaba126910.1126/sciadv.aba1269
2020Houghton, J. L., C. Jones, K. S. Dawson, V. J. Orphan, M. L. Gomes and D. A. FikeResolving micron-scale heterogeneity in porewater ?34SH2S by combining films for in-situ sulfide capture and secondary ion mass spectrometryMarine Chemistry22310.1016/j.marchem.2020.103810
2018Huang, X., K. He, S. Yoo, O. Cossairt, A. Katsaggelos, N. Ferrier and M. HereldAn Interior Point Method for Nonnegative Sparse Signal ReconstructionConference Proceedings
2016Hunter, Mark S., Chun Hong Yoon, Hasan DeMirci, Raymond G. Sierra, E. Han Dao, Radman Ahmadi, Fulya Aksit, Andrew L. Aquila, Halilibrahim Ciftci, Serge Guillet, Matt J. Hayes, Thomas J. Lane, Meng Liang, Ulf Lundström, Jason E. Koglin, Paul Mgbam, Yashas Rao, Lindsey Zhang, Soichi Wakatsuki, James M. Holton and Sébastien BoutetSelenium single-wavelength anomalous diffraction de novo phasing using an X-ray-free electron laserNature Communications711338810.1038/ncomms13388
2021Hurley, S. J., B. A. Wing, C. E. Jasper, N. C. Hill and J. C. CameronCarbon isotope evidence for the global physiology of Proterozoic cyanobacteriaSci Adv7210.1126/sciadv.abc8998
2017Huynh, Toan, Matthew K. Daddysman, Ying Bao, Alan Selewa, Andrey Kuznetsov, Louis H. Philipson and Norbert F. SchererCorrelative imaging across microscopy platforms using the fast and accurate relocation of microscopic experimental regions (FARMER) methodReview of Scientific Instruments8855370210.1063/1.4982818
2018Ishii, H. A., J. P. Bradley, H. A. Bechtel, D. E. Brownlee, K. C. Bustillo, J. Ciston, J. N. Cuzzi, C. Floss and D. J. JoswiakMultiple generations of grain aggregation in different environments preceded solar system body formationProc Natl Acad Sci U S A115266608-661310.1073/pnas.1720167115
2018Itay, Gdor, Yoo Seunghwan, Wang Xiaolei, Daddysman Matthew, Wilton Rosemarie, Ferrier Nicola, Hereld Mark, Cossairt Oliver, Katsaggelos Aggelos and F. Scherer NorbertParticle tracking and extended object imaging by interferometric super resolution microscopyConference Proceedings
2019Jiang, Z., X. Zhou, M. Tao, F. Yuan, L. Liu, F. Wu, X. Wu, Y. Xiang, Y. Niu, F. Liu, C. Li, R. Ye, B. Byeon, Y. Xue, H. Zhao, H. N. Wang, B. M. Crawford, D. M. Johnson, C. Hu, C. Pei, W. Zhou, G. B. Swift, H. Zhang, T. Vo-Dinh, Z. Hu, J. N. Siedow and Z. M. PeiPlant cell-surface GIPC sphingolipids sense salt to trigger Ca(2+) influxNature5727769341-34610.1038/s41586-019-1449-z
2019Johnson, Samuel C., Eric A. Muller, Omar Khatib, Elisa A. Bonnin, Alexander C. Gagnon and Markus B. RaschkeInfrared nanospectroscopic imaging in the rotating frameOptica6410.1364/optica.6.000424
2021Jones, C. and D. A. FikeA statistical model of secondary ion emission and attenuation clarifies disparities in quasi-simultaneous arrival coefficients measured with secondary ion mass spectrometryRapid Commun Mass Spectrom351e895810.1002/rcm.8958
2017Kang, J. H., S. Wang, Z. Shi, W. Zhao, E. Yablonovitch and F. WangGoos-Hänchen Shift and Even-Odd Peak Oscillations in Edge-Reflections of Surface Polaritons in Atomically Thin CrystalsNano Lett1731768-177410.1021/acs.nanolett.6b05077
2017Kemner, K. M., M. Hereld, N. Scherer, A. Selewa, X. Wang, I. Gdor, M. Daddysman, J. Jureller, T. Huynh, O. Cossairt, A. Katsaggelos, K. He, S. Yoo, N. Matsuda, B. Glick, P. La Riviere, J. Austin, K. Day, T. Chandler, S. Papanikou, N. Ferrier, D. Sholto-Douglas, D. Gursoy, O. Antipova, C. Soriano, S. O'Brien, R. Wilton, A. Ahrendt, M. Asplund, S. Zerbs, P. Noirot, C. Atkins, G. Babnigg, J. Johnson, S. Shinde, P. Korajczyk and M. F. NoirotIntegrated Dynamic 3D Imaging of Microbial Processes and Communities in Rhizosphere Environments: The Argonne Small Worlds ProjectMicroscopy and Microanalysis23S1340-34110.1017/S1431927617002380
2021Kertesz, Vilmos and John F. CahillSpatially resolved absolute quantitation in thin tissue by mass spectrometryAnalytical and Bioanalytical Chemistry413102619-263610.1007/s00216-020-02964-3
2021Kertesz, V., J. F. Cahill, B. R. Srijanto, C. P. Collier, M. Vavrek and B. ChenAbsolute quantitation of propranolol from 200-?m regions of mouse brain and liver thin tissues using laser ablation-dropletProbe-mass spectrometryRapid Commun Mass Spectrom355e901010.1002/rcm.9010
2020Krayev, Andrey Krylyuk, Sergiy Ilic, Robert Hight Walker, Angela R. Bhattarai, Ashish Joly, Alan G. Velický, Matěj Davydov, Albert V. El-Khoury, Patrick Z.Comparable Enhancement of TERS Signals from WSe2 on Chromium and GoldThe Journal of Physical Chemistry C124168971-897710.1021/acs.jpcc.0c01298
2020Kumar Singh, Avinash, Sadie J. Burkhow, Chamari Wijesooriya, Brett W. Boote, Jacob W. Petrich and Emily A. SmithInorganic Semiconductor Quantum Dots as a Saturated Excitation (SAX) Probe for Sub?Diffraction ImagingChemPhotoChem53253-25910.1002/cptc.202000195
2021Kumar Singh, Avinash, Sadie J. Burkhow, Chamari Wijesooriya, Brett W. Boote, Jacob W. Petrich and Emily A. SmithInorganic Semiconductor Quantum Dots as a Saturated Excitation (SAX) Probe for Sub-Diffraction ImagingChemPhotoChem53253-259
2021Lee, J., S. S. Ly, T. A. Laurence, P. K. WeberLabel-free multiphoton nonlinear microspectroscopy imaging of microbial cells and organic matter in rhizosphere and soil mineralsConference Paper11655-2110.1117/12.2577311
2021Leggieri, P. A., Y. Liu, M. Hayes, B. Connors, S. Seppälä, M. A. O'Malley and O. S. VenturelliIntegrating Systems and Synthetic Biology to Understand and Engineer MicrobiomesAnnu Rev Biomed Eng10.1146/annurev-bioeng-082120-022836
2020Li, Po-Nan, Soichi Wakatsuki, Piero A. Pianetta and Yijin LiuHybrid real- and reciprocal-space full-field imaging with coherent illuminationJournal of Optics221110.1088/2040-8986/abbeca
2018Li, P. N., J. Herrmann, B. B. Tolar, F. Poitevin, R. Ramdasi, J. R. Bargar, D. A. Stahl, G. J. Jensen, C. A. Francis, S. Wakatsuki and H. van den BedemNutrient transport suggests an evolutionary basis for charged archaeal surface layer proteinsISME J12102389-240210.1038/s41396-018-0191-0
2019Li, P. N., J. Herrmann, S. Wakatsuki and H. van den BedemTransport Properties of Nanoporous, Chemically Forced Biological LatticesJ Phys Chem B1234910331-1034210.1021/acs.jpcb.9b05882
2017Li, Shaorui, Gianluigi Geronimo, Jack Fried, Donald Pinelli, Anthony Kuczewski, David Siddons, Banafsheh Beheshtipour, Richard Bohse and Henric KrawczynskiHEXID2: A Low-Power, Low-Noise Pixel Readout ASIC for Hyperspectral Energy-Resolving X-Ray Imaging Detectors4-Jan
2021Lillington, S. P., W. Chrisler, C. H. Haitjema, S. P. Gilmore, C. R. Smallwood, V. Shutthanandan, J. E. Evans and M. A. O'MalleyCellulosome Localization Patterns Vary across Life Stages of Anaerobic FungimBioe008322110.1128/mBio.00832-21
2018Liu, L., Z. Jiang, S. Zhang, H. Zhao, W. Yang, J. N. Siedow and Z. M. PeiBoth NaCl and H2O2 Long-Term Stresses Affect Basal Cytosolic Ca(2+) Levels but Only NaCl Alters Cytosolic Ca(2+) Signatures in ArabidopsisFront Plant Sci9139010.3389/fpls.2018.01390
2020Liu, S., H. Huh, S. H. Lee and F. HuangThree-Dimensional Single-Molecule Localization Microscopy in Whole-Cell and Tissue SpecimensAnnu Rev Biomed Eng22155-18410.1146/annurev-bioeng-060418-052203
2016Liu, X., K. Mao, A. Y. H. Yu, A. Omairi-Nasser, J. Austin, 2nd, B. S. Glick, C. K. Yip and D. J. KlionskyThe Atg17-Atg31-Atg29 Complex Coordinates with Atg11 to Recruit the Vam7 SNARE and Mediate Autophagosome-Vacuole FusionCurr Biol262150-16010.1016/j.cub.2015.11.054
2018Londono-Calderon, Alejandra, Wan Sun, Zengyi Shao, Daan Hein Alsem and Tanya ProzorovCorrelative Microbially-Assisted Imaging of Cellulose Deconstruction with Electron MicroscopyMicroscopy and Microanalysis24S1382-38310.1017/s1431927618002404
2018Ma, Chi, Oliver Tschauner, John R. Beckett, George R. Rossman, Clemens Prescher, Vitali B. Prakapenka, Hans A. Bechtel and Alastair MacDowellLiebermannite, KAlSi3O8, a new shock-metamorphic, high-pressure mineral from the Zagami Martian meteoriteMeteoritics & Planetary Science53150-61
2017Masson, Antoine, Jeremy T. O'Brien, Evan R. Williams and Hoi-Ying N. HolmanTowards Integrating Synchrotron FTIR Microscopy with Mass Spectrometry at the Berkeley Synchrotron Infrared Structural Biology (BSISB) ProgramSynchrotron Radiation News30417-2310.1080/08940886.2017.1338418
2020McClelland, H. L. O., C. Jones, L. M. Chubiz, D. A. Fike and A. S. BradleyDirect Observation of the Dynamics of Single-Cell Metabolic Activity during Microbial Diauxic GrowthmBio11210.1128/mBio.01519-19
2021Michalet, X.Continuous and discrete phasor analysis of binned or time-gated periodic decaysAIP Adv1133533110.1063/5.0027834
2021Michalet, X.An overview of continuous and discrete phasor analysis of binned or time-gated periodic decaysProc SPIE Int Soc Opt Eng1164810.1117/12.2577747
2019Moore, Kristin A., Jian Wei Tay and Jeffrey C. CameronDynamic Multigenerational Ploidy Landscape in Synechococcus sp. PCC 7002bioRxiv10.1101/661256
2016Ngo, H. T., H. N. Wang, A. M. Fales and T. Vo-DinhPlasmonic SERS biosensing nanochips for DNA detectionAnal Bioanal Chem40871773-8110.1007/s00216-015-9121-4
2018Noirot-Gros, Marie-Francoise, Shalaka Shinde, Peter E. Larsen, Sarah Zerbs, Peter J. Korajczyk, Kenneth M. Kemner and Philippe H. NoirotDynamics of Aspen Roots Colonization by Pseudomonads Reveals Strain-Specific and Mycorrhizal-Specific Patterns of Biofilm FormationFrontiers in Microbiology985310.3389/fmicb.2018.00853
2020Noirot-Gros, M. F., S. V. Shinde, C. Akins, J. L. Johnson, S. Zerbs, R. Wilton, K. M. Kemner, P. Noirot and G. BabniggFunctional Imaging of Microbial Interactions With Tree Roots Using a Microfluidics SetupFront Plant Sci1140810.3389/fpls.2020.00408
2017Novikova, Irina V., Chuck R. Smallwood, Yu Gong, Dehong Hu, Leif Hendricks, James E. Evans, Ashish Bhattarai, Wayne P. Hess and Patrick Z. El-KhouryMultimodal hyperspectral optical microscopyChemical Physics498-49925-3210.1016/j.chemphys.2017.08.011
2020O'Callahan, B. T., K. D. Park, I. V. Novikova, T. Jian, C. L. Chen, E. A. Muller, P. Z. El-Khoury, M. B. Raschke and A. S. LeaIn Liquid Infrared Scattering Scanning Near-Field Optical Microscopy for Chemical and Biological NanoimagingNano Lett2064497-450410.1021/acs.nanolett.0c01291
2020O'Callahan, Brian T., Ashish Bhattarai, Zachary D. Schultz and Patrick Z. El-KhouryPower-Dependent Dual Analyte Tip-Enhanced Raman Spectral ImagingThe Journal of Physical Chemistry C1242815454-1545910.1021/acs.jpcc.0c05396
2018O'Callahan, Brian T., Kevin T. Crampton, Irina V. Novikova, Tengyue Jian, Chun-Long Chen, James E. Evans, Markus B. Raschke, Patrick Z. El-Khoury and A. Scott LeaImaging Nanoscale Heterogeneity in Ultrathin Biomimetic and Biological CrystalsThe Journal of Physical Chemistry C1224324891-2489510.1021/acs.jpcc.8b06681
2019O'Callahan, Brian T., Mario Hentschel, Markus B. Raschke, Patrick Z. El-Khoury and A. Scott LeaUltrasensitive Tip- and Antenna-Enhanced Infrared Nanoscopy of Protein ComplexesThe Journal of Physical Chemistry C1232817505-1750910.1021/acs.jpcc.9b05777
2017Okumoto, S. and W. VersawGenetically encoded sensors for monitoring the transport and concentration of nitrogen-containing and phosphorus-containing molecules in plantsCurr Opin Plant Biol39129-13510.1016/j.pbi.2017.07.004
2021Otegui, Marisa S.Imaging Polyphenolic Compounds in Plant TissuesBook Section281-29510.1002/9781119545958.ch11
2015Papanikou, Effrosyni, Kasey J. Day, Jotham Austin, II and Benjamin S. GlickCOPI selectively drives maturation of the early GolgieLife4e1323210.7554/eLife.13232
2020Park, S. and S. Y. DingThe N-terminal zinc finger of CELLULOSE SYNTHASE6 is critical in defining its functional properties by determining the level of homodimerization in ArabidopsisPlant J10351826-183810.1111/tpj.14870
2019Park, S., B. Song, W. Shen and S. Y. DingA mutation in the catalytic domain of cellulose synthase 6 halts its transport to the Golgi apparatusJ Exp Bot70216071-608310.1093/jxb/erz369
2018Peterson, J. A., C. Wijesooriya, E. J. Gehrmann, K. M. Mahoney, P. P. Goswami, T. R. Albright, A. Syed, A. S. Dutton, E. A. Smith and A. H. WinterFamily of BODIPY Photocages Cleaved by Single Photons of Visible/Near-Infrared LightJ Am Chem Soc140237343-734610.1021/jacs.8b04040
2021Premadasa, Uvinduni I., Amber N. Bible, Jennifer L. Morrell-Falvey, Benjamin Doughty and Ying-Zhong MaSpatially co-registered wide-field nonlinear optical imaging of living and complex biosystems in a total internal reflection geometryAnalyst14693062-307210.1039/D1AN00129A
2017Pu, Y., J. Soto-Burgos and D. C. BasshamRegulation of autophagy through SnRK1 and TOR signaling pathwaysPlant Signal Behav1212e139512810.1080/15592324.2017.1395128
2019Ran, Yang, Pietro Strobbia, Vanessa Cupil-Garcia and Tuan Vo-DinhFiber-optrode SERS probes using plasmonic silver-coated gold nanostarsSensors and Actuators B: Chemical28795-10110.1016/j.snb.2019.01.167
2020Reem, N. T., L. Chambers, N. Zhang, S. F. Abdullah, Y. Chen, G. Feng, S. Gao, J. Soto-Burgos, G. Pogorelko, D. C. Bassham, C. T. Anderson, J. W. Walley and O. A. ZabotinaPost-Synthetic Reduction of Pectin Methylesterification Causes Morphological Abnormalities and Alterations to Stress Response in Arabidopsis thalianaPlants (Basel)91110.3390/plants9111558
2018Register, Janna, Martin Maiwald, Andrew Fales, Pietro Strobbia, Bernd Sumpf and Tuan Vo?DinhShifted?excitation Raman difference spectroscopy for the detection of SERS?encoded gold nanostar probesJournal of Raman Spectroscopy49121961-196710.1002/jrs.5482
2021Rowe, Annette R., Farshid Salimijazi, Leah Trutschel, Joshua Sackett, Oluwakemi Adesina, Isao Anzai, Liat H. Kugelmass, Michael H. Baym and Buz BarstowIdentification of a Pathway for Electron Uptake in <em>Shewanella oneidensis</em>bioRxiv2021.01.12.42641910.1101/2021.01.12.426419
2019Sagar, M. A. K., B. Dai, J. Chacko, J. Weber, A. Velten, S. Sanders, J. White and K. EliceiriOptical fiber-based dispersion for spectral discrimination in fluorescence lifetime imaging systemsJ Biomed Opt25117-Jan10.1117/1.JBO.25.1.014506
2020Sahu, A., S. Banerjee, A. S. Raju, T. J. Chiou, L. R. Garcia and W. K. VersawSpatial Profiles of Phosphate in Roots Indicate Developmental Control of Uptake, Recycling, and SequestrationPlant Physiol18442064-207710.1104/pp.20.01008
2020Salimijazi, Farshid, Jaehwan Kim, Alexa M. Schmitz, Richard Grenville, Andrew Bocarsly and Buz BarstowConstraints on the Efficiency of Engineered Electromicrobial ProductionJoule4102101-213010.1016/j.joule.2020.08.010
2020Samarah, Laith Z. Khattar, Rikkita Tran, Tina H. Stopka, Sylwia A. Brantner, Christine A. Parlanti, Paola Veličković, Dušan Shaw, Jared B. Agtuca, Beverly J. Stacey, Gary Paša-Tolić, Ljiljana Tolić, Nikola Anderton, Christopher R. Vertes, AkosSingle-Cell Metabolic Profiling: Metabolite Formulas from Isotopic Fine Structures in Heterogeneous Plant Cell PopulationsAnalytical Chemistry92107289-729810.1021/acs.analchem.0c00936
2020Samarah, Laith Z., Tina H. Tran, Gary Stacey and Akos VertesIn Vivo Chemical Analysis of Plant Sap from the Xylem and Single Parenchymal Cells by Capillary Microsampling Electrospray Ionization Mass SpectrometryAnalytical Chemistry92107299-730610.1021/acs.analchem.0c00939
2021Samarah, Laith Z., Tina H. Tran, Gary Stacey and Akos VertesMass Spectrometry Imaging of Bio-oligomer Polydispersity in Plant Tissues by Laser Desorption Ionization from Silicon Nanopost ArraysAngewandte Chemie International Edition60169071-907710.1002/anie.202015251
2019Santra, K., E. A. Smith, X. Song and J. W. PetrichA Bayesian Approach for Extracting Fluorescence Lifetimes from Sparse Data Sets and Its Significance for Imaging ExperimentsPhotochem Photobiol953773-77910.1111/php.13057
2021Saye, L. M. G., T. A. Navaratna, J. P. J. Chong, M. A. O'Malley, M. K. Theodorou and M. ReillyThe Anaerobic Fungi: Challenges and Opportunities for Industrial Lignocellulosic Biofuel ProductionMicroorganisms9410.3390/microorganisms9040694
2018Shank, E. A.Considering the Lives of Microbes in Microbial CommunitiesmSystems3210.1128/mSystems.00155-17
2020Sharma, Kriti, Márton Palatinszky, Georgi Nikolov, David Berry and Elizabeth A. ShankTransparent soil microcosms for live-cell imaging and non-destructive stable isotope probing of soil microorganismseLife9e5627510.7554/eLife.56275
2019Shen, Wei, Cynthia Collings, Muyang Li, Jake Markovicz, John Ralph, Shawn D. Mansfield and Shi-You DingImaging Changes in Cell Walls of Engineered Poplar by Stimulated Raman Scattering and Atomic Force MicroscopyACS Sustainable Chemistry & Engineering71210616-1062210.1021/acssuschemeng.9b01166
2018Shi, H. and P. YuAdvanced synchrotron-based and globar-sourced molecular (micro) spectroscopy contributions to advances in food and feed research on molecular structure, mycotoxin determination, and molecular nutritionCrit Rev Food Sci Nutr58132164-217510.1080/10408398.2017.1303769
2020Shuhui, Yin, M. Junaid Amin, T. Emerson Nyssa and Yang HawThree-dimensional super line-localization in low signal-to-noise microscope images via prior-apprised unsupervised learning (PAUL)Conference Proceedings
2020Siddons, D. P., A. J. Kuczewski, A. K. Rumaiz, R. Tappero, M. Idir, K. Nakhoda, J. Khanfri, V. Singh, E. R. Farquhar, M. Sullivan, D. Abel, D. J. Brady and X. YuanA coded aperture microscope for X-ray fluorescence full-field imagingJ Synchrotron Radiat27Pt 61703-170610.1107/S1600577520012308
2019Sierra, R. G., A. Batyuk, Z. Sun, A. Aquila, M. S. Hunter, T. J. Lane, M. Liang, C. H. Yoon, R. Alonso-Mori, R. Armenta, J. C. Castagna, M. Hollenbeck, T. O. Osier, M. Hayes, J. Aldrich, R. Curtis, J. E. Koglin, T. Rendahl, E. Rodriguez, S. Carbajo, S. Guillet, R. Paul, P. Hart, K. Nakahara, G. Carini, H. DeMirci, E. H. Dao, B. M. Hayes, Y. P. Rao, M. Chollet, Y. Feng, F. D. Fuller, C. Kupitz, T. Sato, M. H. Seaberg, S. Song, T. B. van Driel, H. Yavas, D. Zhu, A. E. Cohen, S. Wakatsuki and S. BoutetThe Macromolecular Femtosecond Crystallography Instrument at the Linac Coherent Light SourceJ Synchrotron Radiat26Pt 2346-35710.1107/S1600577519001577
2020Singh, A. K., K. Santra, X. Song, J. W. Petrich and E. A. SmithSpectral Narrowing Accompanies Enhanced Spatial Resolution in Saturated Coherent Anti-Stokes Raman Scattering (CARS): Comparisons of Experiment and TheoryJ Phys Chem A124214305-431310.1021/acs.jpca.0c02396
2020Song, B., S. Zhao, W. Shen, C. Collings and S. Y. DingDirect Measurement of Plant Cellulose Microfibril and Bundles in Native Cell WallsFront Plant Sci1147910.3389/fpls.2020.00479
2017Soto-Burgos, J. and D. C. BasshamSnRK1 activates autophagy via the TOR signaling pathway in Arabidopsis thalianaPLoS One128e018259110.1371/journal.pone.0182591
2019Stoffel, G. M. M., D. A. Saez, H. DeMirci, B. Vogeli, Y. Rao, J. Zarzycki, Y. Yoshikuni, S. Wakatsuki, E. Vohringer-Martinez and T. J. ErbFour amino acids define the CO2 binding pocket of enoyl-CoA carboxylases/reductasesProc Natl Acad Sci U S A1162813964-1396910.1073/pnas.1901471116
2017Stopka, Sylwia A. Agtuca, Beverly J. Koppenaal, David W. Paša-Tolić, Ljiljana Stacey, Gary Vertes, Akos Anderton, Christopher R.Laser-ablation electrospray ionization mass spectrometry with ion mobility separation reveals metabolites in the symbiotic interactions of soybean roots and rhizobiaThe Plant Journal912340-354
2018Stopka, Sylwia A. Khattar, Rikkita Agtuca, Beverly J. Anderton, Christopher R. Paša-Tolić, Ljiljana Stacey, Gary Vertes, AkosMetabolic Noise and Distinct Subpopulations Observed by Single Cell LAESI Mass Spectrometry of Plant Cells in situFrontiers in Plant Science9164610.3389/fpls.2018.01646
2019Stopka, Sylwia A. Samarah, Laith Z. Shaw, Jared B. Liyu, Andrey V. Veličković, Dušan Agtuca, Beverly J. Kukolj, Caroline Koppenaal, David W. Stacey, Gary Paša-Tolić, Ljiljana Anderton, Christopher R. Vertes, AkosAmbient Metabolic Profiling and Imaging of Biological Samples with Ultrahigh Molecular Resolution Using Laser Ablation Electrospray Ionization 21 Tesla FTICR Mass SpectrometryAnalytical Chemistry9185028-503510.1021/acs.analchem.8b05084
2021Strobbia, P., V. Cupil-Garcia, B. M. Crawford, A. M. Fales, T. J. Pfefer, Y. Liu, M. Maiwald, B. Sumpf and T. Vo-DinhAccurate in vivo tumor detection using plasmonic-enhanced shifted-excitation Raman difference spectroscopy (SERDS)Theranostics1194090-410210.7150/thno.53101
2018Strobbia, Pietro, Ren Odion and Tuan Vo-DinhSpectroscopic Chemical Sensing and Imaging: From Plants to Animals and HumansChemosensors6110.3390/chemosensors6010011
2020Strobbia, P., R. A. Odion, M. Maiwald, B. Sumpf and T. Vo-DinhDirect SERDS sensing of molecular biomarkers in plants under field conditionsAnal Bioanal Chem412143457-346610.1007/s00216-020-02544-5
2019Strobbia, P., Y. Ran, B. M. Crawford, V. Cupil-Garcia, R. Zentella, H. N. Wang, T. P. Sun and T. Vo-DinhInverse Molecular Sentinel-Integrated Fiberoptic Sensor for Direct and in Situ Detection of miRNA TargetsAnal Chem9196345-635210.1021/acs.analchem.9b01350
2019Strobbia, P., T. Sadler, R. A. Odion and T. Vo-DinhSERS in Plain Sight: A Polarization Modulation Method for Signal ExtractionAnal Chem9153319-332610.1021/acs.analchem.8b04360
2020Sun, W., A. Vila-Santa, N. Liu, T. Prozorov, D. Xie, N. T. Faria, F. C. Ferreira, N. P. Mira and Z. ShaoMetabolic engineering of an acid-tolerant yeast strain Pichia kudriavzevii for itaconic acid productionMetab Eng Commun10e0012410.1016/j.mec.2020.e00124
2020Tay, Jian Wei and Jeffrey C. CameronCyAN: A cyanobacterial imaging and data analysis platformbioRxiv10.1101/2020.07.28.225219
2017Tolar, B. B., J. Herrmann, J. R. Bargar, H. van den Bedem, S. Wakatsuki and C. A. FrancisIntegrated structural biology and molecular ecology of N-cycling enzymes from ammonia-oxidizing archaeaEnviron Microbiol Rep95484-49110.1111/1758-2229.12567
2018Tschauner, O., S. Huang, E. Greenberg, V. B. Prakapenka, C. Ma, G. R. Rossman, A. H. Shen, D. Zhang, M. Newville, A. Lanzirotti and K. TaitIce-VII inclusions in diamonds: Evidence for aqueous fluid in Earth’s deep mantleScience3596380113610.1126/science.aao3030
2018Velickovic, Dusan, Beverly J. Agtuca, Sylwia A. Stopka, Akos Vertes, David W. Koppenaal, Ljiljana Paga-Tolic, Gary Stacey and Christopher R. AndertonObserved metabolic asymmetry within soybean root nodules reflects unexpected complexity in rhizobacteria-legume metabolite exchangeISME Journal1292335-233810.1038/s41396-018-0188-8
2017Versaw, W. K. and L. R. GarciaIntracellular transport and compartmentation of phosphate in plantsCurr Opin Plant Biol3925-3010.1016/j.pbi.2017.04.015
2018Voon, C. P., X. Guan, Y. Sun, A. Sahu, M. N. Chan, P. Gardeström, S. Wagner, P. Fuchs, T. Nietzel, W. K. Versaw, M. Schwarzländer and B. L. LimATP compartmentation in plastids and cytosol of Arabidopsis thaliana revealed by fluorescent protein sensingProc Natl Acad Sci U S A11545E10778-e1078710.1073/pnas.1711497115
2021Walton, Courtney L., Vilmos Kertesz and John F. CahillDesign and Evaluation of a Tethered, Open Port Sampling Interface for Liquid Extraction-Mass Spectrometry Chemical AnalysisJournal of the American Society for Mass Spectrometry321198-20510.1021/jasms.0c00268
2021Wang, Chih-Feng, Mikhail Zamkov and Patrick Z. El-KhouryAmbient Tip-Enhanced Photoluminescence with 5 nm Spatial ResolutionThe Journal of Physical Chemistry C1252212251-1225510.1021/acs.jpcc.1c04012
2020Wang, C. F., Z. Cheng, B. T. O'Callahan, K. T. Crampton, M. R. Jones and P. Z. El-KhouryTip-Enhanced Multipolar Raman ScatteringJ Phys Chem Lett1172464-246910.1021/acs.jpclett.0c00559
2021Wang, C. F. and P. Z. El-KhouryImaging Plasmons with Sub-2 nm Spatial Resolution via Tip-Enhanced Four-Wave MixingJ Phys Chem Lett12143535-353910.1021/acs.jpclett.1c00763
2020Wang, C. F., B. T. O'Callahan, D. Kurouski, A. Krayev and P. Z. El-KhouryThe Prevalence of Anions at Plasmonic Nanojunctions: A Closer Look at p-NitrothiophenolJ Phys Chem Lett11103809-381410.1021/acs.jpclett.0c01006
2020Wang, C. F., B. T. O'Callahan, D. Kurouski, A. Krayev, Z. D. Schultz and P. Z. El-KhourySuppressing Molecular Charging, Nanochemistry, and Optical Rectification in the Tip-Enhanced Raman GeometryJ Phys Chem Lett11155890-589510.1021/acs.jpclett.0c01413
2020Wang, Dongping, Lisa A. Poyneer, Peter K. Weber, Diana C. Chen, Sonny Ly, Ted A. Laurence, Janghyuk Lee, S. Mark Ammons, Erin E. Nuccio and Jennifer Pett-RidgeAdaptive optics multiphoton microscope for imaging microbial processes in highly scattering soil and rootsConference Proceedings
2016Wang, H. N., B. M. Crawford, A. M. Fales, M. L. Bowie, V. L. Seewaldt and T. Vo-DinhMultiplexed Detection of MicroRNA Biomarkers Using SERS-Based Inverse Molecular Sentinel (iMS) NanoprobesJ Phys Chem C Nanomater Interfaces1203721047-2105010.1021/acs.jpcc.6b03299
2018Wang, P., Y. Mugume and D. C. BasshamNew advances in autophagy in plants: Regulation, selectivity and functionSemin Cell Dev Biol80113-12210.1016/j.semcdb.2017.07.018
2019Wang, S., J. V. Chacko, A. K. Sagar, K. W. Eliceiri and M. YuanNonparametric empirical Bayesian framework for fluorescence-lifetime imaging microscopyBiomed Opt Express10115497-551710.1364/BOE.10.005497
2018Wang, X., K. Dong, H. S. Choe, H. Liu, S. Lou, K. B. Tom, H. A. Bechtel, Z. You, J. Wu and J. YaoMultifunctional Microelectro-Opto-mechanical Platform Based on Phase-Transition MaterialsNano Lett1831637-164310.1021/acs.nanolett.7b04477
2019Wang, Xiaolei, Hannah Yi, Itay Gdor, Mark Hereld and Norbert F. SchererNanoscale Resolution 3D Snapshot Particle Tracking by Multifocal MicroscopyNano Letters19106781-678710.1021/acs.nanolett.9b01734
2018Wijesooriya, Chamari S., Julie A. Peterson, Pradeep Shrestha, Elizabeth J. Gehrmann, Arthur H. Winter and Emily A. SmithA Photoactivatable BODIPY Probe for Localization‐Based Super‐Resolution Cellular ImagingAngewandte Chemie1303912867-1287110.1002/ange.201805827
2018Wilton, Rosemarie, Angela J. Ahrendt, Shalaka Shinde, Deirdre J. Sholto-Douglas, Jessica L. Johnson, Melissa B. Brennan and Kenneth M. KemnerA New Suite of Plasmid Vectors for Fluorescence-Based Imaging of Root Colonizing PseudomonadsFrontiers in Plant Science8224210.3389/fpls.2017.02242
2018Xiang Huang, Alan Selewa, Xiaolei Wang, Matthew K. Daddysman, Itay Gdor, Rosemarie Wilton, Kenneth M. Kemner, Seunghwan Yoo, Aggelos K. Katsaggelos, Kuan He, Oliver Cossairt, Nicola J. Ferrier, Mark Hereld, Norbert F. Scherer3D Snapshot Microscopy of Extended Objects
2019Yang, H., H. Li and T. LiuPhotobleaching statistics in single-molecule on-/off-time distributionsJ Chem Phys1511717410110.1063/1.5126500
2020Yin, Shuhui, Ming Tien and Haw YangPrior-Apprised Unsupervised Learning of Subpixel Curvilinear Features in Low Signal/Noise ImagesBiophysical Journal118102458-2469
2018Yoo, S., P. Ruiz, X. Huang, K. He, N. J. Ferrier, M. Hereld, A. Selewa, M. Daddysman, N. Scherer, O. Cossairt and A. K. Katsaggelos3D Image Reconstruction from Multi-Focus Microscope: Axial Super-Resolution and Multiple-Frame ProcessingConference Proceedings
2017Yoon, C. H., H. DeMirci, R. G. Sierra, E. H. Dao, R. Ahmadi, F. Aksit, A. L. Aquila, A. Batyuk, H. Ciftci, S. Guillet, M. J. Hayes, B. Hayes, T. J. Lane, M. Liang, U. Lundstrom, J. E. Koglin, P. Mgbam, Y. Rao, T. Rendahl, E. Rodriguez, L. Zhang, S. Wakatsuki, S. Boutet, J. M. Holton and M. S. HunterSe-SAD serial femtosecond crystallography datasets from selenobiotinyl-streptavidinSci Data417005510.1038/sdata.2017.55
2019Zeng, Shuai, Zhen Lyu, Siva Ratna Kumari Narisetti, Dong Xu and Trupti JoshiKnowledge Base Commons (KBCommons) v1.1: a universal framework for multi-omics data integration and biological discoveriesBMC Genomics201194710.1186/s12864-019-6287-8
2019Zengler, Karsten, Kirsten Hofmockel, Nitin S. Baliga, Scott W. Behie, Hans C. Bernstein, James B. Brown, José R. Dinneny, Sheri A. Floge, Samuel P. Forry, Matthias Hess, Scott A. Jackson, Christer Jansson, Stephen R. Lindemann, Jennifer Pett-Ridge, Costas Maranas, Ophelia S. Venturelli, Matthew D. Wallenstein, Elizabeth A. Shank and Trent R. NorthenEcoFABs: advancing microbiome science through standardized fabricated ecosystemsNature Methods167567-57110.1038/s41592-019-0465-0
2017Zentella, R., N. Sui, B. Barnhill, W. P. Hsieh, J. Hu, J. Shabanowitz, M. Boyce, N. E. Olszewski, P. Zhou, D. F. Hunt and T. P. SunThe Arabidopsis O-fucosyltransferase SPINDLY activates nuclear growth repressor DELLANat Chem Biol135479-48510.1038/nchembio.2320
2017Zerbs, Sarah, Peter J. Korajczyk, Philippe H. Noirot and Frank R. CollartTransport capabilities of environmental Pseudomonads for sulfur compoundsProtein Science264784-79510.1002/pro.3124
2021Zhang, Jian, Wei Shen, Cynthia Collings, Kirk A. Vander Meulen, Brian G. Fox, Leida M. Vázquez Ramos, James A. Dumesic and Shi-You DingVisualizing plant cell wall changes proves the superiority of hydrochloric acid over sulfuric acid catalyzed γ-valerolactone pretreatmentChemical Engineering Journal41210.1016/j.cej.2021.128660