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2021Alves, E. E. N., D. R. Ortega Rodriguez, P. D. A. Rocha, L. Vergütz, L. Santini Junior, D. Hesterberg, L. C. R. Pessenda, M. Tomazello-Filho and L. M. D. Costa. Synchrotron-based X-ray microscopy for assessing elements distribution and speciation in mangrove tree-rings. Results in Chemistry 3.Stanford Synchrotron Radiation LightsourceAlves, E. E. N., D. R. Ortega Rodriguez, P. D. A. Rocha, L. Vergütz, L. Santini Junior, D. Hesterberg, L. C. R. Pessenda, M. Tomazello-Filho and L. M. D. CostaSynchrotron-based X-ray microscopy for assessing elements distribution and speciation in mangrove tree-ringsResults in Chemistry310.1016/j.rechem.2021.100121
2021Arutunian, S. G., A. V. Margaryan, G. S. Harutyunyan, E. G. Lazareva, M. Chung, D. Kwak and D. S. Gyulamiryan. Vibrating wire monitor: Versatile instrumentation for particle and photon beam measurements with wide dynamic range. Journal of Instrumentation 16(1).Advanced Photon SourceStructural Biology CenterX-ray Macromolecular CrystallographyArutunian, S. G., A. V. Margaryan, G. S. Harutyunyan, E. G. Lazareva, M. Chung, D. Kwak and D. S. GyulamiryanVibrating wire monitor: Versatile instrumentation for particle and photon beam measurements with wide dynamic rangeJournal of Instrumentation16(1), 10.1088/1748-0221/16/01/R01001
2021Ben-Sasson, A. J., J. L. Watson, W. Sheffler, M. C. Johnson, A. Bittleston, L. Somasundaram, J. Decarreau, F. Jiao, J. Chen, I. Mela, A. A. Drabek, S. M. Jarrett, S. C. Blacklow, C. F. Kaminski, G. L. Hura, J. J. De Yoreo, J. M. Kollman, H. Ruohola-Baker, E. Derivery and D. Baker. "Design of Biologically Active Binary Protein 2D Materials," Nature 589(7842), 468-473.ALSStructurally Integrated Biology for the Life Sciences Solution X-Ray Scattering (SAXS)Ben-Sasson, A. J., J. L. Watson, W. Sheffler, M. C. Johnson, A. Bittleston, L. Somasundaram, J. Decarreau, F. Jiao, J. Chen, I. Mela, A. A. Drabek, S. M. Jarrett, S. C. Blacklow, C. F. Kaminski, G. L. Hura, J. J. De Yoreo, J. M. Kollman, H. Ruohola-Baker, E. Derivery and D. BakerDesign of biologically active binary protein 2D materialsNature589(7842), 468-47310.1038/s41586-020-03120-8(related highlight)
2021Buscagan, T. M., K. A. Perez, A. O. Maggiolo, D. C. Rees and T. Spatzal. Structural Characterization of Two CO Molecules Bound to the Nitrogenase Active Site. Angewandte Chemie - International Edition 60(11), 5704-5707.Stanford Synchrotron Radiation LightsourceBuscagan, T. M., K. A. Perez, A. O. Maggiolo, D. C. Rees and T. SpatzalStructural Characterization of Two CO Molecules Bound to the Nitrogenase Active SiteAngewandte Chemie - International Edition60(11), 5704-570710.1002/anie.202015751
2021Byrne, N. J., A. C. Lee, J. Kostas, J. C. Reid, A. T. Partridge, S. S. So, J. E. Cowan, P. Abeywickrema, H. Huang, M. Zebisch, J. J. Barker, S. M. Soisson, A. Brooun and H. P. Su. Development of a robust crystallization platform for immune receptor TREM2 using a crystallization chaperone strategy. Protein Expression and Purification 179.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular CrystallographyByrne, N. J., A. C. Lee, J. Kostas, J. C. Reid, A. T. Partridge, S. S. So, J. E. Cowan, P. Abeywickrema, H. Huang, M. Zebisch, J. J. Barker, S. M. Soisson, A. Brooun and H. P. SuDevelopment of a robust crystallization platform for immune receptor TREM2 using a crystallization chaperone strategyProtein Expression and Purification17910.1016/j.pep.2020.105796
2021Chen, M. A. and B. D. Kocar. Development of a novel microfluidic device to study metal geochemistry in situ using X-ray fluorescence microprobe spectroscopy. Journal of Synchrotron Radiation 28, 461-471.National Synchrotron Light Source IIChen, M. A. and B. D. KocarDevelopment of a novel microfluidic device to study metal geochemistry in situ using X-ray fluorescence microprobe spectroscopyJournal of Synchrotron Radiation28, 461-47110.1107/S1600577520016239
2021Chen, P., Y. Li, Y. Nishiyama, S. V. Pingali, H. M. O'Neill, Q. Zhang and L. A. Berglund. Small Angle Neutron Scattering Shows Nanoscale PMMA Distribution in Transparent Wood Biocomposites. Nano Letters 21(7), 2883-2890.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Chen, P., Y. Li, Y. Nishiyama, S. V. Pingali, H. M. O'Neill, Q. Zhang and L. A. BerglundSmall Angle Neutron Scattering Shows Nanoscale PMMA Distribution in Transparent Wood BiocompositesNano Letters21(7), 2883-289010.1021/acs.nanolett.0c05038
2021Corless, E. I., S. M. S. Imran, M. B. Watkins, J. P. Bacik, J. R. Mattice, A. Patterson, K. Danyal, M. Soffe, R. Kitelinger, L. C. Seefeldt, S. Origanti, B. Bennett, B. Bothner, N. Ando and E. Antony. The flexible N-terminus of BchL autoinhibits activity through interaction with its [4Fe-4S] cluster and released upon ATP binding. Journal of Biological Chemistry 296.National Synchrotron Light Source IIStructural Biology CenterCorless, E. I., S. M. S. Imran, M. B. Watkins, J. P. Bacik, J. R. Mattice, A. Patterson, K. Danyal, M. Soffe, R. Kitelinger, L. C. Seefeldt, S. Origanti, B. Bennett, B. Bothner, N. Ando and E. AntonyThe flexible N-terminus of BchL autoinhibits activity through interaction with its [4Fe-4S] cluster and released upon ATP bindingJournal of Biological Chemistry29610.1074/jbc.RA120.016278
2021Dewey, C., J. R. Bargar and S. Fendorf. Porewater Lead Concentrations Limited by Particulate Organic Matter Coupled with Ephemeral Iron(III), and Sulfide Phases during Redox Cycles within Contaminated Floodplain Soils. Environmental Science & Technology 55(9), 5878-5886.Stanford Synchrotron Radiation LightsourceDewey, C., J. R. Bargar and S. FendorfPorewater Lead Concentrations Limited by Particulate Organic Matter Coupled with Ephemeral Iron(III), and Sulfide Phases during Redox Cycles within Contaminated Floodplain SoilsEnvironmental Science & Technology55(9), 5878-588610.1021/acs.est.0c08162
2021Drayman, N., DeMarco, J. K., Jones, K. A., Azizi, S.-A., Froggatt, H. M., Tan, K., Maltseva, N. I., Chen, S., Nicolaescu, V., Dvorkin, S., Furlong, K., Kathayat, R. S., Firpo, M. R., Mastrodomenico, V., Bruce, E. A., Schmidt, M. M., Jedrzejczak, Muñoz-Alía, Schuster, B., Nair, V., Han, K.-Y., O'Brien, A., Tomatsidou, A., Meyer, B., Vignuzzi, M., Missiakas, D.,   Botten, J. W., Brooke, C. B., Lee, H., Baker, S. C., Mounce, B. C., Heaton, N. S., Severson, W. E., Palmer, K. E., Dickinson, B. C., Joachimiak, A., Randall, G., Tay, Savaş. "Masitinib is a Broad Coronavirus 3CL Inhibitor that Blocks Replication of SARS-CoV-2," Science 373, 931–6. DOI:10.1126/science.abg5827.APSStructural Biology Center X-ray Macromolecular Crystallography (MX)10.1126/science.abg5827(related highlight) (feature story)
2021do Nascimento, C. W. A., D. Hesterberg and R. Tappero. Imaging Zn and Ni distributions in leaves of different ages of the hyperaccumulator Noccaea caerulescens by synchrotron-based X-ray fluorescence. Journal of Hazardous Materials 408.National Synchrotron Light Source IIdo Nascimento, C. W. A., D. Hesterberg and R. TapperoImaging Zn and Ni distributions in leaves of different ages of the hyperaccumulator Noccaea caerulescens by synchrotron-based X-ray fluorescenceJournal of Hazardous Materials40810.1016/j.jhazmat.2020.124813
2021Fernández-Lucas, Jesús, et al. "Biochemical and structural studies of two tetrameric nucleoside 2′-deoxyribosyltransferases from psychrophilic and mesophilic bacteria: Insights into cold-adaptation," Int. J. Biol.Macromol. 192, 138-150 (2021).APSStructural Biology Center X-ray Macromolecular Crystallography (MX)10.1016/j.ijbiomac.2021.09.164
2021Gao, A., N. Vasilyev, A. Kaushik, W. Duan and A. Serganov. Principles of RNA and nucleotide discrimination by the RNA processing enzyme RppH. Nucleic Acids Research 48(7), 3776-3788.National Synchrotron Light Source IICenter for BioMolecular StructureX-ray Macromolecular Crystallography (MX)Gao, A., N. Vasilyev, A. Kaushik, W. Duan and A. SerganovPrinciples of RNA and nucleotide discrimination by the RNA processing enzyme RppHNucleic Acids Research48(7), 3776-378810.1093/NAR/GKAA024
2021Gonzalez, A., T. Mannen, T. Çağatay, A. Fujiwara, H. Matsumura, A. B. Niesman, C. A. Brautigam, Y. M. Chook and T. Yoshizawa. Mechanism of karyopherin-β2 binding and nuclear import of ALS variants FUS(P525L), and FUS(R495X). Scientific Reports 11(1).Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Gonzalez, A., T. Mannen, T. Çağatay, A. Fujiwara, H. Matsumura, A. B. Niesman, C. A. Brautigam, Y. M. Chook and T. YoshizawaMechanism of karyopherin-β2 binding and nuclear import of ALS variants FUS(P525L), and FUS(R495X), Scientific Reports11(1), 10.1038/s41598-021-83196-y
2021Guo, R., J. Sumner and S. Qian. Structure of Diisobutylene Maleic Acid Copolymer (DIBMA), and Its Lipid Particle as a "stealth" Membrane-Mimetic for Membrane Protein Research. ACS Applied Bio Materials 4(6), 4760–4768.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Guo, R., J. Sumner and S. QianStructure of Diisobutylene Maleic Acid Copolymer (DIBMA), and Its Lipid Particle as a "stealth" Membrane-Mimetic for Membrane Protein ResearchACS Applied Bio Materials4, 6, 4760–476810.1021/acsabm.0c01626
2021Guthmiller, Jenna J., et al. "SARS-CoV-2 Infection Severity Is Linked to Superior Humoral Immunity against the Spike," mBio 12 (1), e02940 (2021).APSStructural Biology Center X-ray Macromolecular Crystallography (MX)10.1128/mBio.02940-20
2021Hayes, D. G., D. B. Anunciado, R. Ye, R. N. D. Williams, H. M. O'Neill, S. V. Pingali and V. S. Urban. Incorporation of Membrane Proteins Into Bicontinuous Microemulsions Through Winsor-III System-Based Extraction. Journal of Surfactants and Detergents 24: 649-660.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologyX-ray Macromolecular Crystallography (MX)Hayes, D. G., D. B. Anunciado, R. Ye, R. N. D. Williams, H. M. O'Neill, S. V. Pingali and V. S. UrbanIncorporation of Membrane Proteins Into Bicontinuous Microemulsions Through Winsor-III System-Based ExtractionJournal of Surfactants and Detergents24: 649-66010.1002/jsde.12500
2021Hodge, Curtis D., et al. "Rigid monoclonal antibodies improve detection of SARS-CoV-2 nucleocapsid protein," MABS-Austin 13 (1), 1905978 (2021). DOI:APSStructural Biology Center X-ray Macromolecular Crystallography (MX)10.1080/19420862.2021.1905978
2021Hsia, Y., R. Mout, W. Sheffler, N. I. Edman, I. Vulovic, Y. J. Park, R. L. Redler, M. J. Bick, A. K. Bera, A. Courbet, A. Kang, T. J. Brunette, U. Nattermann, E. Tsai, A. Saleem, C. M. Chow, D. Ekiert, G. Bhabha, D. Veesler and D. Baker. Design of multi-scale protein complexes by hierarchical building block fusion. Nature Communications 12(1).Advanced Light SourceStructurally Integrated Biology for the Life SciencesHsia, Y., R. Mout, W. Sheffler, N. I. Edman, I. Vulovic, Y. J. Park, R. L. Redler, M. J. Bick, A. K. Bera, A. Courbet, A. Kang, T. J. Brunette, U. Nattermann, E. Tsai, A. Saleem, C. M. Chow, D. Ekiert, G. Bhabha, D. Veesler and D. BakerDesign of multi-scale protein complexes by hierarchical building block fusionNature Communications12(1), 10.1038/s41467-021-22276-z
2021Jung, H. and S. Lee. Insights into the mismatch discrimination mechanism of Y-family DNA polymerase Dpo4. Biochemical Journal 478(9), 1769-1781.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Jung, H. and S. LeeInsights into the mismatch discrimination mechanism of Y-family DNA polymerase Dpo4Biochemical Journal478(9), 1769-178110.1042/BCJ20210162
2021Klein, T. A., D. W. Grebenc, S. Y. Gandhi, V. S. Shah, Y. Kim and J. C. Whitney. Structure of the extracellular region of the bacterial type VIIb secretion system subunit EsaA. Structure 29(2), 177-185.e6.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Klein, T. A., D. W. Grebenc, S. Y. Gandhi, V. S. Shah, Y. Kim and J. C. WhitneyStructure of the extracellular region of the bacterial type VIIb secretion system subunit EsaAStructure29(2), 177-185.e610.1016/j.str.2020.11.002
2021Kroll, T., M. L. Baker, S. A. Wilson, M. Lundberg, A. Juhin, M. A. Arrio, J. J. Yan, L. B. Gee, A. Braun, T. C. Weng, D. Sokaras, B. Hedman, K. O. Hodgson and E. I. Solomon. Effect of 3d/4p Mixing on 1s2p Resonant Inelastic X-ray Scattering: Electronic Structure of Oxo-Bridged Iron Dimers. Journal of the American Chemical Society 143(12), 4569-4584.Stanford Synchrotron Radiation LightsourceKroll, T., M. L. Baker, S. A. Wilson, M. Lundberg, A. Juhin, M. A. Arrio, J. J. Yan, L. B. Gee, A. Braun, T. C. Weng, D. Sokaras, B. Hedman, K. O. Hodgson and E. I. SolomonEffect of 3d/4p Mixing on 1s2p Resonant Inelastic X-ray Scattering: Electronic Structure of Oxo-Bridged Iron DimersJournal of the American Chemical Society143(12), 4569-458410.1021/jacs.0c11193
2021Lakhanpal, S., J. S. Fan, S. Luan and K. Swaminathan. Structural and functional analyses of the PPIase domain of Arabidopsis thaliana CYP71 reveal its catalytic activity toward histone H3. FEBS Letters 595(1), 145-154.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Lakhanpal, S., J. S. Fan, S. Luan and K. SwaminathanStructural and functional analyses of the PPIase domain of Arabidopsis thaliana CYP71 reveal its catalytic activity toward histone H3FEBS Letters595(1), 145-15410.1002/1873-3468.13965
2021Li, B., X. Deng, S. H. Kim, L. Buhrow, D. R. Tomchick, M. A. Phillips and A. J. Michael. Alternative pathways utilize or circumvent putrescine for biosynthesis of putrescine-containing rhizoferrin. Journal of Biological Chemistry 296.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular CrystallographyLi, B., X. Deng, S. H. Kim, L. Buhrow, D. R. Tomchick, M. A. Phillips and A. J. MichaelAlternative pathways utilize or circumvent putrescine for biosynthesis of putrescine-containing rhizoferrinJournal of Biological Chemistry29610.1074/jbc.RA120.016738
2021Limmer, M. A., A. E. Evans and A. L. Seyfferth. A New Method to Capture the Spatial and Temporal Heterogeneity of A quatic Plant Iron Root Plaque in Situ. Environmental Science & Technology 55(2), 912-918.National Synchrotron Light Source II, Stanford Synchrotron Radiation LightsourceLimmer, M. A., A. E. Evans and A. L. SeyfferthA New Method to Capture the Spatial and Temporal Heterogeneity of A quatic Plant Iron Root Plaque in SituEnvironmental Science & Technology55(2), 912-91810.1021/acs.est.0c02949
2021Luo, S., B. G. Coutinho, P. Dadhwal, Y. Oda, J. Ren, A. L. Schaefer, E. Peter Greenberg, C. S. Harwood and L. Tong. Structural basis for a bacterial Pip system plant effector recognition protein. Proceedings of the National Academy of Sciences of the United States of America 118(10).National Synchrotron Light Source IICenter for BioMolecular StructureX-ray Macromolecular Crystallography (MX)Luo, S., B. G. Coutinho, P. Dadhwal, Y. Oda, J. Ren, A. L. Schaefer, E. Peter Greenberg, C. S. Harwood and L. TongStructural basis for a bacterial Pip system plant effector recognition proteinProceedings of the National Academy of Sciences of the United States of America118(10), 10.1073/pnas.2019462118
2021Wilamowski, Mateusz, et al. "2′-O methylation of RNA cap in SARS-CoV-2 captured by serial crystallography," Proc. Natl. Acad. Sci. USA 118 (21), e2100170118 (2021).APSStructural Biology Center X-ray Macromolecular Crystallography (MX)2′-O methylation of RNA cap in SARS-CoV-2 captured by serial crystallography10.1073/pnas.2100170118
2021Michalska, Karolina, et al. "Catalytically impaired TrpA subunit of tryptophan synthase from Chlamydia trachomatis is an allosteric regulator of TrpB," Protein Sci. 30 (9), 1904-1918 (2021).APSStructural Biology Center X-ray Macromolecular Crystallography (MX)Catalytically impaired TrpA subunit of tryptophan synthase from Chlamydia trachomatis is an allosteric regulator of TrpB10.1002/pro.4143
2021Michalska, K., Jedrzejczak, R., Wower, J., Chang, C., Bargaña, B., Glbert, I. H., Forte, B., Joachimiak, A. 2021."Mycobacterium tuberculosis Phe-tRNA synthetase: Structural Insights into tRNA Recognition and Aminoacylation," Nucleic Acids Research 49 (9), 5351–68. DOI:10.1093/nar/gkab272.APSStructural Biology Center X-ray Macromolecular Crystallography (MX)Mycobacterium tuberculosis Phe-tRNA synthetase: structural insights into tRNA recognition and aminoacylation10.1093/nar/gkab272(related highlight) (feature story)
2021Michalska, Karolina and Joachimiak, Andrzej. "Structural genomics and the Protein Data Bank," J. Biol. Chem. 296, 100747 (2021).APSStructural Biology Center X-ray Macromolecular Crystallography (MX)Structural genomics and the Protein Data Bank10.1016/j.jbc.2021.100747
2021Miller, K. R., S. Biswas, A. Jasniewski, A. H. Follmer, A. Biswas, T. Albert, S. Sabuncu, E. L. Bominaar, M. P. Hendrich, P. Moënne-Loccoz and A. S. Borovik. Artificial Metalloproteins with Dinuclear Iron-Hydroxido Centers. Journal of the American Chemical Society 143(5), 2384-2393.Stanford Synchrotron Radiation LightsourceMiller, K. R., S. Biswas, A. Jasniewski, A. H. Follmer, A. Biswas, T. Albert, S. Sabuncu, E. L. Bominaar, M. P. Hendrich, P. Moënne-Loccoz and A. S. BorovikArtificial Metalloproteins with Dinuclear Iron-Hydroxido CentersJournal of the American Chemical Society143(5), 2384-239310.1021/jacs.0c12564
2021Modi, Gyan, et al. "The Enzymatic Activity of Inosine 5′-Monophosphate Dehydrogenase May Not Be a Vulnerable Target for Staphylococcus aureus Infections," ACS Infect. Dis. 7 (11), 3062-3076 (2021).APSStructural Biology Center X-ray Macromolecular Crystallography (MX)10.1021/acsinfecdis.1c00342
2021Mrugała, B., A. Miłaczewska, P. J. Porebski, E. Niedzialkowska, M. Guzik, W. Minor and T. Borowski. A study on the structure, mechanism, and biochemistry of kanamycin B dioxygenase (KanJ), —an enzyme with a broad range of substrates. FEBS Journal 288(4), 1366-1386.DOI: 10.1111/febs.15462Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Mrugała, B., A. Miłaczewska, P. J. Porebski, E. Niedzialkowska, M. Guzik, W. Minor and T. BorowskiA study on the structure, mechanism, and biochemistry of kanamycin B dioxygenase (KanJ), —an enzyme with a broad range of substratesFEBS Journal288(4), 1366-138610.1111/febs.15462
2021Olmeda, I., P. Casino, R. E. Collins, R. Sendra, S. Callejón, J. Huesa, A. S. Soares, S. Ferrer and I. Pardo. Structural analysis and biochemical properties of laccase enzymes from two Pediococcus species. Microbial Biotechnology 14(3), 1026-1043.National Synchrotron Light Source IICenter for BioMolecular StructureX-ray Macromolecular Crystallography (MX)Olmeda, I., P. Casino, R. E. Collins, R. Sendra, S. Callejón, J. Huesa, A. S. Soares, S. Ferrer and I. PardoStructural analysis and biochemical properties of laccase enzymes from two Pediococcus speciesMicrobial Biotechnology14(3), 1026-104310.1111/1751-7915.13751
2021Osipiuk, J., S.-A. Azizi, S. Dvorkin, M. Endres, R. Jedrzejczak, K. A. Jones, S. Kang, R. S. Kathayat, Y. Kin, V. G. Lisnyak, S. L. Maki, V. Nicolaescu, C. A. Taylor, C. Tesar, Y.-A. Zhang, Z. Zhou, G, Randall, K. Michalska, S. A. Snyder, B. C. Dickinson, and A. Joachimiak. 2021. "Structure of Papain-like Protease from SARS-CoV-2 and its Complexes with Non-Covalent Inhibitors," Nature Communications 12, 743.APSStructural Biology Center X-ray Macromolecular Crystallography (MX)10.1038/s41467-021-21060-3(related highlight) (feature story)
2021Rasbury, E. Troy, Theodore M. Present, Paul Northrup, Ryan V. Tappero, Antonio Lanzirotti, Jennifer M. Cole, Kathleen M. Wooton and Kevin Hatton. Tools for uranium characterization in carbonate samples: case studies of natural U–Pb geochronology reference materials. Geochronology 3(1), 103-122.National Synchrotron Light Source IIRasbury, E. Troy, Theodore M. Present, Paul Northrup, Ryan V. Tappero, Antonio Lanzirotti, Jennifer M. Cole, Kathleen M. Wooton and Kevin HattonTools for uranium characterization in carbonate samples: case studies of natural U–Pb geochronology reference materialsGeochronology3(1), 103-12210.5194/gchron-3-103-2021
2021Raven, M. R., R. G. Keil and S. M. Webb. Microbial sulfate reduction and organic sulfur formation in sinking marine particles. Science 371(6525), 178-181.Stanford Synchrotron Radiation LightsourceRaven, M. R., R. G. Keil and S. M. WebbMicrobial sulfate reduction and organic sulfur formation in sinking marine particlesScience371(6525), 178-18110.1126/science.abc6035
2021Reinhard, M. E., M. W. Mara, T. Kroll, H. Lim, R. G. Hadt, R. Alonso-Mori, M. Chollet, J. M. Glownia, S. Nelson, D. Sokaras, K. Kunnus, T. B. Driel, R. W. Hartsock, K. S. Kjaer, C. Weninger, E. Biasin, L. B. Gee, K. O. Hodgson, B. Hedman, U. Bergmann, E. I. Solomon and K. J. Gaffney. Short-lived metal-centered excited state initiates iron-methionine photodissociation in ferrous cytochrome c. Nature Communications 12(1).Stanford Synchrotron Radiation LightsourceReinhard, M. E., M. W. Mara, T. Kroll, H. Lim, R. G. Hadt, R. Alonso-Mori, M. Chollet, J. M. Glownia, S. Nelson, D. Sokaras, K. Kunnus, T. B. Driel, R. W. Hartsock, K. S. Kjaer, C. Weninger, E. Biasin, L. B. Gee, K. O. Hodgson, B. Hedman, U. Bergmann, E. I. Solomon and K. J. GaffneyShort-lived metal-centered excited state initiates iron-methionine photodissociation in ferrous cytochrome cNature Communications12(1), 10.1038/s41467-021-21423-w
2021Roy, R. N., K. Hendriks, W. Kopec, S. Abdolvand, K. L. Weiss, B. L. De Groot, A. Lange, H. Sun and L. Coates. Structural plasticity of the selectivity filter in a nonselective ion channel. IUCrJ 8, 421-430.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Roy, R. N., K. Hendriks, W. Kopec, S. Abdolvand, K. L. Weiss, B. L. De Groot, A. Lange, H. Sun and L. CoatesStructural plasticity of the selectivity filter in a nonselective ion channelIUCrJ8(), 421-43010.1107/S205225252100213X
2021Schuller, M., G. J. Correy, S. Gahbauer, D. Fearon, T. Wu, and R. E. Díaz. 2021. "Fragment Binding to the Nsp3 Macrodomain of SARS-CoV-2 Identified through Crystallographic Screening and Computational Docking,"" Science Advances 7(16), eabf8711.ALS, NSLSII, SSRLCenter for BioMolecular Structure, Structurally Integrated Biology for the Life Sciences, Structural Molecular Biology ResourceX-ray Macromolecular Crystallography (MX)10.1126/sciadv.abf8711(related highlight) (feature story)
2021Seyfferth, A. L., M. A. Limmer and R. Tappero. A method to preserve wetland roots and rhizospheres for elemental imaging. Journal of Visualized Experiments 2021(168), 44209.National Synchrotron Light Source IISeyfferth, A. L., M. A. Limmer and R. TapperoA method to preserve wetland roots and rhizospheres for elemental imagingJournal of Visualized Experiments2021(168), 4420910.3791/62227
2021Shah, F., M. Gressler, S. Nehzati, M. O. De Beeck, L. Gentile, D. Hoffmeister, P. Persson and A. Tunlid. Secretion of iron(III), -reducing metabolites during protein acquisition by the ectomycorrhizal fungus Paxillus involutus. Microorganisms 9(1), 44212.Stanford Synchrotron Radiation LightsourceShah, F., M. Gressler, S. Nehzati, M. O. De Beeck, L. Gentile, D. Hoffmeister, P. Persson and A. TunlidSecretion of iron(III), -reducing metabolites during protein acquisition by the ectomycorrhizal fungus Paxillus involutusMicroorganisms9(1), 4421210.3390/microorganisms9010035
2021Shin, I., I. Davis, K. Nieves-Merced, Y. Wang, S. McHardy and A. Liu. A novel catalytic heme cofactor in SfmD with a single thioether bond and abis-His ligand set revealed by ade novocrystal structural and spectroscopic study. Chemical Science 12(11), 3984-3998.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Shin, I., I. Davis, K. Nieves-Merced, Y. Wang, S. McHardy and A. LiuA novel catalytic heme cofactor in SfmD with a single thioether bond and abis-His ligand set revealed by ade novocrystal structural and spectroscopic studyChemical Science12(11), 3984-399810.1039/d0sc06369j
2021Taher, N. M., K. L. Hvorecny, C. M. Burke, M. S. A. Gilman, G. E. Heussler, J. Adolf-Bryfogle, C. D. Bahl, G. A. O'Toole and D. R. Madden. Biochemical and structural characterization of two cif-like epoxide hydrolases from Burkholderia cenocepacia. Current Research in Structural Biology 3, 72-84.National Synchrotron Light Source IICenter for BioMolecular StructureX-ray Macromolecular Crystallography (MX)Taher, N. M., K. L. Hvorecny, C. M. Burke, M. S. A. Gilman, G. E. Heussler, J. Adolf-Bryfogle, C. D. Bahl, G. A. O'Toole and D. R. MaddenBiochemical and structural characterization of two cif-like epoxide hydrolases from Burkholderia cenocepaciaCurrent Research in Structural Biology3, 72-8410.1016/j.crstbi.2021.02.002
2021Valdespino-Castillo, P. M., A. Bautista-García, F. Favoretto, M. Merino-Ibarra, R. J. Alcántara-Hernández, T. Pi-Puig, F. S. Castillo, S. Espinosa-Matías, H. Y. Holman and A. Blanco-Jarvio. Interplay of microbial communities with mineral environments in coralline algae. Science of the Total Environment 757.Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramValdespino-Castillo, P. M., A. Bautista-García, F. Favoretto, M. Merino-Ibarra, R. J. Alcántara-Hernández, T. Pi-Puig, F. S. Castillo, S. Espinosa-Matías, H. Y. Holman and A. Blanco-JarvioInterplay of microbial communities with mineral environments in coralline algaeScience of the Total Environment75710.1016/j.scitotenv.2020.143877
2021Van Stappen, C., L. Decamps and S. DeBeer. Preparation and spectroscopic characterization of lyophilized Mo nitrogenase. Journal of Biological Inorganic Chemistry 26(1), 81-91.Stanford Synchrotron Radiation LightsourceVan Stappen, C., L. Decamps and S. DeBeerPreparation and spectroscopic characterization of lyophilized Mo nitrogenaseJournal of Biological Inorganic Chemistry26(1), 81-9110.1007/s00775-020-01838-4
2021Wang, J., K. Rajan, A. Annamraju, S. C. Chmely, S. V. Pingali, D. J. Carrier and N. Labbé. A Sequential Autohydrolysis-Ionic Liquid Fractionation Process for High Quality Lignin Production. Energy and Fuels 35(3), 2293-2302.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Wang, J., K. Rajan, A. Annamraju, S. C. Chmely, S. V. Pingali, D. J. Carrier and N. LabbéA Sequential Autohydrolysis-Ionic Liquid Fractionation Process for High Quality Lignin ProductionEnergy and Fuels35(3), 2293-230210.1021/acs.energyfuels.0c03849
2021Wang, X., J. H. Pereira, S. Tsutakawa, X. Fang, P. D. Adams, A. Mukhopadhyay and T. S. Lee. "Efficient Production of Oxidized Terpenoids via Engineering Fusion Proteins of Terpene Synthase and cCtochrome P450," Metabolic Engineering 64, 41–51.ALSStructurally Integrated Biology for the Life Sciences Solution X-Ray Scattering (SAXS)Wang, Xi, Jose Henrique Pereira, Susan Tsutakawa, Xinyue Fang, Paul D. Adams, Aindrila Mukhopadhyay and Taek Soon LeeEfficient production of oxidized terpenoids via engineering fusion proteins of terpene synthase and cytochrome P450Metabolic Engineering64, 41-5110.1016/j.ymben.2021.01.004(related highlight)
2021Wang, Y., I. Davis, I. Shin, H. Xu and A. Liu. Molecular Rationale for Partitioning between C-H and C-F Bond Activation in Heme-Dependent Tyrosine Hydroxylase. Journal of the American Chemical Society 143(12), 4680-4693.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Wang, Y., I. Davis, I. Shin, H. Xu and A. LiuMolecular Rationale for Partitioning between C-H and C-F Bond Activation in Heme-Dependent Tyrosine HydroxylaseJournal of the American Chemical Society143(12), 4680-469310.1021/jacs.1c00175
2021Wilt, H. M., P. Yu, K. Tan, Y. X. Wang and J. R. Stagno. Tying the knot in the tetrahydrofolate (THF), riboswitch: A molecular basis for gene regulation. Journal of Structural Biology 213(1).Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Wilt, H. M., P. Yu, K. Tan, Y. X. Wang and J. R. StagnoTying the knot in the tetrahydrofolate (THF), riboswitch: A molecular basis for gene regulationJournal of Structural Biology213(1), 10.1016/j.jsb.2021.107703
2021Witek, W., J. Sliwiak and M. Ruszkowski. Structural and mechanistic insights into the bifunctional HISN2 enzyme catalyzing the second and third steps of histidine biosynthesis in plants. Scientific Reports 11(1).Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Witek, W., J. Sliwiak and M. RuszkowskiStructural and mechanistic insights into the bifunctional HISN2 enzyme catalyzing the second and third steps of histidine biosynthesis in plantsScientific Reports11(1), 10.1038/s41598-021-88920-2
2021Yabukarski, F., J. T. Biel, M. M. Pinney, T. Doukov, A. S. Powers, J. S. Fraser and D. Herschlag. Assessment of enzyme active site positioning and tests of catalytic mechanisms through X-ray–derived conformational ensembles. Proceedings of the National Academy of Sciences of the United States of America 117(52), 33204-33215.Stanford Synchrotron Radiation LightsourceYabukarski, F., J. T. Biel, M. M. Pinney, T. Doukov, A. S. Powers, J. S. Fraser and D. HerschlagAssessment of enzyme active site positioning and tests of catalytic mechanisms through X-ray–derived conformational ensemblesProceedings of the National Academy of Sciences of the United States of America117(52), 33204-3321510.1073/PNAS.2011350117
2021Yamaguchi, N., T. Ohkura, A. Hikono, Y. Hashimoto, A. Suda, T. Yamamoto, K. Ando, M. Kasuya, P. Northrup, S. L. Wang and D. Hesterberg. Microscale heterogeneous distribution and speciation of phosphorus in soils amended with mineral fertilizer and cattle manure compost. Minerals 11(2), 44214.National Synchrotron Light Source IIYamaguchi, N., T. Ohkura, A. Hikono, Y. Hashimoto, A. Suda, T. Yamamoto, K. Ando, M. Kasuya, P. Northrup, S. L. Wang and D. HesterbergMicroscale heterogeneous distribution and speciation of phosphorus in soils amended with mineral fertilizer and cattle manure compostMinerals11(2), 4421410.3390/min11020121
2021Yan, J., M. Fischel, H. Chen, M. G. Siebecker, P. Wang, F. J. Zhao and D. L. Sparks. "Cadmium Speciation and Release Kinetics in a Paddy Soil as Affected by Soil Amendments and Flooding-Draining Cycle." Environmental Pollution 268.Advanced Photon Source, Stanford Synchrotron Radiation LightsourceStructural Biology Center, Structural Molecular BiologyX-ray Absorption Spectroscopy (XAS)Yan, J., M. Fischel, H. Chen, M. G. Siebecker, P. Wang, F. J. Zhao and D. L. SparksCadmium speciation and release kinetics in a paddy soil as affected by soil amendments and flooding-draining cycleEnvironmental Pollution26810.1016/j.envpol.2020.115944(related highlight)
2021Yang, Y., T. Borel, F. De Azambuja, D. Johnson, J. P. Sorrentino, C. Udokwu, I. Davis, A. Liu and R. A. Altman. Diflunisal Derivatives as Modulators of ACMS Decarboxylase Targeting the Tryptophan-Kynurenine Pathway. Journal of Medicinal Chemistry 64(1), 797-811.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Yang, Y., T. Borel, F. De Azambuja, D. Johnson, J. P. Sorrentino, C. Udokwu, I. Davis, A. Liu and R. A. AltmanDiflunisal Derivatives as Modulators of ACMS Decarboxylase Targeting the Tryptophan-Kynurenine PathwayJournal of Medicinal Chemistry64(1), 797-81110.1021/acs.jmedchem.0c01762
2021Yang, Yiming, Veronika Kozlovskaya, Maksim Dolmat, Yin Song, Shuo Qian, Volker S. Urban, Donald Cropek and Eugenia Kharlampieva. Temperature controlled transformations of giant unilamellar vesicles of amphiphilic triblock copolymers synthesized via microfluidic mixing. Applied Surface Science Advances 5.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Yang, Yiming, Veronika Kozlovskaya, Maksim Dolmat, Yin Song, Shuo Qian, Volker S. Urban, Donald Cropek and Eugenia KharlampievaTemperature controlled transformations of giant unilamellar vesicles of amphiphilic triblock copolymers synthesized via microfluidic mixingApplied Surface Science Advances510.1016/j.apsadv.2021.100101
2021Yao, H. and B. D. Olsen. SANS quantification of bound water in water-soluble polymers across multiple concentration regimes. Soft Matter 17(21), 5303-5318.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Yao, H. and B. D. OlsenSANS quantification of bound water in water-soluble polymers across multiple concentration regimesSoft Matter17(21), 5303-531810.1039/d0sm01962c
2021Yao, X., B. Avery, M. Bobrek, L. Debeer‐schmitt, X. Geng, R. Gregory, G. Guyotte, M. Harrington, S. Hartman, L. He, L. Heroux, K. Kasemir, R. Knudson, J. Kohl, C. Lionberger, K. Littrell, M. Pearson, S. V. Pingali, C. Pratt, S. Qian, M. Ruiz‐rodriguez, V. Sedov, G. Taufer, V. Urban and K. Vodopivec. A unified user‐friendly instrument control and data acquisition system for the ornl sans instrument suite. Applied Sciences (Switzerland), 11(3), 44211.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Yao, X., B. Avery, M. Bobrek, L. Debeer‐schmitt, X. Geng, R. Gregory, G. Guyotte, M. Harrington, S. Hartman, L. He, L. Heroux, K. Kasemir, R. Knudson, J. Kohl, C. Lionberger, K. Littrell, M. Pearson, S. V. Pingali, C. Pratt, S. Qian, M. Ruiz‐rodriguez, V. Sedov, G. Taufer, V. Urban and K. VodopivecA unified user‐friendly instrument control and data acquisition system for the ornl sans instrument suiteApplied Sciences (Switzerland), 11(3), 4421110.3390/app11031216
2021York, N. J., M. M. Lockart, S. Sardar, N. Khadka, W. Shi, R. E. Stenkamp, J. Zhang, P. D. Kiser and B. S. Pierce. Structure of 3-mercaptopropionic acid dioxygenase with a substrate analog reveals bidentate substrate binding at the iron center. Journal of Biological Chemistry 296.National Synchrotron Light Source IICenter for BioMolecular StructureX-ray Macromolecular Crystallography (MX)York, N. J., M. M. Lockart, S. Sardar, N. Khadka, W. Shi, R. E. Stenkamp, J. Zhang, P. D. Kiser and B. S. PierceStructure of 3-mercaptopropionic acid dioxygenase with a substrate analog reveals bidentate substrate binding at the iron centerJournal of Biological Chemistry29610.1016/j.jbc.2021.100492
2021Yuan, Y., H. Li, W. Leite, Q. Zhang, P. V. Bonnesen, J. L. Labbé, K. L. Weiss, S. V. Pingali, K. Hong, V. S. Urban, S. Salmon and H. O'Neill. Biosynthesis and characterization of deuterated chitosan in filamentous fungus and yeast. Carbohydrate Polymers 257.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Yuan, Y., H. Li, W. Leite, Q. Zhang, P. V. Bonnesen, J. L. Labbé, K. L. Weiss, S. V. Pingali, K. Hong, V. S. Urban, S. Salmon and H. O'NeillBiosynthesis and characterization of deuterated chitosan in filamentous fungus and yeastCarbohydrate Polymers25710.1016/j.carbpol.2021.117637
2021Zhang, M., M. Lei, S. Qin, A. Dong, A. Yang, Y. Li, P. Loppnau, T. R. Hughes, J. Min and Y. Liu. Crystal structure of the BRPF2 PWWP domain in complex with DNA reveals a different binding mode than the HDGF family of PWWP domains. Biochimica et Biophysica Acta - Gene Regulatory Mechanisms 1864(3).Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Zhang, M., M. Lei, S. Qin, A. Dong, A. Yang, Y. Li, P. Loppnau, T. R. Hughes, J. Min and Y. LiuCrystal structure of the BRPF2 PWWP domain in complex with DNA reveals a different binding mode than the HDGF family of PWWP domainsBiochimica et Biophysica Acta - Gene Regulatory Mechanisms1864(3), 10.1016/j.bbagrm.2021.194688
2020Ade-Browne, C., M. Mirzamani, A. Dawn, S. Qian, R. G. Thompson, R. W. Glenn and H. Kumari. Effect of ethoxylation and lauryl alcohol on the self-assembly of sodium laurylsulfate: Significant structural and rheological transformation. Colloids and Surfaces A: Physicochemical and Engineering Aspects 595.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Ade-Browne, C., M. Mirzamani, A. Dawn, S. Qian, R. G. Thompson, R. W. Glenn and H. KumariEffect of ethoxylation and lauryl alcohol on the self-assembly of sodium laurylsulfate: Significant structural and rheological transformationColloids and Surfaces A: Physicochemical and Engineering Aspects59510.1016/j.colsurfa.2020.124704
2020Akella, R., M. A. Drozdz, J. M. Humphreys, J. Jiou, M. Z. Durbacz, Z. J. Mohammed, H. He, J. Liwocha, K. Sekulski and E. J. Goldsmith. A phosphorylated intermediate in the activation of WNK kinases. Biochemistry 59(18), 1747-1755.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Akella, R., M. A. Drozdz, J. M. Humphreys, J. Jiou, M. Z. Durbacz, Z. J. Mohammed, H. He, J. Liwocha, K. Sekulski and E. J. GoldsmithA phosphorylated intermediate in the activation of WNK kinasesBiochemistry59(18), 1747-175510.1021/acs.biochem.0c00146
2020Amaya, J. A., D. Batabyal and T. L. Poulos. Proton relay network in the bacterial P450s: CYP101A1 and CYP101D1. Biochemistry 59(31), 2896-2902.Stanford Synchrotron Radiation LightsourceAmaya, J. A., D. Batabyal and T. L. PoulosProton relay network in the bacterial P450s: CYP101A1 and CYP101D1Biochemistry59(31), 2896-290210.1021/acs.biochem.0c00329
2020Artz, J. H., O. A. Zadvornyy, D. W. Mulder, S. M. Keable, A. E. Cohen, M. W. Ratzloff, S. G. Williams, B. Ginovska, N. Kumar, J. Song, S. E. McPhillips, C. M. Davidson, A. Y. Lyubimov, N. Pence, G. J. Schut, A. K. Jones, S. M. Soltis, M. W. W. Adams, S. Raugei, P. W. King and J. W. Peters. 2020. "Tuning Catalytic Bias of Hydrogen Gas Producing Hydrogenases," Journal of the American Chemical Society 142(3), 1227-1235.Environmental Molecular Sciences Laboratory, Stanford Synchrotron Radiation LightsourceStructural Molecular Biology ResourceX-ray Macromolecular Crystallography, Synchrotron Infrared Hyperspectral ImagingArtz, J. H., O. A. Zadvornyy, D. W. Mulder, S. M. Keable, A. E. Cohen, M. W. Ratzloff, S. G. Williams, B. Ginovska, N. Kumar, J. Song, S. E. McPhillips, C. M. Davidson, A. Y. Lyubimov, N. Pence, G. J. Schut, A. K. Jones, S. M. Soltis, M. W. W. Adams, S. Raugei, P. W. King and J. W. PetersTuning Catalytic Bias of Hydrogen Gas Producing HydrogenasesJournal of the American Chemical Society142(3), 1227-123510.1021/jacs.9b08756(related highlight)
2020Ashraf, M. A., K. Umetsu, O. Ponomarenko, M. Saito, M. Aslam, O. Antipova, N. Dolgova, C. D. Kiani, S. Nehzati, K. Tanoi, K. Minegishi, K. Nagatsu, T. Kamiya, T. Fujiwara, C. Luschnig, K. Tanino, I. Pickering, G. N. George and A. Rahman. PIN FORMED 2 Modulates the Transport of Arsenite in Arabidopsis thaliana. Plant Communications 1(3), 100009.Stanford Synchrotron Radiation LightsourceAshraf, M. A., K. Umetsu, O. Ponomarenko, M. Saito, M. Aslam, O. Antipova, N. Dolgova, C. D. Kiani, S. Nehzati, K. Tanoi, K. Minegishi, K. Nagatsu, T. Kamiya, T. Fujiwara, C. Luschnig, K. Tanino, I. Pickering, G. N. George and A. RahmanPIN FORMED 2 Modulates the Transport of Arsenite in Arabidopsis thalianaPlant Communications1(3), 10000910.1016/j.xplc.2019.100009
2020Astete, C. E., J. U. De Mel, S. Gupta, Y. Noh, M. Bleuel, G. J. Schneider and C. M. Sabliov. Lignin-Graft-Poly(lactic- co-glycolic), Acid Biopolymers for Polymeric Nanoparticle Synthesis. ACS Omega 5(17), 9892-9902.Stanford Synchrotron Radiation LightsourceAstete, C. E., J. U. De Mel, S. Gupta, Y. Noh, M. Bleuel, G. J. Schneider and C. M. SabliovLignin-Graft-Poly(lactic- co-glycolic), Acid Biopolymers for Polymeric Nanoparticle SynthesisACS Omega5(17), 9892-990210.1021/acsomega.0c00168
2020Astner, A. F., D. G. Hayes, S. V. Pingali, H. M. O’Neill, K. C. Littrell, B. R. Evans and V. S. Urban. Effects of soil particles and convective transport on dispersion and aggregation of nanoplastics via small-angle neutron scattering (SANS), and ultra SANS (USANS). PLoS ONE 15(44384).Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Astner, A. F., D. G. Hayes, S. V. Pingali, H. M. O’Neill, K. C. Littrell, B. R. Evans and V. S. UrbanEffects of soil particles and convective transport on dispersion and aggregation of nanoplastics via small-angle neutron scattering (SANS), and ultra SANS (USANS), PLoS ONE15(44384), 10.1371/journal.pone.0235893
2020Bailey, J. B. and F. A. Tezcan. Tunable and Cooperative Thermomechanical Properties of Protein-Metal-Organic Frameworks. Journal of the American Chemical Society 142(41), 17265-17270.Stanford Synchrotron Radiation LightsourceBailey, J. B. and F. A. TezcanTunable and Cooperative Thermomechanical Properties of Protein-Metal-Organic FrameworksJournal of the American Chemical Society142(41), 17265-1727010.1021/jacs.0c07835
2020Banda, D.M., Pereira, J.H., Liu, A.K.A et al., Novel bacterial clade reveals origin of form I Rubisco. Nature Plants 6 1158—1166ALSStructurally Integrated Biology for the Life Sciences X-ray Macromolecular Crystallography (MX), Solution X-ray Scattering (SAXS)Banda, D.M., Pereira, J.H., Liu, A.K.A et al. Novel bacterial clade reveals origin of form I RubiscoNature Plants6 1158—116610.1038/s41477-020-00762-4(related highlight) (feature story)
2020Banerjee, S., A. Draksharapu, P. M. Crossland, R. Fan, Y. Guo, M. Swart and L. Que. Sc3+-Promoted O-O Bond Cleavage of a (μ-1,2-Peroxo), diiron(III), Species Formed from an Iron(II), Precursor and O2 to Generate a Complex with an FeIV2(μ-O), 2Core. Journal of the American Chemical Society 142(9), 4285-4297.Stanford Synchrotron Radiation LightsourceBanerjee, S., A. Draksharapu, P. M. Crossland, R. Fan, Y. Guo, M. Swart and L. QueSc3+-Promoted O-O Bond Cleavage of a (μ-1,2-Peroxo), diiron(III), Species Formed from an Iron(II), Precursor and O2 to Generate a Complex with an FeIV2(μ-O), 2CoreJournal of the American Chemical Society142(9), 4285-429710.1021/jacs.9b12081
2020Baumhardt, J. M., J. S. Walker, Y. Lee, B. Shakya, C. A. Brautigam, R. Lapalombella, N. Grishin and Y. M. Chook. Recognition of nuclear export signals by CRM1 carrying the oncogenic E571K mutation. Molecular Biology of the Cell 31(17), 1879-1891.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Baumhardt, J. M., J. S. Walker, Y. Lee, B. Shakya, C. A. Brautigam, R. Lapalombella, N. Grishin and Y. M. ChookRecognition of nuclear export signals by CRM1 carrying the oncogenic E571K mutationMolecular Biology of the Cell31(17), 1879-189110.1091/mbc.E20-04-0233
2020Bernstei, H. J., A. Forster, A. Bhowmick, A. S. Brewste, S. Brockhauser, L. Gelisio, D. R. Hal, F. Leonarski, V. Mariani, G. Santoni, C. Vonrhein and G. Winter. Gold Standard for macromolecular crystallography diffraction data. IUCrJ 7.National Synchrotron Light Source IICenter for BioMolecular StructureX-ray Macromolecular Crystallography (MX)Bernstei, H. J., A. Forster, A. Bhowmick, A. S. Brewste, S. Brockhauser, L. Gelisio, D. R. Hal, F. Leonarski, V. Mariani, G. Santoni, C. Vonrhein and G. WinterGold Standard for macromolecular crystallography diffraction dataIUCrJ710.1107/S2052252520008672
2020Bernstein, H. J., L. C. Andrews, J. A. Diaz, J. Jakoncic, T. Nguyen, N. K. Sauter, A. S. Soares, J. Y. Wei, M. R. Wlodek and M. A. Xerri. Best practices for high data-rate macromolecular crystallography (HDRMX). Structural Dynamics 7(1).National Synchrotron Light Source IICenter for BioMolecular StructureX-ray Macromolecular Crystallography (MX)Bernstein, H. J., L. C. Andrews, J. A. Diaz, J. Jakoncic, T. Nguyen, N. K. Sauter, A. S. Soares, J. Y. Wei, M. R. Wlodek and M. A. XerriBest practices for high data-rate macromolecular crystallography (HDRMX), Structural Dynamics7(1), 10.1063/1.5128498
2020Boiteux, C., D. J. Posson, T. W. Allen and C. M. Nimigean. Selectivity filter ion binding affinity determines inactivation in a potassium channel. Proceedings of the National Academy of Sciences of the United States of America 117(47), 29968-29978.Stanford Synchrotron Radiation LightsourceBoiteux, C., D. J. Posson, T. W. Allen and C. M. NimigeanSelectivity filter ion binding affinity determines inactivation in a potassium channelProceedings of the National Academy of Sciences of the United States of America117(47), 29968-2997810.1073/pnas.2009624117
2020Brunette, T. J., M. J. Bick, J. M. Hansen, C. M. Chow, J. M. Kollman and D. Baker. Modular repeat protein sculpting using rigid helical junctions. Proceedings of the National Academy of Sciences of the United States of America 117(16), 8870-8875.Advanced Light SourceStructurally Integrated Biology for the Life SciencesBrunette, T. J., M. J. Bick, J. M. Hansen, C. M. Chow, J. M. Kollman and D. BakerModular repeat protein sculpting using rigid helical junctionsProceedings of the National Academy of Sciences of the United States of America117(16), 8870-887510.1073/pnas.1908768117
2020Burton, A. J., M. Haugbro, E. Parisi and T. W. Muir. Live-cell protein engineering with an ultra-short split intein. Proceedings of the National Academy of Sciences of the United States of America 117(22), 12041-12049.National Synchrotron Light Source IICenter for BioMolecular StructureX-ray Macromolecular Crystallography (MX)Burton, A. J., M. Haugbro, E. Parisi and T. W. MuirLive-cell protein engineering with an ultra-short split inteinProceedings of the National Academy of Sciences of the United States of America117(22), 12041-1204910.1073/pnas.2003613117
2020Carpenter, J. M., F. Zhong, M. J. Ragusa, R. O. Louro, D. A. Hogan and E. V. Pletneva. Structure and redox properties of the diheme electron carrier cytochrome c4 from Pseudomonas aeruginosa. Journal of Inorganic Biochemistry 203.National Synchrotron Light Source IICenter for BioMolecular StructureX-ray Macromolecular Crystallography (MX)Carpenter, J. M., F. Zhong, M. J. Ragusa, R. O. Louro, D. A. Hogan and E. V. PletnevaStructure and redox properties of the diheme electron carrier cytochrome c4 from Pseudomonas aeruginosaJournal of Inorganic Biochemistry203, 10.1016/j.jinorgbio.2019.110889
2020Catlin, D. S., C. T. Reidl, T. R. Trzupek, R. B. Silverman, B. L. Cannon, D. P. Becker and D. Liu. (S), -4-Amino-5-phenoxypentanoate designed as a potential selective agonist of the bacterial transcription factor GabR. Protein Science 29(8), 1816-1828.Advanced Photon SourceStructural Biology CenterStructural Biology Center X-ray Macromolecular Crystallography (MX)Catlin, D. S., C. T. Reidl, T. R. Trzupek, R. B. Silverman, B. L. Cannon, D. P. Becker and D. Liu(S), -4-Amino-5-phenoxypentanoate designed as a potential selective agonist of the bacterial transcription factor GabRProtein Science29(8), 1816-182810.1002/pro.3905
2020Chen, H., D. Lu, G. Shang, G. Gao and X. Zhang. Structural and functional analyses of the FAM46C/Plk4 complex. Structure 28(8), 910-921.e4.Advanced Photon SourceStructural Biology CenterStructural Biology Center X-ray Macromolecular Crystallography (MX)Chen, H., D. Lu, G. Shang, G. Gao and X. ZhangStructural and functional analyses of the FAM46C/Plk4 complexStructure28(8), 910-921.e410.1016/j.str.2020.04.023
2020Chen, S., L. Jiao, X. Liu, X. Yang and X. Liu. A Dimeric Structural Scaffold for PRC2-PCL Targeting to CpG Island Chromatin. Molecular Cell 77(6), 1265-1278.e7.Advanced Photon SourceStructural Biology CenterStructural Biology Center X-ray Macromolecular Crystallography (MX)Chen, S., L. Jiao, X. Liu, X. Yang and X. LiuA Dimeric Structural Scaffold for PRC2-PCL Targeting to CpG Island ChromatinMolecular Cell77(6), 1265-1278.e710.1016/j.molcel.2019.12.019
2020Chen, Z., R. D. Kibler, A. Hunt, F. Busch, J. Pearl, M. Jia, Z. L. VanAernum, B. I. M. Wicky, G. Dods, H. Liao, M. S. Wilken, C. Ciarlo, S. Green, H. El-Samad, J. Stamatoyannopoulos, V. H. Wysocki, M. C. Jewett, S. E. Boyken and D. Baker. De novo design of protein logic gates. Science 368(6486), .DOI: 10.1126/science.aay2790Advanced Light SourceStructurally Integrated Biology for the Life Sciences Solution X-ray Scattering (SAXS)Chen, Z., R. D. Kibler, A. Hunt, F. Busch, J. Pearl, M. Jia, Z. L. VanAernum, B. I. M. Wicky, G. Dods, H. Liao, M. S. Wilken, C. Ciarlo, S. Green, H. El-Samad, J. Stamatoyannopoulos, V. H. Wysocki, M. C. Jewett, S. E. Boyken and D. BakerDe novo design of protein logic gatesScience368(6486), 10.1126/science.aay2790
2020Choukate, K., A. Gupta, B. Basu, K. Virk, M. Ganguli and B. Chaudhuri. Higher order assembling of the mycobacterial polar growth factor DivIVA/Wag31. Journal of Structural Biology 209(2), .DOI: 10.1016/j.jsb.2019.107429Stanford Synchrotron Radiation LightsourceChoukate, K., A. Gupta, B. Basu, K. Virk, M. Ganguli and B. ChaudhuriHigher order assembling of the mycobacterial polar growth factor DivIVA/Wag31Journal of Structural Biology209(2), 10.1016/j.jsb.2019.107429
2020Chu, Y. S., W. K. Lee, R. Tappero, M. Ge, X. Huang, X. Xiao, H. Yan, P. Northrup, J. Thieme, A. M. Kiss, G. J. Williams, Y. Yang, S. L. Nicholas, A. Pattammattel, R. Smith, P. Ilinski and Y. Du. Multimodal, Multidimensional, and Multiscale X-ray Imaging at the National Synchrotron Light Source II. Synchrotron Radiation News 33(3), 29-36.National Synchrotron Light Source IIChu, Y. S., W. K. Lee, R. Tappero, M. Ge, X. Huang, X. Xiao, H. Yan, P. Northrup, J. Thieme, A. M. Kiss, G. J. Williams, Y. Yang, S. L. Nicholas, A. Pattammattel, R. Smith, P. Ilinski and Y. DuMultimodal, Multidimensional, and Multiscale X-ray Imaging at the National Synchrotron Light Source IISynchrotron Radiation News33(3), 29-3610.1080/08940886.2020.1751520
2020Cifuentes-Castro, V., C. Rodríguez-Almazán, J. Silva-Sánchez and E. Rudiño-Piñera. The crystal structure of ESBL TLA-1 in complex with clavulanic acid reveals a second acylation site. Biochemical and Biophysical Research Communications 522(2), 545-551.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Cifuentes-Castro, V., C. Rodríguez-Almazán, J. Silva-Sánchez and E. Rudiño-PiñeraThe crystal structure of ESBL TLA-1 in complex with clavulanic acid reveals a second acylation siteBiochemical and Biophysical Research Communications522(2), 545-55110.1016/j.bbrc.2019.11.138
2020Daruwalla, A., J. Zhang, H. J. Lee, N. Khadka, E. R. Farquhar, W. Shi, J. von Lintig and P. D. Kiser. Structural basis for carotenoid cleavage by an archaeal carotenoid dioxygenase. Proceedings of the National Academy of Sciences of the United States of America 117(33), 19914-19925.National Synchrotron Light Source II, Stanford Synchrotron Radiation LightsourceCenter for BioMolecular StructureX-ray Macromolecular Crystallography (MX)Daruwalla, A., J. Zhang, H. J. Lee, N. Khadka, E. R. Farquhar, W. Shi, J. von Lintig and P. D. KiserStructural basis for carotenoid cleavage by an archaeal carotenoid dioxygenaseProceedings of the National Academy of Sciences of the United States of America117(33), 19914-1992510.1073/PNAS.2004116117
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2020Deka, R. K., W. Z. Liu, M. V. Norgard and C. A. Brautigam. Biophysical and biochemical characterization of tp0037, a d-lactate dehydrogenase, supports an acetogenic energy conservation pathway in Treponema pallidum. mBio 11(5), 44213.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Deka, R. K., W. Z. Liu, M. V. Norgard and C. A. BrautigamBiophysical and biochemical characterization of tp0037, a d-lactate dehydrogenase, supports an acetogenic energy conservation pathway in Treponema pallidummBio11(5), 4421310.1128/mBio.02249-20
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2020DiPasquale, M., M. H. L. Nguyen, B. W. Rickeard, N. Cesca, C. Tannous, S. R. Castillo, J. Katsaras, E. G. Kelley, F. A. Heberle and D. Marquardt. The antioxidant vitamin E as a membrane raft modulator: Tocopherols do not abolish lipid domains. Biochimica et Biophysica Acta - Biomembranes 1862(8), 183189.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)DiPasquale, M., M. H. L. Nguyen, B. W. Rickeard, N. Cesca, C. Tannous, S. R. Castillo, J. Katsaras, E. G. Kelley, F. A. Heberle and D. MarquardtThe antioxidant vitamin E as a membrane raft modulator: Tocopherols do not abolish lipid domainsBiochimica et Biophysica Acta - Biomembranes1862(8), 18318910.1016/j.bbamem.2020.183189
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2020Dykes, G. E., N. R. Chari and A. L. Seyfferth. Si-induced DMA desorption is not the driver for enhanced DMA availability after Si addition to flooded soils. Science of the Total Environment 739.Stanford Synchrotron Radiation LightsourceDykes, G. E., N. R. Chari and A. L. SeyfferthSi-induced DMA desorption is not the driver for enhanced DMA availability after Si addition to flooded soilsScience of the Total Environment73910.1016/j.scitotenv.2020.139906
2020Fang, L., J. Vilas-Boas, S. Chakraborty, Z. E. Potter, A. C. Register, M. A. Seeliger and D. J. Maly. How ATP-Competitive Inhibitors Allosterically Modulate Tyrosine Kinases That Contain a Src-like Regulatory Architecture. ACS Chemical Biology 15(7), 2005-2016.National Synchrotron Light Source IICenter for BioMolecular StructureX-ray Macromolecular Crystallography (MX)Fang, L., J. Vilas-Boas, S. Chakraborty, Z. E. Potter, A. C. Register, M. A. Seeliger and D. J. MalyHow ATP-Competitive Inhibitors Allosterically Modulate Tyrosine Kinases That Contain a Src-like Regulatory ArchitectureACS Chemical Biology15(7), 2005-201610.1021/acschembio.0c00429
2020Forbes, D. L., K. M. Meneely, A. S. Chilton, A. L. Lamb and H. R. Ellis. The 3-His Metal Coordination Site Promotes the Coupling of Oxygen Activation to Cysteine Oxidation in Cysteine Dioxygenase. Biochemistry 59(21), 2022-2031.Stanford Synchrotron Radiation LightsourceForbes, D. L., K. M. Meneely, A. S. Chilton, A. L. Lamb and H. R. EllisThe 3-His Metal Coordination Site Promotes the Coupling of Oxygen Activation to Cysteine Oxidation in Cysteine DioxygenaseBiochemistry59(21), 2022-203110.1021/acs.biochem.9b01085
2020Gamble, A. V., P. A. Northrup and D. L. Sparks. Elucidation of soil phosphorus speciation in mid-Atlantic soils using synchrotron-based microspectroscopic techniques. Journal of Environmental Quality 49(1), 184-193.National Synchrotron Light Source II, Stanford Synchrotron Radiation LightsourceGamble, A. V., P. A. Northrup and D. L. SparksElucidation of soil phosphorus speciation in mid-Atlantic soils using synchrotron-based microspectroscopic techniquesJournal of Environmental Quality49(1), 184-19310.1002/jeq2.20027
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2020Haja, D. K., C. H. Wu, O. Ponomarenko, F. L. Poole, G. N. George and M. W. W. Adams. Improving Arsenic Tolerance of Pyrococcus furiosus by Heterologous Expression of a Respiratory Arsenate Reductase. Applied and environmental microbiology 86(21).Stanford Synchrotron Radiation LightsourceHaja, D. K., C. H. Wu, O. Ponomarenko, F. L. Poole, G. N. George and M. W. W. AdamsImproving Arsenic Tolerance of Pyrococcus furiosus by Heterologous Expression of a Respiratory Arsenate ReductaseApplied and environmental microbiology86(21), 10.1128/AEM.01728-20
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2020Hanik, N., M. Best, M. J. Schueller, R. Tappero and R. A. Ferrieri. Defense priming in Nicotiana tabacum accelerates and amplifies ‘new’ C/N fluxes in key amino acid biosynthetic pathways. Plants 9(7), 44214.National Synchrotron Light Source IIHanik, N., M. Best, M. J. Schueller, R. Tappero and R. A. FerrieriDefense priming in Nicotiana tabacum accelerates and amplifies ‘new’ C/N fluxes in key amino acid biosynthetic pathwaysPlants9(7), 4421410.3390/plants9070851
2020He, H., G. Bian, C. J. Herbst-Gervasoni, T. Mori, S. A. Shinsky, A. Hou, X. Mu, M. Huang, S. Cheng, Z. Deng, D. W. Christianson, I. Abe and T. Liu. Discovery of the cryptic function of terpene cyclases as aromatic prenyltransferases. Nature Communications 11(1).Stanford Synchrotron Radiation LightsourceHe, H., G. Bian, C. J. Herbst-Gervasoni, T. Mori, S. A. Shinsky, A. Hou, X. Mu, M. Huang, S. Cheng, Z. Deng, D. W. Christianson, I. Abe and T. LiuDiscovery of the cryptic function of terpene cyclases as aromatic prenyltransferasesNature Communications11(1), 10.1038/s41467-020-17642-2
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2020Herrmann, J., P. N. Li, F. Jabbarpour, A. C. K. Chan, I. Rajkovic, T. Matsui, L. Shapiro, J. Smit, T. M. Weiss, M. E. P. Murphy and S. Wakatsuki. 2020. "A Bacterial Surface Layer Protein Exploits Multistep Crystallization for Rapid Self-Assembly," Proceedings of the National Academy of Sciences of the United States of America 117(1), 388–94.Advanced Light Source, Stanford Synchrotron Radiation LightsourceStructurally Integrated Biology for the Life Sciences, Structural Molecular Biology ResourceCryo-Electron Microscopy, Solution X-ray Scattering, X-ray Macromolecular CrystallographyHerrmann, J., P. N. Li, F. Jabbarpour, A. C. K. Chan, I. Rajkovic, T. Matsui, L. Shapiro, J. Smit, T. M. Weiss, M. E. P. Murphy and S. WakatsukiA bacterial surface layer protein exploits multistep crystallization for rapid self-assemblyProceedings of the National Academy of Sciences of the United States of America117(1), 388-39410.1073/pnas.1909798116(related highlight)
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2020Hille, R., T. Young, D. Niks, S. Hakopian, T. K. Tam, X. Yu, A. Mulchandani and G. M. Blaha. Structure: Function studies of the cytosolic, Mo-and NAD+-dependent formate dehydrogenase from Cupriavidus necator. Inorganics 8(8).Stanford Synchrotron Radiation LightsourceHille, R., T. Young, D. Niks, S. Hakopian, T. K. Tam, X. Yu, A. Mulchandani and G. M. BlahaStructure: Function studies of the cytosolic, Mo-and NAD+-dependent formate dehydrogenase from Cupriavidus necatorInorganics8(8), 10.3390/INORGANICS8070041
2020Hiroi, T., K. Hirosawa, Y. Okazumi, S. V. Pingali and M. Shibayama. Mechanism of heat-induced gelation for ovalbuminunder acidic conditions and the effect of peptides. Polymer Journal 52(11), 1263-1272.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Hiroi, T., K. Hirosawa, Y. Okazumi, S. V. Pingali and M. ShibayamaMechanism of heat-induced gelation for ovalbuminunder acidic conditions and the effect of peptidesPolymer Journal52(11), 1263-127210.1038/s41428-020-0382-1
2020Holman, E. A., Y. S. Fang, L. Chen, M. DeWeese, H. Y. N. Holman and P. W. Sternberg. Autonomous adaptive data acquisition for scanning hyperspectral imaging. Communications Biology 3(1).Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramSynchrotron Infrared Hyperspectral ImagingHolman, E. A., Y. S. Fang, L. Chen, M. DeWeese, H. Y. N. Holman and P. W. SternbergAutonomous adaptive data acquisition for scanning hyperspectral imagingCommunications Biology3(1), 10.1038/s42003-020-01385-3
2020Hutchison, J. M., K.-C. Shih, H. A. Scheidt, S. M. Fantin, K. F. Parson, G. A. Pantelopulos, H. R. Harrington, K. F. Mittendorf, S. Qian, R. A. Stein, S. E. Collier, M. G. Chambers, J. Katsaras, M. W. Voehler, B. T. Ruotolo, D. Huster, R. L. McFeeters, J. E. Straub, M.-P. Nieh and C. R. Sanders. 2020. "Bicelles Rich in Both Sphingolipids and Cholesterol and their Use in Studies of Membrane Proteins," Journal of the American Chemical Society 142, 12715—29.National Synchrotron Light Source II, Spallation Neutron Source/High Flux Isotope ReactorCenter for BioMolecular Structure, Center for Structural Molecular BiologySolution X-ray Scattering (SAXS), Small-Angle Neutron Scattering (SANS)Hutchison, J.M., K.-C. Shih, H. A. Scheidt, S. M. Fantin, et al.Bicelles rich in both sphingolipids and cholesterol and their use in studies of membrane proteinsJournal of the American Chemical Society142, 12715-1272910.1021/jacs.0c04669(related highlight) (feature story)
2020Ibrahim, M., T. Fransson, R. Chatterjee, M. H. Cheah, R. Hussein, L. Lassalle, K. D. Sutherlin, I. D. Young, F. D. Fuller, S. Gul, I. S. Kim, P. S. Simon, C. de Lichtenberg, P. Chernev, I. Bogacz, C. C. Pham, A. M. Orville, N. Saichek, T. Northen, A. Batyuk, S. Carbajo, R. Alonso-Mori, K. Tono, S. Owada, A. Bhowmick, R. Bolotovsky, D. Mendez, N. W. Moriarty, J. M. Holton, H. Dobbek, A. S. Brewster, P. D. Adams, N. K. Sauter, U. Bergmann, A. Zouni, J. Messinger, J. Kern, V. K. Yachandra and J. Yano. Untangling the sequence of events during the S2 → S3 transition in photosystem II and implications for the water oxidation mechanism. Proceedings of the National Academy of Sciences of the United States of America 117(23), 12624-12635.Stanford Synchrotron Radiation LightsourceIbrahim, M., T. Fransson, R. Chatterjee, M. H. Cheah, R. Hussein, L. Lassalle, K. D. Sutherlin, I. D. Young, F. D. Fuller, S. Gul, I. S. Kim, P. S. Simon, C. de Lichtenberg, P. Chernev, I. Bogacz, C. C. Pham, A. M. Orville, N. Saichek, T. Northen, A. Batyuk, S. Carbajo, R. Alonso-Mori, K. Tono, S. Owada, A. Bhowmick, R. Bolotovsky, D. Mendez, N. W. Moriarty, J. M. Holton, H. Dobbek, A. S. Brewster, P. D. Adams, N. K. Sauter, U. Bergmann, A. Zouni, J. Messinger, J. Kern, V. K. Yachandra and J. YanoUntangling the sequence of events during the S2 → S3 transition in photosystem II and implications for the water oxidation mechanismProceedings of the National Academy of Sciences of the United States of America117(23), 12624-1263510.1073/pnas.2000529117
2020Ingersol, L. J., J. Yang, K. Kc, A. Pokhrel, A. V. Astashkin, J. H. Weiner, C. A. Johnston and M. L. Kirk. Addressing Ligand-Based Redox in Molybdenum-Dependent Methionine Sulfoxide Reductase. Journal of the American Chemical Society 142(6), 2721-2725.Stanford Synchrotron Radiation LightsourceIngersol, L. J., J. Yang, K. Kc, A. Pokhrel, A. V. Astashkin, J. H. Weiner, C. A. Johnston and M. L. KirkAddressing Ligand-Based Redox in Molybdenum-Dependent Methionine Sulfoxide ReductaseJournal of the American Chemical Society142(6), 2721-272510.1021/jacs.9b11762
2020James, A. K., S. Nehzati, N. V. Dolgova, D. Sokaras, T. Kroll, K. Eto, J. L. O'Donoghue, G. E. Watson, G. J. Myers, P. H. Krone, I. J. Pickering and G. N. George. Rethinking the Minamata Tragedy: What Mercury Species Was Really Responsible? Environmental Science & Technology 54(5), 2726-2733.Stanford Synchrotron Radiation LightsourceJames, A. K., S. Nehzati, N. V. Dolgova, D. Sokaras, T. Kroll, K. Eto, J. L. O'Donoghue, G. E. Watson, G. J. Myers, P. H. Krone, I. J. Pickering and G. N. GeorgeRethinking the Minamata Tragedy: What Mercury Species Was Really Responsible?Environmental Science & Technology54(5), 2726-273310.1021/acs.est.9b06253
2020Jiao, L., M. Shubbar, X. Yang, Q. Zhang, S. Chen, Q. Wu, Z. Chen, J. Rizo and X. Liu. A partially disordered region connects gene repression and activation functions of EZH2. Proceedings of the National Academy of Sciences of the United States of America 117(29), 16992-17002.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Jiao, L., M. Shubbar, X. Yang, Q. Zhang, S. Chen, Q. Wu, Z. Chen, J. Rizo and X. LiuA partially disordered region connects gene repression and activation functions of EZH2Proceedings of the National Academy of Sciences of the United States of America117(29), 16992-1700210.1073/pnas.1914866117
2020Jones, M. E., R. E. Lacroix, J. Zeigler, S. C. Ying, P. S. Nico and M. Keiluweit. Enzymes, Manganese, or Iron? Drivers of Oxidative Organic Matter Decomposition in Soils. Environmental Science & Technology 54(21), 14114-14123.Stanford Synchrotron Radiation LightsourceJones, M. E., R. E. Lacroix, J. Zeigler, S. C. Ying, P. S. Nico and M. KeiluweitEnzymes, Manganese, or Iron? Drivers of Oxidative Organic Matter Decomposition in SoilsEnvironmental Science & Technology54(21), 14114-1412310.1021/acs.est.0c04212
2020Jung, H., N. K. Rayala and S. Lee. Translesion synthesis of the major nitrogen mustard-induced DNA lesion by human DNA polymerase η. Biochemical Journal 477(23), 4543-4558.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Jung, H., N. K. Rayala and S. LeeTranslesion synthesis of the major nitrogen mustard-induced DNA lesion by human DNA polymerase ηBiochemical Journal477(23), 4543-455810.1042/BCJ20200767
2020Kakkis, A., D. Gagnon, J. Esselborn, R. D. Britt and F. A. Tezcan. Metal-Templated Design of Chemically Switchable Protein Assemblies with High-Affinity Coordination Sites. Angewandte Chemie - International Edition 59(49), 21940-21944.Stanford Synchrotron Radiation LightsourceKakkis, A., D. Gagnon, J. Esselborn, R. D. Britt and F. A. TezcanMetal-Templated Design of Chemically Switchable Protein Assemblies with High-Affinity Coordination SitesAngewandte Chemie - International Edition59(49), 21940-2194410.1002/anie.202009226
2020Kamennaya, N. A., J. Gray, S. Ito, M. Kainuma, M. V. Nguyen, I. V. Khilyas, G. Birarda, F. Bernie, M. Hunt, D. Vasadia, J. Lin, H. Y. Holman, T. Torok and M. F. Cohen. Deconstruction of plant biomass by a Cellulomonas strain isolated from an ultra-basic (lignin-stripping), spring. Archives of Microbiology 202(5), 1077-1084.Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramSynchrotron Infrared Hyperspectral ImagingKamennaya, N. A., J. Gray, S. Ito, M. Kainuma, M. V. Nguyen, I. V. Khilyas, G. Birarda, F. Bernie, M. Hunt, D. Vasadia, J. Lin, H. Y. Holman, T. Torok and M. F. CohenDeconstruction of plant biomass by a Cellulomonas strain isolated from an ultra-basic (lignin-stripping), springArchives of Microbiology202(5), 1077-108410.1007/s00203-020-01816-z
2020Kang, W., C. C. Lee, A. J. Jasniewski, M. W. Ribbe and Y. Hu. Structural evidence for a dynamic metallocofactor during N2 reduction by Mo-nitrogenase. Science 368(6497), 1381-1385.Stanford Synchrotron Radiation LightsourceKang, W., C. C. Lee, A. J. Jasniewski, M. W. Ribbe and Y. HuStructural evidence for a dynamic metallocofactor during N2 reduction by Mo-nitrogenaseScience368(6497), 1381-138510.1126/science.aaz6748
2020Kelly, J. A., Olson, A. N., Neupane, K., Munshi, S., San Emeterio, J., Pollack, L., Woodside, M. T., Dinman, J. D. "Structural and functional conservation of the programmed −1 ribosomal frameshift signal of SARS coronavirus 2 (SARS-CoV-2)." J. Biol. Chem. 295(31):10741-10748 (2020).NSLSIICenter for BioMolecular Structure Solution X-ray ScatteringKelly, J. A., Olson, A. N., Neupane, K., Munshi, S., San Emeterio, J., Pollack, L., Woodside, M. T., Dinman, J. D.Structural and functional conservation of the programmed −1 ribosomal frameshift signal of SARS coronavirus 2 (SARS-CoV-2)J. Biol. Chem.295(31):10741-1074810.1074/jbc.AC120.013449(feature story) (related highlight)
2020Khan, Z.M., Real, A. M., Marsiglia, W. M., Chow, A., Duffy, M. E., Yerabolu, J. R., Scopton, A. P., Dar, A. C. "Structural basis for the action of the drug trametinib at KSR-bound MEK."588, 509–514(2020).APS, NSLSIIX-ray Macromolecular Crystallography (MX)Khan, Z.M., Real, A. M., Marsiglia, W. M., Chow, A., Duffy, M. E., Yerabolu, J. R., Scopton, A. P., Dar, A. C.Structural basis for the action of the drug trametinib at KSR-bound MEKNature588, 509–51410.1038/s41586-020-2760-4(feature story) (related highlight)
2020Kim, Y., R. Jedrzejczak, N. I. Maltseva, M. Wilamowski, M. Endres, A. Godzik, K. Michalska, A. Joachimiak. 2020. "Crystal structure of Nsp15 endoribonuclease NendoU from SARS-CoV-2," Protein Science 29 (7), 1596–605.Advanced Photon SourceStructural Biology Center X-Ray Macromolecular Crystallography (MX)Kim, Youngchang, Jedrzejczak, Robert, Maltseva, Natalia I., Wilamowski, Mateusz, Endres, Michael, Godzik, Adam, Michalska, Karolina, Joachimiak, AndrzejCrystal structure of Nsp15 endoribonuclease NendoU from SARS-CoV-2Protein Sci.29 (7), 1596-160510.1002/pro.3873(related highlight)
2020Kim, Youngchang, et al. "Structural and biochemical analysis of the metallo‐[beta]‐lactamase L1 from emerging pathogen Stenotrophomonas maltophilia revealed the subtle but distinct di‐metal scaffold for catalytic activity," Protein Sci. 29 (3), 723-743 (2020).APSStructural Biology Center X-ray Macromolecular Crystallography (MX)10.1002/pro.3804
2020Kneller, Daniel W., et al. "Room-temperature X-ray crystallography reveals the oxidation and reactivity of cysteine residues in SARS-CoV-2 3CL M[superscript pro]: insights into enzyme mechanism and drug design," IUCrJ 7 (6), 1028-1035 (2020). 10.1107/S2052252520012634APSStructural Biology Center X-ray Macromolecular Crystallography (MX)10.1107/S2052252520012634
2020Kneller, Daniel W., et al. "Structural plasticity of SARS-CoV-2 3CL M[superscript pro] active site cavity revealed by room temperature X-ray crystallography," Nat. Commun. 11, 3202 (2020).APSStructural Biology Center X-ray Macromolecular Crystallography (MX)10.1038/s41467-020-16954-7
2020Koebke, K. J., V. S. Alfaro, T. B. J. Pinter, A. Deb, N. Lehnert, C. Tard, J. E. Penner-Hahn and V. L. Pecoraro. Traversing the Red-Green-Blue Color Spectrum in Rationally Designed Cupredoxins. Journal of the American Chemical Society 142(36), 15282-15294.Stanford Synchrotron Radiation LightsourceKoebke, K. J., V. S. Alfaro, T. B. J. Pinter, A. Deb, N. Lehnert, C. Tard, J. E. Penner-Hahn and V. L. PecoraroTraversing the Red-Green-Blue Color Spectrum in Rationally Designed CupredoxinsJournal of the American Chemical Society142(36), 15282-1529410.1021/jacs.0c04757
2020Laureanti, J. A., B. Ginovska, G. W. Buchko, G. K. Schenter, M. Hebert, O. A. Zadvornyy, J. W. Peters and W. J. Shaw. 2020. "A Positive Charge in the Outer Coordination Sphere of an Artificial Enzyme Increases CO2 Hydrogenation," Organometallics 39(9), 1532–44.Environmental Molecular Sciences Laboratory, Stanford Synchrotron Radiation LightsourceStructural Molecular Biology ResourceX-ray Macromolecular CrystallographyLaureanti, J. A., B. Ginovska, G. W. Buchko, G. K. Schenter, M. Hebert, O. A. Zadvornyy, J. W. Peters and W. J. ShawA Positive Charge in the Outer Coordination Sphere of an Artificial Enzyme Increases CO2 HydrogenationOrganometallics39(9), 1532-154410.1021/acs.organomet.9b00843(related highlight)
2020Ledray, A. P., C. M. Krest, T. H. Yosca, K. Mittra and M. T. Green. Ascorbate Peroxidase Compound II Is an Iron(IV), Oxo Species. Journal of the American Chemical Society 142(48), 20419-20425.Stanford Synchrotron Radiation LightsourceLedray, A. P., C. M. Krest, T. H. Yosca, K. Mittra and M. T. GreenAscorbate Peroxidase Compound II Is an Iron(IV), Oxo SpeciesJournal of the American Chemical Society142(48), 20419-2042510.1021/jacs.0c09108
2020Lee, H. B., D. A. Marchiori, R. Chatterjee, P. H. Oyala, J. Yano, R. D. Britt and T. Agapie. S = 3 Ground State for a Tetranuclear MnIV4O4 Complex Mimicking the S3 State of the Oxygen-Evolving Complex. Journal of the American Chemical Society 142(8), 3753-3761.Stanford Synchrotron Radiation LightsourceLee, H. B., D. A. Marchiori, R. Chatterjee, P. H. Oyala, J. Yano, R. D. Britt and T. AgapieS = 3 Ground State for a Tetranuclear MnIV4O4 Complex Mimicking the S3 State of the Oxygen-Evolving ComplexJournal of the American Chemical Society142(8), 3753-376110.1021/jacs.9b10371
2020Lee, S. G., K. Harline, O. Abar, S. O. Akadri, A. G. Bastian, H. Y. S. Chen, M. Duan, C. M. Focht, A. R. Groziak, J. Kao, J. S. Kottapalli, M. C. Leong, J. J. Lin, R. Liu, J. E. Luo, C. M. Meyer, A. F. Mo, S. H. Pahng, V. Penna, C. D. Raciti, A. Srinath, S. Sudhakar, J. D. Tang, B. R. Cox, C. K. Holland, B. Cascella, W. Cruz, S. A. McClerkin, B. N. Kunkel and J. M. Jez. The plant pathogen enzyme AldC is a long-chain aliphatic aldehyde dehydrogenase. Journal of Biological Chemistry 295(40), 13914-13926.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Lee, S. G., K. Harline, O. Abar, S. O. Akadri, A. G. Bastian, H. Y. S. Chen, M. Duan, C. M. Focht, A. R. Groziak, J. Kao, J. S. Kottapalli, M. C. Leong, J. J. Lin, R. Liu, J. E. Luo, C. M. Meyer, A. F. Mo, S. H. Pahng, V. Penna, C. D. Raciti, A. Srinath, S. Sudhakar, J. D. Tang, B. R. Cox, C. K. Holland, B. Cascella, W. Cruz, S. A. McClerkin, B. N. Kunkel and J. M. JezThe plant pathogen enzyme AldC is a long-chain aliphatic aldehyde dehydrogenaseJournal of Biological Chemistry295(40), 13914-1392610.1074/jbc.RA120.014747
2020Lee, S. G., M. S. Chung, A. J. DeMarsilis, C. K. Holland, R. V. Jaswaney, C. Jiang, J. H. P. Kroboth, K. Kulshrestha, R. Z. W. Marcelo, V. M. Meyyappa, G. B. Nelson, J. K. Patel, A. J. Petronio, S. K. Powers, P. R. Qin, M. Ramachandran, D. Rayapati, J. A. Rincon, A. Rocha, J. G. R. N. Ferreira, M. K. Steinbrecher, K. Yao, E. J. Zhang, A. J. Zou, M. Gang, M. Sparks, B. Cascella, W. Cruz and J. M. Jez. Structural and biochemical analysis of phosphoethanolamine methyltransferase from the pine wilt nematode Bursaphelenchus xylophilus. Molecular and Biochemical Parasitology 238.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Lee, S. G., M. S. Chung, A. J. DeMarsilis, C. K. Holland, R. V. Jaswaney, C. Jiang, J. H. P. Kroboth, K. Kulshrestha, R. Z. W. Marcelo, V. M. Meyyappa, G. B. Nelson, J. K. Patel, A. J. Petronio, S. K. Powers, P. R. Qin, M. Ramachandran, D. Rayapati, J. A. Rincon, A. Rocha, J. G. R. N. Ferreira, M. K. Steinbrecher, K. Yao, E. J. Zhang, A. J. Zou, M. Gang, M. Sparks, B. Cascella, W. Cruz and J. M. JezStructural and biochemical analysis of phosphoethanolamine methyltransferase from the pine wilt nematode Bursaphelenchus xylophilusMolecular and Biochemical Parasitology23810.1016/j.molbiopara.2020.111291
2020Li, J., I. Davis, W. P. Griffith and A. Liu. Formation of Monofluorinated Radical Cofactor in Galactose Oxidase through Copper-Mediated C-F Bond Scission. Journal of the American Chemical Society 142(44), 18753-18757.Advanced Photon Source, Stanford Synchrotron Radiation LightsourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Li, J., I. Davis, W. P. Griffith and A. LiuFormation of Monofluorinated Radical Cofactor in Galactose Oxidase through Copper-Mediated C-F Bond ScissionJournal of the American Chemical Society142(44), 18753-1875710.1021/jacs.0c08992
2020Li, K., S. Ali, M. Wojcik, V. de Andrade, X. Huang, H. Yan, Y. S. Chu, E. Nazaretski, A. Pattammattel and C. Jacobsen. Tunable hard x-ray nanofocusing with Fresnel zone plates fabricated using deep etching. Optica 7(5), 410-416.National Synchrotron Light Source IILi, K., S. Ali, M. Wojcik, V. de Andrade, X. Huang, H. Yan, Y. S. Chu, E. Nazaretski, A. Pattammattel and C. JacobsenTunable hard x-ray nanofocusing with Fresnel zone plates fabricated using deep etchingOptica7(5), 410-41610.1364/OPTICA.387445
2020Li, L., T. Li, M. M. L. Arras, P. V. Bonnesen, X. Peng, W. Li and K. Hong. Chain arrangements of selectively deuterated poly(ε-caprolactone), copolymers as revealed by neutron scattering. Polymer 193.Spallation Neutron Source/High Flux Isotope ReactorSpallation Neutron Source/High Flux Isotope Reactor Center for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Li, L., T. Li, M. M. L. Arras, P. V. Bonnesen, X. Peng, W. Li and K. HongChain arrangements of selectively deuterated poly(ε-caprolactone), copolymers as revealed by neutron scatteringPolymer19310.1016/j.polymer.2020.122375
2020Li, L., V. Molodtsov, W. Lin, R. H. Ebright and Y. Zhang. RNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcription. Proceedings of the National Academy of Sciences of the United States of America 117(11), 5801-5809.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Li, L., V. Molodtsov, W. Lin, R. H. Ebright and Y. ZhangRNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcriptionProceedings of the National Academy of Sciences of the United States of America117(11), 5801-580910.1073/pnas.1920747117
2020Lim, H., M. L. Baker, R. E. Cowley, S. Kim, M. Bhadra, M. A. Siegler, T. Kroll, D. Sokaras, T. C. Weng, D. R. Biswas, D. M. Dooley, K. D. Karlin, B. Hedman, K. O. Hodgson and E. I. Solomon. Kβ X-ray Emission Spectroscopy as a Probe of Cu(I), Sites: Application to the Cu(I), Site in Preprocessed Galactose Oxidase. Inorganic Chemistry 59(22), 16567-16581.Stanford Synchrotron Radiation LightsourceLim, H., M. L. Baker, R. E. Cowley, S. Kim, M. Bhadra, M. A. Siegler, T. Kroll, D. Sokaras, T. C. Weng, D. R. Biswas, D. M. Dooley, K. D. Karlin, B. Hedman, K. O. Hodgson and E. I. SolomonKβ X-ray Emission Spectroscopy as a Probe of Cu(I), Sites: Application to the Cu(I), Site in Preprocessed Galactose OxidaseInorganic Chemistry59(22), 16567-1658110.1021/acs.inorgchem.0c02495
2020Lin, C. Y. and S. G. Boxer. Unusual Spectroscopic and Electric Field Sensitivity of Chromophores with Short Hydrogen Bonds: GFP and PYP as Model Systems. Journal of Physical Chemistry B 124(43), 9513-9525.Stanford Synchrotron Radiation LightsourceLin, C. Y. and S. G. BoxerUnusual Spectroscopic and Electric Field Sensitivity of Chromophores with Short Hydrogen Bonds: GFP and PYP as Model SystemsJournal of Physical Chemistry B124(43), 9513-952510.1021/acs.jpcb.0c07730
2020Luna, A., J. Meisel, K. Hsu, S. Russi and D. Fernandez. Protein structural changes on a CubeSat under rocket acceleration profile. npj Microgravity 6(1).Stanford Synchrotron Radiation LightsourceLuna, A., J. Meisel, K. Hsu, S. Russi and D. FernandezProtein structural changes on a CubeSat under rocket acceleration profilenpj Microgravity6(1), 10.1038/s41526-020-0102-3
2020Ma, J., M. Do, M. A. Le Gros, C. S. Peskin, C. A. Larabell, Y. Mori and S. A. Isaacson. Strong intracellular signal inactivation produces sharper and more robust signaling from cell membrane to nucleus. PLoS Computational Biology 16(11).Advanced Light SourceNational Center for X-Ray Tomography Soft X-ray TomographyMa, J., M. Do, M. A. Le Gros, C. S. Peskin, C. A. Larabell, Y. Mori and S. A. IsaacsonStrong intracellular signal inactivation produces sharper and more robust signaling from cell membrane to nucleusPLoS Computational Biology16(11), 10.1371/journal.pcbi.1008356
2020Maguffin, S. C., L. Abu-Ali, R. V. Tappero, J. Pena, J. S. Rohila, A. M. McClung and M. C. Reid. Influence of manganese abundances on iron and arsenic solubility in rice paddy soils. Geochimica et Cosmochimica Acta 276, 50-69.National Synchrotron Light Source IIMaguffin, S. C., L. Abu-Ali, R. V. Tappero, J. Pena, J. S. Rohila, A. M. McClung and M. C. ReidInfluence of manganese abundances on iron and arsenic solubility in rice paddy soilsGeochimica et Cosmochimica Acta276, 50-6910.1016/j.gca.2020.02.012
2020Mak, W. S., X. Wang, R. Arenas, Y. Cui, S. Bertolani, W. Q. Deng, I. Tagkopoulos, D. K. Wilson and J. B. Siegel. Discovery, design, and structural characterization of alkane-producing enzymes across the ferritin-like superfamily. Biochemistry 59(40), 3834-3843.Stanford Synchrotron Radiation LightsourceMak, W. S., X. Wang, R. Arenas, Y. Cui, S. Bertolani, W. Q. Deng, I. Tagkopoulos, D. K. Wilson and J. B. SiegelDiscovery, design, and structural characterization of alkane-producing enzymes across the ferritin-like superfamilyBiochemistry59(40), 3834-384310.1021/acs.biochem.0c00665
2020March, Zachary M., et al. "Therapeutic genetic variation revealed in diverse Hsp104 homologs," eLIFE J. 9, e57457 (2020).APSStructural Biology Center X-ray Macromolecular Crystallography (MX)10.7554/eLife.57457
2020Marquardt, D., F. A. Heberle, J. Pan, X. Cheng, G. Pabst, T. A. Harroun, N. Kučerka and J. Katsaras. The structures of polyunsaturated lipid bilayers by joint refinement of neutron and X-ray scattering data. Chemistry and Physics of Lipids 229.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Marquardt, D., F. A. Heberle, J. Pan, X. Cheng, G. Pabst, T. A. Harroun, N. Kučerka and J. KatsarasThe structures of polyunsaturated lipid bilayers by joint refinement of neutron and X-ray scattering dataChemistry and Physics of Lipids229, 10.1016/j.chemphyslip.2020.104892
2020Maszota-Zieleniak, M., P. Jurczak, M. Orlikowska, I. Zhukov, D. Borek, Z. Otwinowski, P. Skowron, Z. Pietralik, M. Kozak, A. Szymańska and S. Rodziewicz-Motowidło. NMR and crystallographic structural studies of the extremely stable monomeric variant of human cystatin C with single amino acid substitution. FEBS Journal 287(2), 361-376.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Maszota-Zieleniak, M., P. Jurczak, M. Orlikowska, I. Zhukov, D. Borek, Z. Otwinowski, P. Skowron, Z. Pietralik, M. Kozak, A. Szymańska and S. Rodziewicz-MotowidłoNMR and crystallographic structural studies of the extremely stable monomeric variant of human cystatin C with single amino acid substitutionFEBS Journal287(2), 361-37610.1111/febs.15010
2020Mathieu, E., A. E. Tolbert, K. J. Koebke, C. Tard, O. Iranzo, J. E. Penner-Hahn, C. Policar and V. Pecoraro. Rational De Novo Design of a Cu Metalloenzyme for Superoxide Dismutation. Chemistry - A European Journal 26(1), 249-258.Stanford Synchrotron Radiation LightsourceMathieu, E., A. E. Tolbert, K. J. Koebke, C. Tard, O. Iranzo, J. E. Penner-Hahn, C. Policar and V. PecoraroRational De Novo Design of a Cu Metalloenzyme for Superoxide DismutationChemistry - A European Journal26(1), 249-25810.1002/chem.201903808
2020Matzen, S., S. Fakra, P. Nico and C. Pallud. Pteris vittata arsenic accumulation only partially explains soil arsenic depletion during field‐scale phytoextraction. Soil Systems 4(4), 44217.Stanford Synchrotron Radiation LightsourceMatzen, S., S. Fakra, P. Nico and C. PalludPteris vittata arsenic accumulation only partially explains soil arsenic depletion during field‐scale phytoextractionSoil Systems4(4), 4421710.3390/soilsystems4040071
2020Mazurkewich, S., R. Helland, A. Mackenzie, V. G. H. Eijsink, P. B. Pope, G. Brändén and J. Larsbrink. Structural insights of the enzymes from the chitin utilization locus of Flavobacterium johnsoniae. Scientific Reports 10(1).Stanford Synchrotron Radiation LightsourceMazurkewich, S., R. Helland, A. Mackenzie, V. G. H. Eijsink, P. B. Pope, G. Brändén and J. LarsbrinkStructural insights of the enzymes from the chitin utilization locus of Flavobacterium johnsoniaeScientific Reports10(1), 10.1038/s41598-020-70749-w
2020McClelland, L. J., Zhang, K., Mou, T.-C., Johnston, J., Yates-Hansen, C., Li, S., Thomas, C. J., Doukov, T. I., Triest, S., Wohlkonig, A., Tall, G. G., Steyaert, J., Chiu, W., Sprang, S. R. "Structure of the G protein chaperone and guanine nucleotide exchange factor Ric-8A bound to Gαi1." Nature Communications 11, 1077 (2020).APS, NSLSII, SSRLCenter for BioMolecular Structure, Stanford-SLAC Cryo-EM Center, Structural Biology Center, Structural Molecular Biology ResourceCryo-EM, Solution X-ray Scattering (SAXS), X-ray Macromolecular Crystallography (MX)McClelland, L. J., Zhang, K., Mou, T.-C., Johnston, J., Yates-Hansen, C., Li, S., Thomas, C. J., Doukov, T. I., Triest, S., Wohlkonig, A., Tall, G. G., Steyaert, J., Chiu, W., Sprang, S. R.Structure of the G protein chaperone and guanine nucleotide exchange factor Ric-8A bound to Gαi1Nature Communications11, 107710.1038/s41467-020-14943-4(feature story) (related highlight)
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2020O'Flynn, B. G., E. M. Lewandowski, K. C. Prins, G. Suarez, A. N. McCaskey, N. M. Rios-Guzman, R. L. Anderson, B. A. Shepherd, I. Gelis, J. W. Leahy, Y. Chen and D. J. Merkler. Characterization of arylalkylamine n-acyltransferase from tribolium castaneum: an investigation into a potential next-generation insecticide target. ACS Chemical Biology 15(2), 513-523.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)O'Flynn, B. G., E. M. Lewandowski, K. C. Prins, G. Suarez, A. N. McCaskey, N. M. Rios-Guzman, R. L. Anderson, B. A. Shepherd, I. Gelis, J. W. Leahy, Y. Chen and D. J. MerklerCharacterization of arylalkylamine n-acyltransferase from tribolium castaneum: an investigation into a potential next-generation insecticide targetACS Chemical Biology15(2), 513-52310.1021/acschembio.9b00973
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2020Pinals, R. L., D. Yang, D. J. Rosenberg, T. Chaudhary, A. R. Crothers, A. T. Iavarone, M. Hammel and M. P. Landry. Quantitative Protein Corona Composition and Dynamics on Carbon Nanotubes in Biological Environments. Angewandte Chemie - International Edition 59(52), 23668-23677.ALSStructurally Integrated Biology for the Life Sciences Solution X-ray Scattering (SAXS)Pinals, R. L., D. Yang, D. J. Rosenberg, T. Chaudhary, A. R. Crothers, A. T. Iavarone, M. Hammel and M. P. LandryQuantitative Protein Corona Composition and Dynamics on Carbon Nanotubes in Biological EnvironmentsAngewandte Chemie - International Edition59(52), 23668-2367710.1002/anie.202008175
2020Pingali, S. V., M. D. Smith, S. H. Liu, T. B. Rawal, Y. Pu, R. Shah, B. R. Evans, V. S. Urban, B. H. Davison, C. M. Cai, A. J. Ragauskas, H. M. O'Neill, J. C. Smith and L. Petridis. "Deconstruction of biomass enabled by local demixing of cosolvents at cellulose and lignin surfaces," Proceedings of the National Academy of Sciences of the United States of America 117(29), 16776-16781.SNS-HFIRCenter for Structural Molecular Biology Small-Angle Neutron Scattering (SANS)Pingali, S. V., M. D. Smith, S. H. Liu, T. B. Rawal, Y. Pu, R. Shah, B. R. Evans, V. S. Urban, B. H. Davison, C. M. Cai, A. J. Ragauskas, H. M. O'Neill, J. C. Smith and L. PetridisDeconstruction of biomass enabled by local demixing of cosolvents at cellulose and lignin surfacesProceedings of the National Academy of Sciences of the United States of America117(29), 16776-1678110.1073/pnas.1922883117(related highlight)
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2020Polo, C. C., M. H. Fonseca-Alaniz, J. H. Chen, A. Ekman, G. McDermott, F. Meneau, J. E. Krieger and A. A. Miyakawa. Three-dimensional imaging of mitochondrial cristae complexity using cryo-soft X-ray tomography. Scientific Reports 10(1).Advanced Light SourceNational Center for X-Ray Tomography Soft X-ray TomographyPolo, C. C., M. H. Fonseca-Alaniz, J. H. Chen, A. Ekman, G. McDermott, F. Meneau, J. E. Krieger and A. A. MiyakawaThree-dimensional imaging of mitochondrial cristae complexity using cryo-soft X-ray tomographyScientific Reports10(1), 10.1038/s41598-020-78150-3
2020Prahlad, J., Y. Yuan, J. Lin, C. W. Chang, D. Iwata-Reuyl, Y. Liu, V. de Crécy-Lagard and M. A. Wilson. The DUF328 family member YaaA is a DNA-binding protein with a novel fold. Journal of Biological Chemistry 295(41), 14236-14247.Stanford Synchrotron Radiation LightsourcePrahlad, J., Y. Yuan, J. Lin, C. W. Chang, D. Iwata-Reuyl, Y. Liu, V. de Crécy-Lagard and M. A. WilsonThe DUF328 family member YaaA is a DNA-binding protein with a novel foldJournal of Biological Chemistry295(41), 14236-1424710.1074/jbc.RA120.015055
2020Pritts, J. D., M. S. Hursey, J. L. Michalek, S. Batelu, T. L. Stemmler and S. L. J. Michel. Unraveling the RNA Binding Properties of the Iron-Sulfur Zinc Finger Protein CPSF30. Biochemistry 59(8), 970-982.Stanford Synchrotron Radiation LightsourcePritts, J. D., M. S. Hursey, J. L. Michalek, S. Batelu, T. L. Stemmler and S. L. J. MichelUnraveling the RNA Binding Properties of the Iron-Sulfur Zinc Finger Protein CPSF30Biochemistry59(8), 970-98210.1021/acs.biochem.9b01065
2020Probst, A. J., F. J. Elling, C. J. Castelle, Q. Zhu, M. Elvert, G. Birarda, H. Y. N. Holman, K. R. Lane, B. Ladd, M. C. Ryan, T. Woyke, K. U. Hinrichs and J. F. Banfield. Lipid analysis of CO2-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria. ISME Journal 14(6), 1547-1560.Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramSynchrotron Infrared Hyperspectral ImagingProbst, A. J., F. J. Elling, C. J. Castelle, Q. Zhu, M. Elvert, G. Birarda, H. Y. N. Holman, K. R. Lane, B. Ladd, M. C. Ryan, T. Woyke, K. U. Hinrichs and J. F. BanfieldLipid analysis of CO2-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteriaISME Journal14(6), 1547-156010.1038/s41396-020-0624-4
2020Qian, S., V. K. Sharma and L. A. Clifton. Understanding the Structure and Dynamics of Complex Biomembrane Interactions by Neutron Scattering Techniques. Langmuir 36(50), 15189-15211.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologyCenter for Structural Molecular BiologyQian, S., V. K. Sharma and L. A. CliftonUnderstanding the Structure and Dynamics of Complex Biomembrane Interactions by Neutron Scattering TechniquesLangmuir36(50), 15189-1521110.1021/acs.langmuir.0c02516
2020Rathnayaka, Suresh C., Shahidul M. Islam, Ida M. DiMucci, Samantha N. MacMillan, Kyle M. Lancaster and Neal P. Mankad. Probing the electronic and mechanistic roles of the μ4-sulfur atom in a synthetic CuZ model system. Chemical Science 11(13), 3441-3447.Stanford Synchrotron Radiation LightsourceRathnayaka, Suresh C., Shahidul M. Islam, Ida M. DiMucci, Samantha N. MacMillan, Kyle M. Lancaster and Neal P. MankadProbing the electronic and mechanistic roles of the μ4-sulfur atom in a synthetic CuZ model systemChemical Science11(13), 3441-344710.1039/c9sc06251c
2020Remesh, S. G., S. C. Verma, J. H. Chen, A. A. Ekman, C. A. Larabell, S. Adhya and M. Hammel. Nucleoid remodeling during environmental adaptation is regulated by HU-dependent DNA bundling. Nature Communications 11(1).ALSStructurally Integrated Biology for the Life Sciences Solution X-ray Scattering (SAXS), X-ray Macromolecular Crystallography (MC), Soft X-ray Tomography (SXT)Remesh, S. G., S. C. Verma, J. H. Chen, A. A. Ekman, C. A. Larabell, S. Adhya and M. HammelNucleoid remodeling during environmental adaptation is regulated by HU-dependent DNA bundlingNature Communications11(1), 10.1038/s41467-020-16724-5(related highlight)
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2020Rice, D. B., E. N. Grotemeyer, A. M. Donovan and T. A. Jackson. Effect of Lewis Acids on the Structure and Reactivity of a Mononuclear Hydroxomanganese(III), Complex. Inorganic Chemistry 59(5), 2689-2700.Stanford Synchrotron Radiation LightsourceRice, D. B., E. N. Grotemeyer, A. M. Donovan and T. A. JacksonEffect of Lewis Acids on the Structure and Reactivity of a Mononuclear Hydroxomanganese(III), ComplexInorganic Chemistry59(5), 2689-270010.1021/acs.inorgchem.9b02980
2020Rodríguez-Maciá, P., L. M. Galle, R. Bjornsson, C. Lorent, I. Zebger, Y. Yoda, S. P. Cramer, S. DeBeer, I. Span and J. A. Birrell. Caught in the Hinact: Crystal Structure and Spectroscopy Reveal a Sulfur Bound to the Active Site of an O2-stable State of [FeFe] Hydrogenase. Angewandte Chemie - International Edition 59(38), 16786-16794.Stanford Synchrotron Radiation LightsourceRodríguez-Maciá, P., L. M. Galle, R. Bjornsson, C. Lorent, I. Zebger, Y. Yoda, S. P. Cramer, S. DeBeer, I. Span and J. A. BirrellCaught in the Hinact: Crystal Structure and Spectroscopy Reveal a Sulfur Bound to the Active Site of an O2-stable State of [FeFe] HydrogenaseAngewandte Chemie - International Edition59(38), 16786-1679410.1002/anie.202005208
2020Romei, M. G., C. Y. Lin and S. G. Boxer. Structural and spectroscopic characterization of photoactive yellow protein and photoswitchable fluorescent protein constructs containing heavy atoms. Journal of Photochemistry and Photobiology A: Chemistry 401.Stanford Synchrotron Radiation LightsourceRomei, M. G., C. Y. Lin and S. G. BoxerStructural and spectroscopic characterization of photoactive yellow protein and photoswitchable fluorescent protein constructs containing heavy atomsJournal of Photochemistry and Photobiology A: Chemistry40110.1016/j.jphotochem.2020.112738
2020Romei, M. G., C. Y. Lin, I. I. Mathews and S. G. Boxer. Electrostatic control of photoisomerization pathways in proteins. Science 367(6473), 76-79.Stanford Synchrotron Radiation LightsourceRomei, M. G., C. Y. Lin, I. I. Mathews and S. G. BoxerElectrostatic control of photoisomerization pathways in proteinsScience367(6473), 76-7910.1126/science.aax1898
2020Ronnebaum, T. A., K. Gupta and D. W. Christianson. Higher-order oligomerization of a chimeric αβγ bifunctional diterpene synthase with prenyltransferase and class II cyclase activities is concentration-dependent. Journal of Structural Biology 210(1).National Synchrotron Light Source IICenter for BioMolecular StructureSmall-Angle X-ray Scattering (SAXS)Ronnebaum, T. A., K. Gupta and D. W. ChristiansonHigher-order oligomerization of a chimeric αβγ bifunctional diterpene synthase with prenyltransferase and class II cyclase activities is concentration-dependentJournal of Structural Biology210(1), 10.1016/j.jsb.2020.107463
2020Rosén, T., H. He, R. Wang, C. Zhan, S. Chodankar, A. Fall, C. Aulin, P. T. Larsson, T. Lindström and B. S. Hsiao. Cross-Sections of Nanocellulose from Wood Analyzed by Quantized Polydispersity of Elementary Microfibrils. ACS Nano 14(12), 16743-16754.National Synchrotron Light Source IICenter for BioMolecular StructureSmall-Angle X-ray Scattering (SAXS)Rosén, T., H. He, R. Wang, C. Zhan, S. Chodankar, A. Fall, C. Aulin, P. T. Larsson, T. Lindström and B. S. HsiaoCross-Sections of Nanocellulose from Wood Analyzed by Quantized Polydispersity of Elementary MicrofibrilsACS Nano14(12), 16743-1675410.1021/acsnano.0c04570
2020Santos, C. R., P. A. C. R. Costa, P. S. Vieira, S. E. T. Gonzalez, T. L. R. Correa, E. A. Lima, F. Mandelli, R. A. S. Pirolla, M. N. Domingues, L. Cabral, M. P. Martins, R. L. Cordeiro, A. T. Junior, B. P. Souza, É T. Prates, F. C. Gozzo, G. F. Persinoti, M. S. Skaf and M. T. Murakami. Structural insights into β-1,3-glucan cleavage by a glycoside hydrolase family. Nature Chemical Biology 16(8), 920-929.Stanford Synchrotron Radiation LightsourceSantos, C. R., P. A. C. R. Costa, P. S. Vieira, S. E. T. Gonzalez, T. L. R. Correa, E. A. Lima, F. Mandelli, R. A. S. Pirolla, M. N. Domingues, L. Cabral, M. P. Martins, R. L. Cordeiro, A. T. Junior, B. P. Souza, É T. Prates, F. C. Gozzo, G. F. Persinoti, M. S. Skaf and M. T. MurakamiStructural insights into β-1,3-glucan cleavage by a glycoside hydrolase familyNature Chemical Biology16(8), 920-92910.1038/s41589-020-0554-5
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2020Schaefer, M. V., N. A. Bogie, D. Rath, A. R. Marklein, A. Garniwan, T. Haensel, Y. Lin, C. C. Avila, P. S. Nico, K. M. Scow, E. L. Brodie, W. J. Riley, M. L. Fogel, A. A. Berhe, T. A. Ghezzehei, S. Parikh, M. Keiluweit and S. C. Ying. Effect of cover crop on carbon distribution in size and density separated soil aggregates. Soil Systems 4(1), 44214.Stanford Synchrotron Radiation LightsourceSchaefer, M. V., N. A. Bogie, D. Rath, A. R. Marklein, A. Garniwan, T. Haensel, Y. Lin, C. C. Avila, P. S. Nico, K. M. Scow, E. L. Brodie, W. J. Riley, M. L. Fogel, A. A. Berhe, T. A. Ghezzehei, S. Parikh, M. Keiluweit and S. C. YingEffect of cover crop on carbon distribution in size and density separated soil aggregatesSoil Systems4(1), 4421410.3390/soilsystems4010006
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2020Zettl, T., X. Shi, S. Bonilla, S. M. Sedlak, J. Lipfert and D. Herschlag. The structural ensemble of a Holliday junction determined by X-ray scattering interference. Nucleic Acids Research 48(14), 8090-8098.DOI: 10.1093/nar/gkaa509Stanford Synchrotron Radiation LightsourceZettl, T., X. Shi, S. Bonilla, S. M. Sedlak, J. Lipfert and D. HerschlagThe structural ensemble of a Holliday junction determined by X-ray scattering interferenceNucleic Acids Research48(14), 8090-809810.1093/nar/gkaa509
2020Zhang, K., J. S. Lee, R. Liu, Z. T. Chan, T. J. Dawson, E. S. de Togni, C. T. Edwards, I. K. Eng, A. R. Gao, L. A. Goicouria, E. M. Hall, K. A. Hu, K. Huang, A. Kizhner, K. C. Kodama, A. Z. Lin, J. Y. Liu, A. Y. Lu, O. W. Peng, E. P. Ryu, S. Shi, M. L. Sorkin, P. L. Walker, G. J. Wang, M. C. Xu, R. S. Yang, B. Cascella, W. Cruz, C. K. Holland, S. A. McClerkin, B. N. Kunkel, S. G. Lee and J. M. Jez. Investigating the reaction and substrate preference of indole-3-acetaldehyde dehydrogenase from the plant pathogen Pseudomonas syringae PtoDC3000. Bioscience Reports 40(12).Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Zhang, K., J. S. Lee, R. Liu, Z. T. Chan, T. J. Dawson, E. S. de Togni, C. T. Edwards, I. K. Eng, A. R. Gao, L. A. Goicouria, E. M. Hall, K. A. Hu, K. Huang, A. Kizhner, K. C. Kodama, A. Z. Lin, J. Y. Liu, A. Y. Lu, O. W. Peng, E. P. Ryu, S. Shi, M. L. Sorkin, P. L. Walker, G. J. Wang, M. C. Xu, R. S. Yang, B. Cascella, W. Cruz, C. K. Holland, S. A. McClerkin, B. N. Kunkel, S. G. Lee and J. M. JezInvestigating the reaction and substrate preference of indole-3-acetaldehyde dehydrogenase from the plant pathogen Pseudomonas syringae PtoDC3000Bioscience Reports40(12), 10.1042/BSR20202959
2020Zheng, W., M. Anzaldua, A. Arora, Y. Jiang, K. McIntyre, M. Doerfert, T. Winter, A. Mishra, H. Ma and H. Liang. 2020. "Environmentally Benign Nanoantibiotics with a Built-in Deactivation Switch Responsive to Natural Habitats," Biomacromolecules 21(6), 2187–98.Stanford Synchrotron Radiation LightsourceStructural Molecular Biology ResourceSolution X-ray Scattering, Synchrotron Infrared Hyperspectral ImagingZheng, W., M. Anzaldua, A. Arora, Y. Jiang, K. McIntyre, M. Doerfert, T. Winter, A. Mishra, H. Ma and H. LiangEnvironmentally Benign Nanoantibiotics with a Built-in Deactivation Switch Responsive to Natural HabitatsBiomacromolecules21(6), 2187-219810.1021/acs.biomac.0c00163(related highlight)
2020Zhou, Z., E. M. Muehe, E. J. Tomaszewski, J. Lezama-Pacheco, A. Kappler and J. M. Byrne. Effect of Natural Organic Matter on the Fate of Cadmium during Microbial Ferrihydrite Reduction. Environmental Science & Technology 54(15), 9445-9453.Stanford Synchrotron Radiation LightsourceZhou, Z., E. M. Muehe, E. J. Tomaszewski, J. Lezama-Pacheco, A. Kappler and J. M. ByrneEffect of Natural Organic Matter on the Fate of Cadmium during Microbial Ferrihydrite ReductionEnvironmental Science & Technology54(15), 9445-945310.1021/acs.est.0c03062
2020Zhu, P., X.-H. Yu, C. Wang, Q. Zhang, W. Liu, S. McSweeney, J. Shanklin, E. Lam, Q. Liu, Structural basis for Ca2+-dependent activation of a plant metacaspase. Nature Communications 11 (1), 2249 (2020).NSLSIICenter for BioMolecular Structure X-ray Macromolecular Crystallography (MX)Zhu, P., X.-H. Yu, C. Wang, Q. Zhang, W. Liu, S. McSweeney, J. Shanklin, E. Lam, Q. LiuStructural basis for Ca2+-dependent activation of a plant metacaspase.Nature Communications11 (1), 224910.1038/s41467-020-15830-8(feature story) (related highlight)
2020Zhu, Y., N. Plaza, Y. Kojima, M. Yoshida, J. Zhang, J. Jellison, S. V. Pingali, H. O’Neill and B. Goodell. Nanostructural Analysis of Enzymatic and Non-enzymatic Brown Rot Fungal Deconstruction of the Lignocellulose Cell Wall. Frontiers in Microbiology 11.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Zhu, Y., N. Plaza, Y. Kojima, M. Yoshida, J. Zhang, J. Jellison, S. V. Pingali, H. O’Neill and B. GoodellNanostructural Analysis of Enzymatic and Non-enzymatic Brown Rot Fungal Deconstruction of the Lignocellulose Cell Wall†Frontiers in Microbiology1110.3389/fmicb.2020.01389
2020Zsombor-Pindera, J., F. Effaty, L. Escomel, B. Patrick, P. Kennepohl and X. Ottenwaelder. Five nitrogen oxidation states from nitro to amine: Stabilization and reactivity of a metastable arylhydroxylamine complex. Journal of the American Chemical Society 142(45), 19023-19028.Stanford Synchrotron Radiation LightsourceZsombor-Pindera, J., F. Effaty, L. Escomel, B. Patrick, P. Kennepohl and X. OttenwaelderFive nitrogen oxidation states from nitro to amine: Stabilization and reactivity of a metastable arylhydroxylamine complexJournal of the American Chemical Society142(45), 19023-1902810.1021/jacs.0c09300
2019Acheson, J. F., Z. S. Derewenda and J. Zimmer. Architecture of the cellulose synthase outer membrane channel and its association with the periplasmic TPR domain. Structure 27(12), 1855-1861.e3.National Synchrotron Light Source IICenter for BioMolecular StructureX-ray Macromolecular Crystallography (MX)Acheson, J. F., Z. S. Derewenda and J. ZimmerArchitecture of the cellulose synthase outer membrane channel and its association with the periplasmic TPR domainStructure27(12), 1855-1861.e310.1016/j.str.2019.09.008
2019Ade-Browne, C., A. Dawn, M. Mirzamani, S. Qian and H. Kumari. Differential behavior of sodium laurylsulfate micelles in the presence of nonionic polymers. Journal of Colloid and Interface Science 544(), 276-283.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Ade-Browne, C., A. Dawn, M. Mirzamani, S. Qian and H. KumariDifferential behavior of sodium laurylsulfate micelles in the presence of nonionic polymersJournal of Colloid and Interface Science544(), 276-28310.1016/j.jcis.2019.02.081
2019Adusei-Dans, F., F. T. Khaja, M. DeSantis, P. D. Jeffrey, E. Dubnau, B. Demeler, M. B. Neiditch and D. Dubnau. Structure-function studies of the Bacillus subtilis RIC proteins identify the Fe-S cluster-ligating residues and their roles in development and RNA processing. mBio 10(5).Stanford Synchrotron Radiation LightsourceAdusei-Dans, F., F. T. Khaja, M. DeSantis, P. D. Jeffrey, E. Dubnau, B. Demeler, M. B. Neiditch and D. DubnauStructure-function studies of the Bacillus subtilis RIC proteins identify the Fe-S cluster-ligating residues and their roles in development and RNA processingmBio10(5), 10.1128/mBio.01841-19
2019Alwan, K. B., E. F. Welch and N. J. Blackburn. Catalytic M Center of Copper Monooxygenases Probed by Rational Design. Effects of Selenomethionine and Histidine Substitution on Structure and Reactivity. Biochemistry 58(44) 4436–4446.Stanford Synchrotron Radiation LightsourceAlwan, K. B., E. F. Welch and N. J. BlackburnCatalytic M Center of Copper Monooxygenases Probed by Rational Design. Effects of Selenomethionine and Histidine Substitution on Structure and ReactivityBiochemistry10.1021/acs.biochem.9b00823
2019Alwan, K. B., E. F. Welch, R. J. Arias, B. F. Gambill and N. J. Blackburn. Rational Design of a Histidine-Methionine Site Modeling the M-Center of Copper Monooxygenases in a Small Metallochaperone Scaffold. Biochemistry 58(28), 3097-3108.Stanford Synchrotron Radiation LightsourceAlwan, K. B., E. F. Welch, R. J. Arias, B. F. Gambill and N. J. BlackburnRational Design of a Histidine-Methionine Site Modeling the M-Center of Copper Monooxygenases in a Small Metallochaperone ScaffoldBiochemistry58(28), 3097-310810.1021/acs.biochem.9b00312
2019Andi, B., A. S. Soares, W. Shi, M. R. Fuchs, S. McSweeney and Q. Liu. Structure of the dihydrolipoamide succinyltransferase catalytic domain from Escherichia coli in a novel crystal form: A tale of a common protein crystallization contaminant. Acta Crystallographica Section F: Structural Biology Communications 75, 616-624.National Synchrotron Light Source IICenter for BioMolecular StructureX-ray Macromolecular Crystallography (MX)Andi, B., A. S. Soares, W. Shi, M. R. Fuchs, S. McSweeney and Q. LiuStructure of the dihydrolipoamide succinyltransferase catalytic domain from Escherichia coli in a novel crystal form: A tale of a common protein crystallization contaminantActa Crystallographica Section F: Structural Biology Communications75(), 616-62410.1107/S2053230X19011488
2019Arnal, G., P. J. Stogios, J. Asohan, M. A. Attia, T. Skarina, A. H. Viborg, B. Henrissat, A. Savchenko and H. Brumer. Substrate specificity, regiospecificity, and processivity in glycoside hydrolase family 74. Journal of Biological Chemistry 294(36), 13233-13247.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Arnal, G., P. J. Stogios, J. Asohan, M. A. Attia, T. Skarina, A. H. Viborg, B. Henrissat, A. Savchenko and H. BrumerSubstrate specificity, regiospecificity, and processivity in glycoside hydrolase family 74Journal of Biological Chemistry294(36), 13233-1324710.1074/jbc.RA119.009861
2019Asta, M. P., Y. Wang, M. Frutschi, K. Viacava, L. Loreggian, P. Le Pape, P. Le Vo, A. M. Fernández, G. Morin and R. Bernier-Latmani. Microbially Mediated Release of As from Mekong Delta Peat Sediments. Environmental Science & Technology 53(17), 10208-10217.Stanford Synchrotron Radiation LightsourceAsta, M. P., Y. Wang, M. Frutschi, K. Viacava, L. Loreggian, P. Le Pape, P. Le Vo, A. M. Fernández, G. Morin and R. Bernier-LatmaniMicrobially Mediated Release of As from Mekong Delta Peat SedimentsEnvironmental Science & Technology53(17), 10208-1021710.1021/acs.est.9b02887
2019Avellan, A., J. Yun, Y. Zhang, E. Spielman-Sun, J. M. Unrine, J. Thieme, J. Li, E. Lombi, G. Bland and G. V. Lowry. Nanoparticle Size and Coating Chemistry Control Foliar Uptake Pathways, Translocation, and Leaf-to-Rhizosphere Transport in Wheat. ACS Nano 13(5), 5291-5305.Stanford Synchrotron Radiation LightsourceAvellan, A., J. Yun, Y. Zhang, E. Spielman-Sun, J. M. Unrine, J. Thieme, J. Li, E. Lombi, G. Bland and G. V. LowryNanoparticle Size and Coating Chemistry Control Foliar Uptake Pathways, Translocation, and Leaf-to-Rhizosphere Transport in WheatACS Nano13(5), 5291-530510.1021/acsnano.8b09781
2019Aziz, M., X. Wang, A. Tripathi, V. A. Bankaitis and K. D. Chapman. Structural analysis of a plant fatty acid amide hydrolase provides insights into the evolutionary diversity of bioactive acylethanolamides. Journal of Biological Chemistry 294(18), 7419-7432.Stanford Synchrotron Radiation LightsourceAziz, M., X. Wang, A. Tripathi, V. A. Bankaitis and K. D. ChapmanStructural analysis of a plant fatty acid amide hydrolase provides insights into the evolutionary diversity of bioactive acylethanolamidesJournal of Biological Chemistry294(18), 7419-743210.1074/jbc.RA118.006672
2019Bakir, G., B. E. Girouard, R. W. Johns, C. R. J. Findlay, H. A. Bechtel, M. Eisele, S. G. W. Kaminskyj, T. E. S. Dahms and K. M. Gough. Ultrastructural and SINS analysis of the cell wall integrity response of: Aspergillus nidulans to the absence of galactofuranose. Analyst 144(3), 928-934.Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramSynchrotron Infrared Hyperspectral ImagingBakir, G., B. E. Girouard, R. W. Johns, C. R. J. Findlay, H. A. Bechtel, M. Eisele, S. G. W. Kaminskyj, T. E. S. Dahms and K. M. GoughUltrastructural and SINS analysis of the cell wall integrity response of: Aspergillus nidulans to the absence of galactofuranoseAnalyst144(3), 928-93410.1039/c8an01591k
2019Bamford, N. C., F. Le Mauff, A. S. Subramanian, P. Yip, C. Millán, Y. Zhang, C. Zacharias, A. Forman, X. Mark Nitz, J. D. C. Codée, I. Usón, D. C. Sheppard and P. Lynne Howell. Ega3 from the fungal pathogen Aspergillus fumigatus is an endo-α-1,4-galactosaminidase that disrupts microbial biofilms. Journal of Biological Chemistry 294(37), 13833-13849.National Synchrotron Light Source IICenter for BioMolecular StructureX-ray Macromolecular Crystallography (MX)Bamford, N. C., F. Le Mauff, A. S. Subramanian, P. Yip, C. Millán, Y. Zhang, C. Zacharias, A. Forman, X. Mark Nitz, J. D. C. Codée, I. Usón, D. C. Sheppard and P. Lynne HowellEga3 from the fungal pathogen Aspergillus fumigatus is an endo-α-1,4-galactosaminidase that disrupts microbial biofilmsJournal of Biological Chemistry294(37), 13833-1384910.1074/jbc.RA119.009910
2019Bartholomew, A. K., J. J. Teesdale, R. H. Sánchez, B. J. Malbrecht, C. E. Juda, G. Ménard, W. Bu, D. A. Iovan, A. A. Mikhailine, S. L. Zheng, R. Sarangi, S. G. Wang, Y. S. Chen and T. A. Betley. Exposing the inadequacy of redox formalisms by resolving redox inequivalence within isovalent clusters. Proceedings of the National Academy of Sciences of the United States of America 116(32), 15836-15841.Stanford Synchrotron Radiation LightsourceBartholomew, A. K., J. J. Teesdale, R. H. Sánchez, B. J. Malbrecht, C. E. Juda, G. Ménard, W. Bu, D. A. Iovan, A. A. Mikhailine, S. L. Zheng, R. Sarangi, S. G. Wang, Y. S. Chen and T. A. BetleyExposing the inadequacy of redox formalisms by resolving redox inequivalence within isovalent clustersProceedings of the National Academy of Sciences of the United States of America116(32), 15836-1584110.1073/pnas.1907699116
2019Besold, J., N. Kumar, A. C. Scheinost, J. Lezama Pacheco, S. Fendorf and B. Planer-Friedrich. Antimonite Complexation with Thiol and Carboxyl/Phenol Groups of Peat Organic Matter. Environmental Science & Technology 53(9), 5005-5015.Stanford Synchrotron Radiation LightsourceBesold, J., N. Kumar, A. C. Scheinost, J. Lezama Pacheco, S. Fendorf and B. Planer-FriedrichAntimonite Complexation with Thiol and Carboxyl/Phenol Groups of Peat Organic MatterEnvironmental Science & Technology53(9), 5005-501510.1021/acs.est.9b00495
2019Biegasiewicz, K.F., S. J. Cooper, X. Gao, D. G. Oblinsky, J. H. Kim, S. E. Garfinkle, L. A. Joyce, B. A. Sandoval1, G. D. Scholes, T. K. Hyster. “Photoexcitation of flavoenzymes enables a stereoselective radical cyclization.” Science 364, 1166–1169 (2019).NSLSIICenter for BioMolecular Structure X-ray Macromolecular Crystallography (MX)Biegasiewicz, K.F., S. J. Cooper, X. Gao, D. G. Oblinsky, J. H. Kim, S. E. Garfinkle, L. A. Joyce, B. A. Sandoval1, G. D. Scholes, T. K. Hyster.Photoexcitation of flavoenzymes enables a stereoselective radical cyclizationScience 364, 1166–116910.1126/science.aaw1143(feature story) (related highlight)
2019Blank, P. N., S. A. Shinsky and D. W. Christianson. Structure of Sesquisabinene Synthase 1, a Terpenoid Cyclase That Generates a Strained [3.1.0] Bridged-Bicyclic Product. ACS Chemical Biology 14(5), 1011-1019.Stanford Synchrotron Radiation LightsourceBlank, P. N., S. A. Shinsky and D. W. ChristiansonStructure of Sesquisabinene Synthase 1, a Terpenoid Cyclase That Generates a Strained [3.1.0] Bridged-Bicyclic ProductACS Chemical Biology14(5), 1011-101910.1021/acschembio.9b00218
2019Boatman, E.M., M. B. Goodwin, H.-Y. N. Holman, S. Fakra, W. Zheng, R. Gronsky and M. H. Schweitzer. 2019. "Mechanisms of Soft Tissue and Protein Preservation in Tyrannosaurus rex," Scientific Reports  9, 15678.Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging Program Synchrotron Infrared Hyperspectral Imaging (SIHI)Boatman, E.M., M. B. Goodwin, H. N. Holman, et alMechanisms of soft tissue and protein preservation in Tyrannosaurus rexScientific Reports 9, 15678.10.1038/s41598-019-51680-1(related highlight) (feature story)
2019Boeynaems, S., A. S. Holehouse, V. Weinhardt, D. Kovacs, J. Van Lindt, C. Larabell, L. V. D. Bosch, R. Das, P. S. Tompa, R. V. Pappu and A. D. Gitler. Spontaneous driving forces give rise to protein−RNA condensates with coexisting phases and complex material properties. Proceedings of the National Academy of Sciences of the United States of America 116(16), 7889-7898.Advanced Light SourceNational Center for X-Ray Tomography Soft X-ray TomographyBoeynaems, S., A. S. Holehouse, V. Weinhardt, D. Kovacs, J. Van Lindt, C. Larabell, L. V. D. Bosch, R. Das, P. S. Tompa, R. V. Pappu and A. D. GitlerSpontaneous driving forces give rise to protein−RNA condensates with coexisting phases and complex material propertiesProceedings of the National Academy of Sciences of the United States of America116(16), 7889-789810.1073/pnas.1821038116
2019Bouet, N., A. T. Macrander, J. Maser, Y. S. Chu, J. Zhou, E. Nazaretski, H. Yan, X. Huang and R. Conley. Large Aperture and Wedged Multilayer Laue Lens for X-ray Nanofocusing. J Nanosci Nanotechnol 19(1), 575-584.National Synchrotron Light Source IIBouet, N., A. T. Macrander, J. Maser, Y. S. Chu, J. Zhou, E. Nazaretski, H. Yan, X. Huang and R. ConleyLarge Aperture and Wedged Multilayer Laue Lens for X-ray NanofocusingJ Nanosci Nanotechnol19(1), 575-58410.1166/jnn.2019.16479
2019Bouxsein, N. F., C. Leal, C. S. McAllister, Y. Li, K. K. Ewert, C. E. Samuel and C. R. Safinya. 3D Columnar Phase of Stacked Short DNA Organized by Coherent Membrane Undulations. Langmuir 35(36), 11891-11901.National Synchrotron Light Source II Stanford Synchrotron Radiation LightsourceBouxsein, N. F., C. Leal, C. S. McAllister, Y. Li, K. K. Ewert, C. E. Samuel and C. R. Safinya3D Columnar Phase of Stacked Short DNA Organized by Coherent Membrane UndulationsLangmuir35(36), 11891-1190110.1021/acs.langmuir.9b01726
2019Boyken, S. E., M. A. Benhaim, F. Busch, M. Jia, M. J. Bick, H. Choi, J. C. Klima, Z. Chen, C. Walkey, A. Mileant, A. Sahasrabuddhe, K. Y. Wei, E. A. Hodge, S. Byron, A. Quijano-Rubio, B. Sankaran, N. P. King, J. Lippincott-Schwartz, V. H. Wysocki, K. K. Lee and D. Baker. De novo design of tunable, pH-driven conformational changes. Science 364(6442), 658-664.Advanced Light SourceStructurally Integrated Biology for the Life SciencesBoyken, S. E., M. A. Benhaim, F. Busch, M. Jia, M. J. Bick, H. Choi, J. C. Klima, Z. Chen, C. Walkey, A. Mileant, A. Sahasrabuddhe, K. Y. Wei, E. A. Hodge, S. Byron, A. Quijano-Rubio, B. Sankaran, N. P. King, J. Lippincott-Schwartz, V. H. Wysocki, K. K. Lee and D. BakerDe novo design of tunable, pH-driven conformational changesScience364(6442), 658-66410.1126/science.aav7897
2019Boylan, A. A., C. Perez-Mon, L. Guillard, N. Burzan, L. Loreggian, M. Maisch, A. Kappler, J. M. Byrne and R. Bernier-Latmani. H 2 -fuelled microbial metabolism in Opalinus Clay. Applied Clay Science 174(), 69-76.National Synchrotron Light Source II Stanford Synchrotron Radiation LightsourceBoylan, A. A., C. Perez-Mon, L. Guillard, N. Burzan, L. Loreggian, M. Maisch, A. Kappler, J. M. Byrne and R. Bernier-LatmaniH 2 -fuelled microbial metabolism in Opalinus ClayApplied Clay Science174(), 69-7610.1016/j.clay.2019.03.020
2019Brady, N. G., S. Qian and B. D. Bruce. Analysis of styrene maleic acid alternating copolymer supramolecular assemblies in solution by small angle X-ray scattering. European Polymer Journal 111, 178-184.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologyBrady, N. G., S. Qian and B. D. BruceAnalysis of styrene maleic acid alternating copolymer supramolecular assemblies in solution by small angle X-ray scatteringEuropean Polymer Journal111(), 178-18410.1016/j.eurpolymj.2018.11.034
2019Branchini, B. R., D. M. Fontaine, T. L. Southworth, B. P. Huta, A. Racela, K. D. Patel and A. M. Gulick. Mutagenesis and structural studies reveal the basis for the activity and stability properties that distinguish the photinus luciferases scintillans and pyralis. Biochemistry 58(42), 4293-4303.Stanford Synchrotron Radiation LightsourceBranchini, B. R., D. M. Fontaine, T. L. Southworth, B. P. Huta, A. Racela, K. D. Patel and A. M. GulickMutagenesis and structural studies reveal the basis for the activity and stability properties that distinguish the photinus luciferases scintillans and pyralisBiochemistry58(42), 4293-430310.1021/acs.biochem.9b00719
2019Branscum, K. M., S. K. Menon, C. A. Foster and A. H. West. Insights revealed by the co-crystal structure of the Saccharomyces cerevisiae histidine phosphotransfer protein Ypd1 and the receiver domain of its downstream response regulator Ssk1. Protein Science 28(12), 2099-2111.Stanford Synchrotron Radiation LightsourceBranscum, K. M., S. K. Menon, C. A. Foster and A. H. WestInsights revealed by the co-crystal structure of the Saccharomyces cerevisiae histidine phosphotransfer protein Ypd1 and the receiver domain of its downstream response regulator Ssk1Protein Science28(12), 2099-211110.1002/pro.3755
2019Burda-Grabowska, M., K. Macegoniuk, R. Flick, B. P. Nocek, A. Joachimiak, A. F. Yakunin, A. Mucha and Ł Berlicki. Bisphosphonic acids and related compounds as inhibitors of nucleotide- and polyphosphate-processing enzymes: A PPK1 and PPK2 case study. Chemical Biology and Drug Design 93(6), 1197-1206.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Burda-Grabowska, M., K. Macegoniuk, R. Flick, B. P. Nocek, A. Joachimiak, A. F. Yakunin, A. Mucha and Ł BerlickiBisphosphonic acids and related compounds as inhibitors of nucleotide- and polyphosphate-processing enzymes: A PPK1 and PPK2 case studyChemical Biology and Drug Design93(6), 1197-120610.1111/cbdd.13439
2019Bush, M., B. M. Alhanshali, S. Qian, C. B. Stanley, W. T. Heller, T. Matsui, T. M. Weiss, I. D. Nicholl, T. Walz, D. J. E. Callaway and Z. Bu. An ensemble of flexible conformations underlies mechanotransduction by the cadherin–catenin adhesion complex. Proceedings of the National Academy of Sciences of the United States of America 116(43), 21545-21555.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Bush, M., B. M. Alhanshali, S. Qian, C. B. Stanley, W. T. Heller, T. Matsui, T. M. Weiss, I. D. Nicholl, T. Walz, D. J. E. Callaway and Z. BuAn ensemble of flexible conformations underlies mechanotransduction by the cadherin–catenin adhesion complexProceedings of the National Academy of Sciences of the United States of America116(43), 21545-2155510.1073/pnas.1911489116
2019Chang, C., C. Brooke, H. Piao, J. Mack, G. Babnigg, A. Joachimiak, and M. Hess. A 2.08 A resolution structure of HLB5, a novel cellulase from the anaerobic gut bacterium Parabacteroides johnsonii DSM 18315. Protein Sci 28(4)794-799.APSStructural Biology Center X-ray Macromolecular Crystallography (MX)Chang, C., C. Brooke, H. Piao, J. Mack, G. Babnigg, A. Joachimiak, and M. HessA 2.08 A resolution structure of HLB5, a novel cellulase from the anaerobic gut bacterium Parabacteroides johnsonii DSM 18315Protein Sci28(4)794-79910.1002/pro.3582
2019Chang, C., C. Wu, J. Osipiuk, S. D. Siegel, S. Zhu, X. Liu, A. Joachimiak, R. T. Clubb, A. Das and H. Ton-That. Cell-to-cell interaction requires optimal positioning of a pilus tip adhesin modulated by gram-positive transpeptidase enzymes. Proceedings of the National Academy of Sciences of the United States of America 116(36), 18041-18049.DOI: 10.1073/pnas.1907733116Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Chang, C., C. Wu, J. Osipiuk, S. D. Siegel, S. Zhu, X. Liu, A. Joachimiak, R. T. Clubb, A. Das and H. Ton-ThatCell-to-cell interaction requires optimal positioning of a pilus tip adhesin modulated by gram-positive transpeptidase enzymesProceedings of the National Academy of Sciences of the United States of America116(36), 18041-1804910.1073/pnas.1907733116
2019Chen, S., R. P. Wiewiora, F. Meng, N. Babault, A. Ma, W. Yu, K. Qian, H. Hu, H. Zou, J. Wang, S. Fan, G. Blum, F. P. Silva, K. A. Beauchamp, W. Tempel, H. Jiang, K. Chen, R. J. Skene, Y. G. Zheng, P. J. Brown, J. Jin, C. Luo, J. D. Chodera and M. Luo. The dynamic conformational landscape of the protein methyltransferase setd8. eLife 8.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Chen, S., R. P. Wiewiora, F. Meng, N. Babault, A. Ma, W. Yu, K. Qian, H. Hu, H. Zou, J. Wang, S. Fan, G. Blum, F. P. Silva, K. A. Beauchamp, W. Tempel, H. Jiang, K. Chen, R. J. Skene, Y. G. Zheng, P. J. Brown, J. Jin, C. Luo, J. D. Chodera and M. LuoThe dynamic conformational landscape of the protein methyltransferase setd8eLife8, 10.7554/eLife.45403
2019Chen, Z., S. E. Boyken, M. Jia, F. Busch, D. Flores-Solis, M. J. Bick, P. Lu, Z. L. VanAernum, A. Sahasrabuddhe, R. A. Langan, S. Bermeo, T. J. Brunette, V. K. Mulligan, L. P. Carter, F. DiMaio, N. G. Sgourakis, V. H. Wysocki and D. Baker. Programmable design of orthogonal protein heterodimers. Nature 565(7737), 106-111.Advanced Light SourceBerkeley Synchrotron Infrared Structural BiologySynchrotron Infrared Hyperspectral ImagingChen, Z., S. E. Boyken, M. Jia, F. Busch, D. Flores-Solis, M. J. Bick, P. Lu, Z. L. VanAernum, A. Sahasrabuddhe, R. A. Langan, S. Bermeo, T. J. Brunette, V. K. Mulligan, L. P. Carter, F. DiMaio, N. G. Sgourakis, V. H. Wysocki and D. BakerProgrammable design of orthogonal protein heterodimersNature565(7737), 106-11110.1038/s41586-018-0802-y
2019Choy, M.S., T. M. Moon, R. Ravindran, J. A. Bray, L. C. Robinson, T. L. Archuleta, W. Shi, W. Peti, K. Tatchell, R. Page. “SDS22 selectively recognizes and traps metal-deficient inactive PP1.” PNAS 116 (41) 20472-20481 (2019).NSLSII, SSRLX-ray Macromolecular Crystallography (MX)Choy, M.S., T.M. Moon, R. Ravindran, J. A. Bray, L. C. Robinson, T. L. Archuleta, W. Shi, W. Peti, K. Tatchell, R. Page.SDS22 selectively recognizes and traps metal-deficient inactive PP1PNAS 116 (41) 20472-2048110.1073/pnas.1908718116(feature story) (related highlight)
2019Chundawat, S. P. S., L. D. Sousa, S. Roy, Z. Yang, S. Gupta, R. Pal, C. Zhao, S.-H. Liu, L. Petridis, H. O'Neill, and S. V. Pingali. 2019. "Ammonia-salt solvent promotes cellulosic biomass deconstruction under ambient pretreatment conditions to enable rapid soluble sugar production at ultra-low enzyme loadings," Green Chemistry  22(1) 204—18.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular Biology Small-Angle Neutron Scattering (SANS)Chundawat, S. P. S., L. D. Sousa, S. Roy, Z. Yang, S. Gupta, R. Pal, C. Zhao, S.-H. Liu, L. Petridis, H. O'Neill, and S. V. PingaliAmmonia-salt solvent promotes cellulosic biomass deconstruction under ambient pretreatment conditions to enable rapid soluble sugar production at ultra-low enzyme loadingsGreen Chemistry22(1) 204—21810.1039/C9GC03524A(related highlight) (feature story)
2019Dantas, J. M., P. C. Portela, A. P. Fernandes, Y. Y. Londer, X. Yang, N. E. C. Duke, M. Schiffer, P. R. Pokkuluri and C. A. Salgueiro. Structural and Functional Relevance of the Conserved Residue V13 in the Triheme Cytochrome PpcA from Geobacter sulfurreducens. Journal of Physical Chemistry B 123(14), 3050-3060.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Dantas, J. M., P. C. Portela, A. P. Fernandes, Y. Y. Londer, X. Yang, N. E. C. Duke, M. Schiffer, P. R. Pokkuluri and C. A. SalgueiroStructural and Functional Relevance of the Conserved Residue V13 in the Triheme Cytochrome PpcA from Geobacter sulfurreducensJournal of Physical Chemistry B123(14), 3050-306010.1021/acs.jpcb.9b01214
2019Dasgupta, M., D. Budday, S. H. P. de Oliveira, P. Madzelan, D. Marchany-Rivera, J. Seravalli, B. Hayes, R. G. Sierra, S. Boutet, M. S. Hunter, R. Alonso-Mori, A. Batyuk, J. Wierman, A. Lyubimov, A. S. Brewster, N. K. Sauter, G. A. Applegate, V. K. Tiwari, D. B. Berkowitz, M. C. Thompson, A. E. Cohen, J. S. Fraser, M. E. Wall, H. van den Bedem and M. A. Wilson. Mix-and-inject XFEL crystallography reveals gated conformational dynamics during enzyme catalysis. Proceedings of the National Academy of Sciences of the United States of America 116(51), 25634-25640.Stanford Synchrotron Radiation LightsourceDasgupta, M., D. Budday, S. H. P. de Oliveira, P. Madzelan, D. Marchany-Rivera, J. Seravalli, B. Hayes, R. G. Sierra, S. Boutet, M. S. Hunter, R. Alonso-Mori, A. Batyuk, J. Wierman, A. Lyubimov, A. S. Brewster, N. K. Sauter, G. A. Applegate, V. K. Tiwari, D. B. Berkowitz, M. C. Thompson, A. E. Cohen, J. S. Fraser, M. E. Wall, H. van den Bedem and M. A. WilsonMix-and-inject XFEL crystallography reveals gated conformational dynamics during enzyme catalysisProceedings of the National Academy of Sciences of the United States of America116(51), 25634-2564010.1073/pnas.1901864116
2019de Klijn, T., A. M. M. Schreursa and L. M. J. Kroon-Batenburga, Rigid-body motion is the main source of diffuse scattering in protein crystallography. IUCrJ 6, 277-289.Stanford Synchrotron Radiation LightsourceT. de Klijn,a A. M. M. Schreursa and L. M. J. Kroon-Batenburga*Rigid-body motion is the main source of diffuse scattering in protein crystallographyIUCrJ6, 277-28910.1107/S2052252519000927
2019DeMirci, H., Y. Rao, G. M. Stoffel, B. Vögeli,, K. Schell, A. Batyuk, C. Gati, R. G. Sierra, M. S. Hunter, E. Han Dao, H. I. Ciftci, B. Hayes, F. Poitevin, K. Tono, D. A. Saez,  E. Vöhringer-Martinez, S. Deutsch, Y. Yoshikuni, T. J. Erb, and S. Wakatsuki. Coupled inter-subunit dynamics enable the fastest CO2-fixation by reductive carboxylases. bioRxiv preprint. SSRLStructural Molecular Biology Resource X-ray Macromolecular Crystallography (MX)DeMirci, H., Y. Rao, G. M. Stoffel, B. Vögeli, K. Schell, A. Batyuk, C. Gati, R. G. Sierra, M. S. Hunter, E. Han Dao, H. I. Ciftci, B. Hayes, F. Poitevin, K. Tono, D. A. Saez, E. Vöhringer-Martinez, S. Deutsch, Y. Yoshikuni, T. J. Erb, and S. WakatsukiCoupled inter-subunit dynamics enable the fastest CO2-fixation by reductive carboxylasesbioRxiv preprint10.1101/607101(related highlight)
2019Dergunov, S. A., A. G. Richter, M. D. Kim, S. V. Pingali, V. S. Urban and E. Pinkhassik. Deciphering and Controlling Structural and Functional Parameters of the Shells in Vesicle-Templated Polymer Nanocapsules. Langmuir 35(40), 13020-13030.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Dergunov, S. A., A. G. Richter, M. D. Kim, S. V. Pingali, V. S. Urban and E. PinkhassikDeciphering and Controlling Structural and Functional Parameters of the Shells in Vesicle-Templated Polymer NanocapsulesLangmuir35(40), 13020-1303010.1021/acs.langmuir.9b01495
2019Dominguez-Martin, M. A., T. Polívka, M. Sutter, B. Ferlez, S. Lechno-Yossef, B. L. Montgomery and C. A. Kerfeld. Structural and spectroscopic characterization of HCP2. Biochimica et Biophysica Acta - Bioenergetics 1860(5), 414-424.Stanford Synchrotron Radiation LightsourceDominguez-Martin, M. A., T. Polívka, M. Sutter, B. Ferlez, S. Lechno-Yossef, B. L. Montgomery and C. A. KerfeldStructural and spectroscopic characterization of HCP2Biochimica et Biophysica Acta - Bioenergetics1860(5), 414-42410.1016/j.bbabio.2019.03.004
2019Dong, L. B., Y. C. Liu, A. J. Cepeda, E. Kalkreuter, M. R. Deng, J. D. Rudolf, C. Chang, A. Joachimiak, G. N. Phillips and B. Shen. Characterization and Crystal Structure of a Nonheme Diiron Monooxygenase Involved in Platensimycin and Platencin Biosynthesis. Journal of the American Chemical Society 141(31), 12406-12412.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Dong, L. B., Y. C. Liu, A. J. Cepeda, E. Kalkreuter, M. R. Deng, J. D. Rudolf, C. Chang, A. Joachimiak, G. N. Phillips and B. ShenCharacterization and Crystal Structure of a Nonheme Diiron Monooxygenase Involved in Platensimycin and Platencin BiosynthesisJournal of the American Chemical Society141(31), 12406-1241210.1021/jacs.9b06183
2019Drennan, A. C., S. Krishna, M. A. Seeger, M. P. Andreas, J. M. Gardner, E. K. R. Sether, S. L. Jaspersen and I. Rayment. Structure and function of Spc42 coiled-coils in yeast centrosome assembly and duplication. Molecular Biology of the Cell 30(12), 1505-1522.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Drennan, A. C., S. Krishna, M. A. Seeger, M. P. Andreas, J. M. Gardner, E. K. R. Sether, S. L. Jaspersen and I. RaymentStructure and function of Spc42 coiled-coils in yeast centrosome assembly and duplicationMolecular Biology of the Cell30(12), 1505-152210.1091/mbc.E19-03-0167
2019Du, X., O. A. Volkov, R. M. Czerwinski, H. Tan, C. Huerta, E. R. Morton, J. P. Rizzi, P. M. Wehn, R. Xu, D. Nijhawan and E. M. Wallace. Structural basis and kinetic pathway of RBM39 recruitment to DCAF15 by a Sulfonamide Molecular Glue E7820. Structure 27(11), 1625-1633.e3.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Du, X., O. A. Volkov, R. M. Czerwinski, H. Tan, C. Huerta, E. R. Morton, J. P. Rizzi, P. M. Wehn, R. Xu, D. Nijhawan and E. M. WallaceStructural basis and kinetic pathway of RBM39 recruitment to DCAF15 by a Sulfonamide Molecular Glue E7820Structure27(11), 1625-1633.e310.1016/j.str.2019.10.005
2019Ehudin, M. A., L. B. Gee, S. Sabuncu, A. Braun, P. Moënne-Loccoz, B. Hedman, K. O. Hodgson, E. I. Solomon and K. D. Karlin. Tuning the Geometric and Electronic Structure of Synthetic High-Valent Heme Iron(IV), -Oxo Models in the Presence of a Lewis Acid and Various Axial Ligands. Journal of the American Chemical Society 141(14), 5942-5960.Stanford Synchrotron Radiation LightsourceEhudin, M. A., L. B. Gee, S. Sabuncu, A. Braun, P. Moënne-Loccoz, B. Hedman, K. O. Hodgson, E. I. Solomon and K. D. KarlinTuning the Geometric and Electronic Structure of Synthetic High-Valent Heme Iron(IV), -Oxo Models in the Presence of a Lewis Acid and Various Axial LigandsJournal of the American Chemical Society141(14), 5942-596010.1021/jacs.9b00795
2019Endapally, S., D. Frias, M. Grzemska, A. Gay, D. R. Tomchick, and A. Radhakrishnan. 2019. "Molecular Discrimination Between Two Conformations of Sphingomyelin in Plasma Membranes," Cell 176(5), 1040-1053.Advanced Photon SourceStructural Biology Center X-ray Macromolecular Crystallography (MX)Endapally, S., D. Frias, M. Grzemska, A. Gay, D. R. Tomchick, and A. RadhakrishnanMolecular discrimination between two conformations of sphingomyelin in plasma membranesCell176(5), 1040-105310.1016/j.cell.2018.12.042(related highlight) (feature story)
2019Evans, B. R., M. Foston, H. M. O’Neill, D. Reeves, C. Rempe, K. McGrath, A. J. Ragauskas and B. H. Davison. Production of deuterated biomass by cultivation of Lemna minor (duckweed), in D2O. Planta 249(5), 1465-1475.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologyEvans, B. R., M. Foston, H. M. O’Neill, D. Reeves, C. Rempe, K. McGrath, A. J. Ragauskas and B. H. DavisonProduction of deuterated biomass by cultivation of Lemna minor (duckweed), in D2OPlanta249(5), 1465-147510.1007/s00425-019-03097-3
2019Evans, B. R., S. V. Pingali, S. Bhagia, H. M. O'Neill and A. J. Ragauskas. Structural Studies of Deuterium-Labeled Switchgrass Biomass. Serial 1338, 17-32.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologyEvans, B. R., S. V. Pingali, S. Bhagia, H. M. O'Neill and A. J. RagauskasStructural Studies of Deuterium-Labeled Switchgrass BiomassSerial1338, 17-3210.1021/bk-2019-1338.ch002
2019Fang, X., J. Osipiuk, S. Chakravarthy, M. Yuan, W. M. Menzer, D. Nissen, P. Liang, D. A. Raba, K. Tuz, A. J. Howard, A. Joachimiak, D. D. L. Minh and O. Juarez. Conserved residue His-257 of Vibrio cholerae flavin transferase ApbE plays a critical role in substrate binding and catalysis. Journal of Biological Chemistry 294(37), 13800-13810.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Fang, X., J. Osipiuk, S. Chakravarthy, M. Yuan, W. M. Menzer, D. Nissen, P. Liang, D. A. Raba, K. Tuz, A. J. Howard, A. Joachimiak, D. D. L. Minh and O. JuarezConserved residue His-257 of Vibrio cholerae flavin transferase ApbE plays a critical role in substrate binding and catalysisJournal of Biological Chemistry294(37), 13800-1381010.1074/jbc.RA119.008261
2019Follmer, A. H., S. Tripathi and T. L. Poulos. Ligand and Redox Partner Binding Generates a New Conformational State in Cytochrome P450cam (CYP101A1). Journal of the American Chemical Society, 141(6) 2678–2683.Stanford Synchrotron Radiation LightsourceFollmer, A. H., S. Tripathi and T. L. PoulosLigand and Redox Partner Binding Generates a New Conformational State in Cytochrome P450cam (CYP101A1), Journal of the American Chemical Society141, 6, 2678–268310.1021/jacs.8b13079
2019Frihart, C. R., C. G. Hunt, N. Z. Plaza and J. E. Jakes. Adhesive-wood interactions in relation to failure in bonded wood products from the centimeter to nanometer scale. Conference Proceedings.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Frihart, C. R., C. G. Hunt, N. Z. Plaza and J. E. JakesAdhesive-wood interactions in relation to failure in bonded wood products from the centimeter to nanometer scaleConference Proceedings10.1021/jacs.8b13079.
2019Gallenito, M. J., G. W. Irvine, L. Zhang and G. Meloni. Coordination promiscuity guarantees metal substrate selection in transmembrane primary-active Zn2+ pumps. Chemical Communications 55(73), 10844-10847.Stanford Synchrotron Radiation LightsourceGallenito, M. J., G. W. Irvine, L. Zhang and G. MeloniCoordination promiscuity guarantees metal substrate selection in transmembrane primary-active Zn2+ pumpsChemical Communications55(73), 10844-1084710.1039/c9cc05936a
2019Garg, S., Y. Liu, U. Perez-Salas, L. Porcar and P. D. Butler. Anomalous inter-membrane cholesterol transport in fluid phase phosphoserine vesicles driven by headgroup ordered to disordered entropic transition. Chemistry and Physics of Lipids 223.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Garg, S., Y. Liu, U. Perez-Salas, L. Porcar and P. D. ButlerAnomalous inter-membrane cholesterol transport in fluid phase phosphoserine vesicles driven by headgroup ordered to disordered entropic transitionChemistry and Physics of Lipids223, 10.1016/j.chemphyslip.2019.05.004
2019Gerlits, O., K. Y. Ho, X. Cheng, D. Blumenthal, P. Taylor, A. Kovalevsky and Z. Radić. A new crystal form of human acetylcholinesterase for exploratory room-temperature crystallography studies. Chemico-Biological Interactions 309.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Gerlits, O., K. Y. Ho, X. Cheng, D. Blumenthal, P. Taylor, A. Kovalevsky and Z. RadićA new crystal form of human acetylcholinesterase for exploratory room-temperature crystallography studiesChemico-Biological Interactions309, 10.1016/j.cbi.2019.06.011
2019Gordon, J. B., A. C. Vilbert, I. M. Dimucci, S. N. MacMillan, K. M. Lancaster, P. Moënne-Loccoz and D. P. Goldberg. Activation of Dioxygen by a Mononuclear Nonheme Iron Complex: Sequential Peroxo, Oxo, and Hydroxo Intermediates. Journal of the American Chemical Society 141(44), 17533-17547.Stanford Synchrotron Radiation LightsourceGordon, J. B., A. C. Vilbert, I. M. Dimucci, S. N. MacMillan, K. M. Lancaster, P. Moënne-Loccoz and D. P. GoldbergActivation of Dioxygen by a Mononuclear Nonheme Iron Complex: Sequential Peroxo, Oxo, and Hydroxo IntermediatesJournal of the American Chemical Society141(44), 17533-1754710.1021/jacs.9b05274
2019Gordon, J. B., A. C. Vilbert, M. A. Siegler, K. M. Lancaster, P. Moënne-Loccoz and D. P. Goldberg. A Nonheme Thiolate-Ligated Cobalt Superoxo Complex: Synthesis and Spectroscopic Characterization, Computational Studies, and Hydrogen Atom Abstraction Reactivity. Journal of the American Chemical Society 141(8), 3641-3653.Stanford Synchrotron Radiation LightsourceGordon, J. B., A. C. Vilbert, M. A. Siegler, K. M. Lancaster, P. Moënne-Loccoz and D. P. GoldbergA Nonheme Thiolate-Ligated Cobalt Superoxo Complex: Synthesis and Spectroscopic Characterization, Computational Studies, and Hydrogen Atom Abstraction ReactivityJournal of the American Chemical Society141(8), 3641-365310.1021/jacs.8b13134
2019Grzechowiak, M., M. Ruszkowski, J. Sliwiak, K. Szpotkowski, M. Sikorski and M. Jaskolski. Crystal structures of plant inorganic pyrophosphatase, an enzyme with a moonlighting autoproteolytic activity. Biochemical Journal 476(16), 2297-2319.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Grzechowiak, M., M. Ruszkowski, J. Sliwiak, K. Szpotkowski, M. Sikorski and M. JaskolskiCrystal structures of plant inorganic pyrophosphatase, an enzyme with a moonlighting autoproteolytic activityBiochemical Journal476(16), 2297-231910.1042/BCJ20190427
2019Guo, G., M. Xu, Y. Chang, T. Luyten, B. Seitaj, W. Liu, P. Zhu, G. Bultynck, L. Shi, M. Quick and Q. Liu. Ion and pH Sensitivity of a TMBIM Ca2+ Channel. Structure 27(6), 1013-1021.e3.National Synchrotron Light Source IICenter for BioMolecular StructureX-ray Macromolecular Crystallography (MX)Guo, G., M. Xu, Y. Chang, T. Luyten, B. Seitaj, W. Liu, P. Zhu, G. Bultynck, L. Shi, M. Quick and Q. LiuIon and pH Sensitivity of a TMBIM Ca2+ ChannelStructure27(6), 1013-1021.e310.1016/j.str.2019.03.003
2019Guo, G., P. Zhu, M. R. Fuchs, W. Shi, B. Andi, Y. Gao, W. A. Hendrickson, S. McSweeney, and Q. Li. Synchrotron microcrystal native-SAD phasing at a low energy. IUCrJ 6(4), 532-542.NSLSIICenter for BioMolecular Structure X-ray Macromolecular Crystallography (MX)Guo, G., P. Zhu, M. R. Fuchs, W. Shi, B. Andi, Y. Gao, W. A. Hendrickson, S. McSweeney, and Q. LiSynchrotron microcrystal native-SAD phasing at a low energyIUCrJ6(4) 532-54210.1107/S2052252519004536(feature story)
2019Guo, J., M. A. Higgins, P. Daniel-Ivad and K. S. Ryan. An Asymmetric Reductase That Intercepts Acyclic Imino Acids Produced in Situ by a Partner Oxidase. Journal of the American Chemical Society 141(31), 12258-12267.Stanford Synchrotron Radiation LightsourceGuo, J., M. A. Higgins, P. Daniel-Ivad and K. S. RyanAn Asymmetric Reductase That Intercepts Acyclic Imino Acids Produced in Situ by a Partner OxidaseJournal of the American Chemical Society141(31), 12258-1226710.1021/jacs.9b03307
2019Ha, Y., H. Hu, K. Higgins, M. Maroney, B. Hedman, K. Hodgson and E. Solomon. The Electronic Structure of the Metal Active Site Determines the Geometric Structure and Function of the Metalloregulator NikR. Biochemistry 58(34), 3585-3591.Stanford Synchrotron Radiation LightsourceHa, Y., H. Hu, K. Higgins, M. Maroney, B. Hedman, K. Hodgson and E. SolomonThe Electronic Structure of the Metal Active Site Determines the Geometric Structure and Function of the Metalloregulator NikRBiochemistry58(34), 3585-359110.1021/acs.biochem.9b00542
2019Halabelian, L., M. Ravichandran, Y. Li, H. Zeng, A. Rao, L. Aravind and C. H. Arrowsmith. Structural basis of HMCES interactions with abasic DNA and multivalent substrate recognition. Nature Structural and Molecular Biology 26(7), 607-612.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Halabelian, L., M. Ravichandran, Y. Li, H. Zeng, A. Rao, L. Aravind and C. H. ArrowsmithStructural basis of HMCES interactions with abasic DNA and multivalent substrate recognitionNature Structural and Molecular Biology26(7), 607-61210.1038/s41594-019-0246-6
2019Henthorn, J. T., R. J. Arias, S. Koroidov, T. Kroll, D. Sokaras, U. Bergmann, D. C. Rees and S. DeBeer. Localized Electronic Structure of Nitrogenase FeMoco Revealed by Selenium K-Edge High Resolution X-ray Absorption Spectroscopy. Journal of the American Chemical Society 141(34), 13676-13688.Stanford Synchrotron Radiation LightsourceHenthorn, J. T., R. J. Arias, S. Koroidov, T. Kroll, D. Sokaras, U. Bergmann, D. C. Rees and S. DeBeerLocalized Electronic Structure of Nitrogenase FeMoco Revealed by Selenium K-Edge High Resolution X-ray Absorption SpectroscopyJournal of the American Chemical Society141(34), 13676-1368810.1021/jacs.9b06988
2019Hettle, A. G., J. K. Hobbs, B. Pluvinage, C. Vickers, K. T. Abe, O. Salama-Alber, B. E. McGuire, J. H. Hehemann, J. P. M. Hui, F. Berrue, A. Banskota, J. Zhang, E. M. Bottos, J. Van Hamme and A. B. Boraston. Insights into the κ/ι-carrageenan metabolism pathway of some marine Pseudoalteromonas species. Communications Biology 2(1).Stanford Synchrotron Radiation LightsourceHettle, A. G., J. K. Hobbs, B. Pluvinage, C. Vickers, K. T. Abe, O. Salama-Alber, B. E. McGuire, J. H. Hehemann, J. P. M. Hui, F. Berrue, A. Banskota, J. Zhang, E. M. Bottos, J. Van Hamme and A. B. BorastonInsights into the κ/ι-carrageenan metabolism pathway of some marine Pseudoalteromonas speciesCommunications Biology2(1), 10.1038/s42003-019-0721-y
2019Hill, B. L., R. Mascarenhas, H. P. Patel, M. D. Asencion Diez, R. Wu, A. A. Iglesias, D. Liu and M. A. Ballicora. Structural analysis reveals a pyruvate-binding activator site in the Agrobacterium tumefaciens ADP-glucose pyrophosphorylase. Journal of Biological Chemistry 294(4), 1338-1348.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Hill, B. L., R. Mascarenhas, H. P. Patel, M. D. Asencion Diez, R. Wu, A. A. Iglesias, D. Liu and M. A. BallicoraStructural analysis reveals a pyruvate-binding activator site in the Agrobacterium tumefaciens ADP-glucose pyrophosphorylaseJournal of Biological Chemistry294(4), 1338-134810.1074/jbc.RA118.004246
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2019Hu, Y., S. Tain, C. Foyer, D. Fou, H. Wang, W. Zhou, T. Liu, J. Ge, L. Li, and X. Lin. Efficient phloem transport significantly remobilizes cadmium from old to young organs in a hyperaccumulator Sedum alfredii. Journal of Hazardous Materials 365, 421—29.SSRLStructural Molecular Biology Resource X-ray ImagingHu, Y., S. Tain, C. Foyer, D. Fou, H. Wang, W. Zhou, T. Liu, J. Ge, L. Li, and X. LinEfficient phloem transport significantly remobilizes cadmium from old to young organs in a hyperaccumulator Sedum alfrediiJournal of Hazardous Materials365, 421-2910.1016/j.jhazmat.2018.11.034(related highlight)
2019Hu, Y., X. Cao, X. Li, Y. Wang, G. J. Boons, J. Deng and H. Jiang. The three-dimensional structure and recognition mechanism of Manduca sexta peptidoglycan recognition protein-1. Insect Biochemistry and Molecular Biology 108, 44-52.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Hu, Y., X. Cao, X. Li, Y. Wang, G. J. Boons, J. Deng and H. JiangThe three-dimensional structure and recognition mechanism of Manduca sexta peptidoglycan recognition protein-1Insect Biochemistry and Molecular Biology108, 44-5210.1016/j.ibmb.2019.03.001
2019Huang, A., H. Yao and B. D. Olsen. SANS partial structure factor analysis for determining protein-polymer interactions in semidilute solution. Soft Matter 15(37), 7350-7359.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Huang, A., H. Yao and B. D. OlsenSANS partial structure factor analysis for determining protein-polymer interactions in semidilute solutionSoft Matter15(37), 7350-735910.1039/c9sm00766k
2019Huang, H. T. and M. J. Maroney. Ni(II), Sensing by RcnR Does Not Require an FrmR-Like Intersubunit Linkage. Inorganic Chemistry 58(20), 13639-13653.Stanford Synchrotron Radiation LightsourceHuang, H. T. and M. J. MaroneyNi(II), Sensing by RcnR Does Not Require an FrmR-Like Intersubunit LinkageInorganic Chemistry58(20), 13639-1365310.1021/acs.inorgchem.9b01096
2019Hura, Greg L., Curtis D. Hodge, Daniel Rosenberg, Dmytro Guzenko, Jose M. Duarte, Bohdan Monastyrskyy, Sergei Grudinin, Andriy Kryshtafovych, John A. Tainer, Krzysztof Fidelis and Susan E. Tsutakawa. Small angle X-ray scattering-assisted protein structure prediction in CASP13 and emergence of solution structure differences. Proteins: Structure, Function, and Bioinformatics 87(12), 1298-1314.Advanced Light SourceBerkeley Synchrotron Infrared Structural BiologySynchrotron Infrared Hyperspectral ImagingHura, Greg L., Curtis D. Hodge, Daniel Rosenberg, Dmytro Guzenko, Jose M. Duarte, Bohdan Monastyrskyy, Sergei Grudinin, Andriy Kryshtafovych, John A. Tainer, Krzysztof Fidelis and Susan E. TsutakawaSmall angle X-ray scattering-assisted protein structure prediction in CASP13 and emergence of solution structure differencesProteins: Structure, Function, and Bioinformatics87(12), 1298-131410.1002/prot.25827
2019Jasniewski, A. J., J. Wilcoxen, K. Tanifuji, B. Hedman, K. O. Hodgson, R. D. Britt, Y. Hu and M. W. Ribbe. Spectroscopic Characterization of an Eight-Iron Nitrogenase Cofactor Precursor that Lacks the “9th Sulfur”. Angewandte Chemie - International Edition 58(41), 14703-14707.Stanford Synchrotron Radiation LightsourceJasniewski, A. J., J. Wilcoxen, K. Tanifuji, B. Hedman, K. O. Hodgson, R. D. Britt, Y. Hu and M. W. RibbeSpectroscopic Characterization of an Eight-Iron Nitrogenase Cofactor Precursor that Lacks the “9th Sulfur”Angewandte Chemie - International Edition58(41), 14703-1470710.1002/anie.201907593
2019Jiang, N., T. Yu, O. A. Darvish, S. Qian, I. K. Mkam Tsengam, V. John and D. Zhang. Crystallization-Driven Self-Assembly of Coil-Comb-Shaped Polypeptoid Block Copolymers: Solution Morphology and Self-Assembly Pathways. Macromolecules 52(22), 8867-8877.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Jiang, N., T. Yu, O. A. Darvish, S. Qian, I. K. Mkam Tsengam, V. John and D. ZhangCrystallization-Driven Self-Assembly of Coil-Comb-Shaped Polypeptoid Block Copolymers: Solution Morphology and Self-Assembly PathwaysMacromolecules52(22), 8867-887710.1021/acs.macromol.9b01546
2019Joe-Wong, C., D. R. Schlesinger, A. T. Chow and S. C. B. Myneni. Sea level rise produces abundant organobromines in salt-affected coastal wetlands. Geochemical Perspectives Letters 10, 31-35.Stanford Synchrotron Radiation LightsourceJoe-Wong, C., D. R. Schlesinger, A. T. Chow and S. C. B. MyneniSea level rise produces abundant organobromines in salt-affected coastal wetlandsGeochemical Perspectives Letters10(), 31-3510.7185/geochemlet.1911
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2019Keller, S., K. M. Wetterhorn, A. Vecellio, M. Seeger, I. Rayment and T. Schubert. Structural and functional analysis of an l-serine O-phosphate decarboxylase involved in norcobamide biosynthesis. FEBS Letters 593(21), 3040-3053.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Keller, S., K. M. Wetterhorn, A. Vecellio, M. Seeger, I. Rayment and T. SchubertStructural and functional analysis of an l-serine O-phosphate decarboxylase involved in norcobamide biosynthesisFEBS Letters593(21), 3040-305310.1002/1873-3468.13543
2019Keown, W., T. A. G. Large, L. Chiang, E. C. Wasinger and T. D. P. Stack. Exclusive imidazole ligation to Cu III 2 O2 and CuIIICuII2O2 cores. Chemical Communications 55(51), 7390-7393.Stanford Synchrotron Radiation LightsourceKeown, W., T. A. G. Large, L. Chiang, E. C. Wasinger and T. D. P. StackExclusive imidazole ligation to Cu III 2 O2 and CuIIICuII2O2 coresChemical Communications55(51), 7390-739310.1039/c9cc02982f
2019Khadka, N., E. R. Farquhar, H. E. Hill, W. Shi, J. Von Lintig and P. D. Kiser. Evidence for distinct rate-limiting steps in the cleavage of alkenes by carotenoid cleavage dioxygenases. Journal of Biological Chemistry 294(27), 10596-10606.National Synchrotron Light Source II, Stanford Synchrotron Radiation LightsourceCenter for BioMolecular StructureX-ray Macromolecular Crystallography (MX)Khadka, N., E. R. Farquhar, H. E. Hill, W. Shi, J. Von Lintig and P. D. KiserEvidence for distinct rate-limiting steps in the cleavage of alkenes by carotenoid cleavage dioxygenasesJournal of Biological Chemistry294(27), 10596-1060610.1074/jbc.RA119.007535
2019Kim, S., W. Zeng, S. Bernard, J. Liao, M. Venkateshwaran, J. M. Ane and Y. Jiang. Ca2+-regulated Ca2+ channels with an RCK gating ring control plant symbiotic associations. Nature Communications 10(1).Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Kim, S., W. Zeng, S. Bernard, J. Liao, M. Venkateshwaran, J. M. Ane and Y. JiangCa2+-regulated Ca2+ channels with an RCK gating ring control plant symbiotic associationsNature Communications10(1), 10.1038/s41467-019-11698-5
2019Klein, A. R., S. E. Bone, E. Bakker, Z. Chang and L. Aristilde. Abiotic phosphorus recycling from adsorbed ribonucleotides on a ferrihydrite-type mineral: Probing solution and surface species. Journal of Colloid and Interface Science 547(), 171-182.Stanford Synchrotron Radiation LightsourceKlein, A. R., S. E. Bone, E. Bakker, Z. Chang and L. AristildeAbiotic phosphorus recycling from adsorbed ribonucleotides on a ferrihydrite-type mineral: Probing solution and surface speciesJournal of Colloid and Interface Science547(), 171-18210.1016/j.jcis.2019.03.086
2019Koebke, K. J., F. Yu, C. Van Stappen, T. B. J. Pinter, A. Deb, J. E. Penner-Hahn and V. L. Pecoraro. Methylated Histidines Alter Tautomeric Preferences that Influence the Rates of Cu Nitrite Reductase Catalysis in Designed Peptides. Journal of the American Chemical Society 141(19), 7765-7775.Stanford Synchrotron Radiation LightsourceKoebke, K. J., F. Yu, C. Van Stappen, T. B. J. Pinter, A. Deb, J. E. Penner-Hahn and V. L. PecoraroMethylated Histidines Alter Tautomeric Preferences that Influence the Rates of Cu Nitrite Reductase Catalysis in Designed PeptidesJournal of the American Chemical Society141(19), 7765-777510.1021/jacs.9b00196
2019Kroeck, K. G., M. D. Sacco, E. W. Smith, X. Zhang, D. Shoun, A. Akhtar, S. E. Darch, F. Cohen, L. D. Andrews, J. E. Knox and Y. Chen. Discovery of dual-activity small-molecule ligands of Pseudomonas aeruginosa LpxA and LpxD using SPR and X-ray crystallography. Scientific Reports 9(1).Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Kroeck, K. G., M. D. Sacco, E. W. Smith, X. Zhang, D. Shoun, A. Akhtar, S. E. Darch, F. Cohen, L. D. Andrews, J. E. Knox and Y. ChenDiscovery of dual-activity small-molecule ligands of Pseudomonas aeruginosa LpxA and LpxD using SPR and X-ray crystallographyScientific Reports9(1), 10.1038/s41598-019-51844-z
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2019Lacasse, M. J., K. L. Summers, M. Khorasani-Motlagh, G. N. George and D. B. Zamble. Bimodal Nickel-Binding Site on Escherichia coli [NiFe]-Hydrogenase Metallochaperone HypA. Inorganic Chemistry 58(20), 13604-13618.Stanford Synchrotron Radiation LightsourceLacasse, M. J., K. L. Summers, M. Khorasani-Motlagh, G. N. George and D. B. ZambleBimodal Nickel-Binding Site on Escherichia coli [NiFe]-Hydrogenase Metallochaperone HypAInorganic Chemistry58(20), 13604-1361810.1021/acs.inorgchem.9b00897
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2019Laureanti, J. A., G. W. Buchko, S. Katipamula, Q. Su, J. C. Linehan, O. A. Zadvornyy, J. W. Peters and M. O'Hagan. Protein Scaffold Activates Catalytic CO2 Hydrogenation by a Rhodium Bis(diphosphine), Complex. ACS Catalysis 9(1), 620-625.Stanford Synchrotron Radiation LightsourceLaureanti, J. A., G. W. Buchko, S. Katipamula, Q. Su, J. C. Linehan, O. A. Zadvornyy, J. W. Peters and M. O'HaganProtein Scaffold Activates Catalytic CO2 Hydrogenation by a Rhodium Bis(diphosphine), ComplexACS Catalysis9(1), 620-62510.1021/acscatal.8b02615
2019Lee, S. G., E. Salomon, O. Yu, and J. M. Jez. 2019. Molecular basis for branched steviol glucoside biosynthesis. Proceedings of the National Academies USA 116(26), 13131-13136.APSStructural Biology Center X-ray Macromolecular Crystallography (MX)Lee, S. G., E. Salomon, O. Yu, and J. M. Jez. 2019Molecular basis for branched steviol glucoside biosynthesisProceedings of the National Academies USA116(26), 13131-1313610.1073/pnas.1902104116(feature story) (related highlight)
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2019Lepore, R., A. Kryshtafovych, M. Alahuhta, H. A. Veraszto, Y. J. Bomble, J. C. Bufton, A. N. Bullock, C. Caba, H. Cao, O. R. Davies, A. Desfosses, M. Dunne, K. Fidelis, C. W. Goulding, M. Gurusaran, I. Gutsche, C. J. Harding, M. D. Hartmann, C. S. Hayes, A. Joachimiak, P. G. Leiman, P. Loppnau, A. L. Lovering, V. V. Lunin, K. Michalska, I. Mir-Sanchis, A. K. Mitra, J. Moult, G. N. Phillips Jr, D. M. Pinkas, P. A. Rice, Y. Tong, M. Topf, J. D. Walton and T. Schwede. Target highlights in CASP13: Experimental target structures through the eyes of their authors. Proteins: Structure, Function and Bioinformatics 87(12), 1037-1057.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Lepore, R., A. Kryshtafovych, M. Alahuhta, H. A. Veraszto, Y. J. Bomble, J. C. Bufton, A. N. Bullock, C. Caba, H. Cao, O. R. Davies, A. Desfosses, M. Dunne, K. Fidelis, C. W. Goulding, M. Gurusaran, I. Gutsche, C. J. Harding, M. D. Hartmann, C. S. Hayes, A. Joachimiak, P. G. Leiman, P. Loppnau, A. L. Lovering, V. V. Lunin, K. Michalska, I. Mir-Sanchis, A. K. Mitra, J. Moult, G. N. Phillips Jr, D. M. Pinkas, P. A. Rice, Y. Tong, M. Topf, J. D. Walton and T. SchwedeTarget highlights in CASP13: Experimental target structures through the eyes of their authorsProteins: Structure, Function and Bioinformatics87(12), 1037-105710.1002/prot.25805
2019Letourneau, M. K., M. J. Marshall, M. Grant, P. M. Freeze, D. G. Strawn, B. Lai, A. C. Dohnalkova, J. B. Harsh, D. M. Weller and L. S. Thomashow. Phenazine-1-Carboxylic Acid-Producing Bacteria Enhance the Reactivity of Iron Minerals in Dryland and Irrigated Wheat Rhizospheres. Environmental Science & Technology 53(24), 14273-14284.Stanford Synchrotron Radiation LightsourceLetourneau, M. K., M. J. Marshall, M. Grant, P. M. Freeze, D. G. Strawn, B. Lai, A. C. Dohnalkova, J. B. Harsh, D. M. Weller and L. S. ThomashowPhenazine-1-Carboxylic Acid-Producing Bacteria Enhance the Reactivity of Iron Minerals in Dryland and Irrigated Wheat RhizospheresEnvironmental Science & Technology53(24), 14273-1428410.1021/acs.est.9b03962
2019Lewis, B. E., Z. Mason, A. V. Rodrigues, M. Nuth, E. Dizin, J. A. Cowan and T. L. Stemmler. Unique roles of iron and zinc binding to the yeast Fe-S cluster scaffold assembly protein "Isu1". Metallomics 11(11), 1820-1835.Stanford Synchrotron Radiation LightsourceLewis, B. E., Z. Mason, A. V. Rodrigues, M. Nuth, E. Dizin, J. A. Cowan and T. L. StemmlerUnique roles of iron and zinc binding to the yeast Fe-S cluster scaffold assembly protein "Isu1"Metallomics11(11), 1820-183510.1039/c9mt00172g
2019Li, F., Y. Hu, S. Qi, X. Luo and H. Yu. Structural basis of tubulin detyrosination by vasohibins. Nature Structural and Molecular Biology 26(7), 583-591.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Li, F., Y. Hu, S. Qi, X. Luo and H. YuStructural basis of tubulin detyrosination by vasohibinsNature Structural and Molecular Biology26(7), 583-59110.1038/s41594-019-0242-x
2019Li, J. C., F. Nastertorabi, W. Xuan, G. W. Han, R. C. Stevens and P. G. Schultz. A Single Reactive Noncanonical Amino Acid Is Able to Dramatically Stabilize Protein Structure. ACS Chemical Biology 14(6), 1150-1153.Stanford Synchrotron Radiation LightsourceLi, J. C., F. Nastertorabi, W. Xuan, G. W. Han, R. C. Stevens and P. G. SchultzA Single Reactive Noncanonical Amino Acid Is Able to Dramatically Stabilize Protein StructureACS Chemical Biology14(6), 1150-115310.1021/acschembio.9b00002
2019Li, J., R. V. Tappero, A. S. Acerbo, H. Yan, Y. Chu, G. V. Lowry and J. M. Unrine. Effect of CeO2 nanomaterial surface functional groups on tissue and subcellular distribution of Ce in tomato (Solanum lycopersicum). Environmental Science: Nano 6(1), 273-285.Advanced Photon Source, National Synchrotron Light Source IICenter for BioMolecular StructureX-ray Absorption and Emission Spectroscopy, X-ray Fluorescence ImagingLi, J., R. V. Tappero, A. S. Acerbo, H. Yan, Y. Chu, G. V. Lowry and J. M. UnrineEffect of CeO2 nanomaterial surface functional groups on tissue and subcellular distribution of Ce in tomato (Solanum lycopersicum), Environmental Science: Nano6(1), 273-28510.1039/c8en01287c(related highlight)
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2019Li, L., D. Chang, M. M. L. Arras, W. Li, T. Li, J. K. Keum, P. V. Bonnesen, X. Peng and K. Hong. Isotope Effects on the Crystallization Kinetics of Selectively Deuterated Poly(ε-Caprolactone). Journal of Polymer Science, Part B: Polymer Physics 57(12), 771-779.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Li, L., D. Chang, M. M. L. Arras, W. Li, T. Li, J. K. Keum, P. V. Bonnesen, X. Peng and K. HongIsotope Effects on the Crystallization Kinetics of Selectively Deuterated Poly(ε-Caprolactone), Journal of Polymer Science, Part B: Polymer Physics57(12), 771-77910.1002/polb.24831
2019Li, L., M. M. L. Arras, T. Li, W. Li, D. Chang, J. K. Keum, P. V. Bonnesen, S. Qian, X. Peng, B. Lee and K. Hong. Alternating crystalline lamellar structures from thermodynamically miscible poly(ε-caprolactone), H/D blends. Polymer 175, 320-328.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Li, L., M. M. L. Arras, T. Li, W. Li, D. Chang, J. K. Keum, P. V. Bonnesen, S. Qian, X. Peng, B. Lee and K. HongAlternating crystalline lamellar structures from thermodynamically miscible poly(ε-caprolactone), H/D blendsPolymer175(), 320-32810.1016/j.polymer.2019.05.055
2019Li, Y., K. Jin, A. Perez-Valdespino, K. Federkiewicz, A. Davis, M.W. Maciejewski, P. Setlow, and Bing Hao. "Structural and functional analyses of the N-terminal domain of the A subunit of a Bacillus megaterium spore germinant receptor." PNAS 116 (23), 11470–11479 (2019).NSLSIICenter for BioMolecular Structure X-ray Macromolecular Crystallography (MX)Li, Y., K. Jin, A. Perez-Valdespino, K. Federkiewicz, A. Davis, M.W. Maciejewski, P. Setlow, and Bing HaoStructural and functional analyses of the N-terminal domain of the A subunit of a Bacillus megaterium spore germinant receptor.PNAS116 (23), 11470–1147910.1073/pnas.1903675116(feature story) (related highlight)
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2019Lin, C. Y., M. G. Romei, L. M. Oltrogge, I. I. Mathews and S. G. Boxer. Unified Model for Photophysical and Electro-Optical Properties of Green Fluorescent Proteins. Journal of the American Chemical Society 141(38), 15250-15265.Stanford Synchrotron Radiation LightsourceLin, C. Y., M. G. Romei, L. M. Oltrogge, I. I. Mathews and S. G. BoxerUnified Model for Photophysical and Electro-Optical Properties of Green Fluorescent ProteinsJournal of the American Chemical Society141(38), 15250-1526510.1021/jacs.9b07152
2019Lin, G., S. C. Weiss, S. Vergara, C. Camacho and G. Calero. Transcription with a laser: Radiation-damage-free diffraction of RNA Polymerase II crystals. Methods 159-160, 23-28.Stanford Synchrotron Radiation LightsourceLin, G., S. C. Weiss, S. Vergara, C. Camacho and G. CaleroTranscription with a laser: Radiation-damage-free diffraction of RNA Polymerase II crystalsMethods159-160(), 23-2810.1016/j.ymeth.2019.04.011
2019Lin, W., S. Mandal, D. Degen, M. S. Cho, Y. Feng, K. Das and R. H. Ebright. Structural basis of ECF-σ-factor-dependent transcription initiation. Nature Communications 10(1).Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Lin, W., S. Mandal, D. Degen, M. S. Cho, Y. Feng, K. Das and R. H. EbrightStructural basis of ECF-σ-factor-dependent transcription initiationNature Communications10(1), 10.1038/s41467-019-08443-3
2019Liu, Ke, Ming Lei, Zhibin Wu, Bing Gan, Harry Cheng, Yanjun Li and Jinrong Min. Structural analyses reveal that MBD3 is a methylated CG binder. FEBS Journal 286(16), 3240-3254.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Liu, Ke, Ming Lei, Zhibin Wu, Bing Gan, Harry Cheng, Yanjun Li and Jinrong MinStructural analyses reveal that MBD3 is a methylated CG binderFEBS Journal286(16), 3240-325410.1111/febs.14850
2019Lu, X., X. X. Li, M. S. Seo, Y. M. Lee, M. Clémancey, P. Maldivi, J. M. Latour, R. Sarangi, S. Fukuzumi and W. Nam. A Mononuclear Nonheme Iron(IV), -Amido Complex Relevant for the Compound II Chemistry of Cytochrome P450. Journal of the American Chemical Society 141(1), 80-83.Stanford Synchrotron Radiation LightsourceLu, X., X. X. Li, M. S. Seo, Y. M. Lee, M. Clémancey, P. Maldivi, J. M. Latour, R. Sarangi, S. Fukuzumi and W. NamA Mononuclear Nonheme Iron(IV), -Amido Complex Relevant for the Compound II Chemistry of Cytochrome P450Journal of the American Chemical Society141(1), 80-8310.1021/jacs.8b11045
2019Martiel, I., H. M. Müller-Werkmeister and A. E. Cohen. Strategies for sample delivery for femtosecond crystallography. Acta Crystallographica Section D: Structural Biology 75, 160-177.Stanford Synchrotron Radiation LightsourceMartiel, I., H. M. Müller-Werkmeister and A. E. CohenStrategies for sample delivery for femtosecond crystallographyActa Crystallographica Section D: Structural Biology75, 160-17710.1107/S2059798318017953
2019McCallum, M., S. Benlekbir, S. Nguyen, S. Tammam, J. L. Rubinstein, L. L. Burrows and P. L. Howell. Multiple conformations facilitate PilT function in the type IV pilus. Nature Communications 10(1).National Synchrotron Light Source IICenter for BioMolecular StructureX-ray Macromolecular Crystallography (MX)McCallum, M., S. Benlekbir, S. Nguyen, S. Tammam, J. L. Rubinstein, L. L. Burrows and P. L. HowellMultiple conformations facilitate PilT function in the type IV pilusNature Communications10(1), 10.1038/s41467-019-13070-z
2019McPherson, A., J. Day and S. B. Larson. Lattice Interactions in Crystals of Soybean Trypsin Inhibitor (Kunitz), Produced by Inclusion of 1,5-Disulfonylnaphthalene. Crystal Growth and Design 19(5), 2963-2969.Stanford Synchrotron Radiation LightsourceMcPherson, A., J. Day and S. B. LarsonLattice Interactions in Crystals of Soybean Trypsin Inhibitor (Kunitz), Produced by Inclusion of 1,5-DisulfonylnaphthaleneCrystal Growth and Design19(5), 2963-296910.1021/acs.cgd.9b00164
2019Meagher, M., L. B. Epling and E. J. Enemark. DNA translocation mechanism of the MCM complex and implications for replication initiation. Nature Communications 10(1), .DOI: 10.1038/s41467-019-11074-3Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Meagher, M., L. B. Epling and E. J. EnemarkDNA translocation mechanism of the MCM complex and implications for replication initiationNature Communications10(1), 10.1038/s41467-019-11074-3
2019Michalska, K., K. Zhang, Z.M. March, C. Hatzos-Skintges, G. Pintilie, L. Bigelow, L.M. Castellano, L.J. Miles, M.E. Jackrel, E. Chuang, R. Jedrzejczak, J. Shorter, W. Chiu, and A. Joachimiak. Structure of Calcarisporiella thermophila Hsp104 disaggregase that antagonizes diverse proteotoxic misfolding events. Structure 27(3)449-463.e447.APSStructural Biology Center X-ray Macromolecular Crystallography (MX), Multiscale Imaging (or Hybrid) ApproachesMichalska, K., K. Zhang, Z.M. March, C. Hatzos-Skintges, G. Pintilie, L. Bigelow, L.M. Castellano, L.J. Miles, M.E. Jackrel, E. Chuang, R. Jedrzejczak, J. Shorter, W. Chiu, and A. JoachimiakStructure of Calcarisporiella thermophila Hsp104 disaggregase that antagonizes diverse proteotoxic misfolding eventsStructure27(3) 449-463.e44710.1016/j.str.2018.11.001(feature story) (related highlight)
2019Miller, M. S., S. Maheshwari, W. Shi, Y. Gao, N. Chu, A. S. Soares, P. A. Cole, L. Mario Amzel, M. R. Fuchs, J. Jakoncic and S. B. Gabelli. Getting the most out of your crystals: Data collection at the new high-flux, Microfocus MX beamlines at NSLS-II. Molecules 24(3).National Synchrotron Light Source IICenter for BioMolecular StructureX-ray Macromolecular Crystallography (MX)Miller, M. S., S. Maheshwari, W. Shi, Y. Gao, N. Chu, A. S. Soares, P. A. Cole, L. Mario Amzel, M. R. Fuchs, J. Jakoncic and S. B. GabelliGetting the most out of your crystals: Data collection at the new high-flux, Microfocus MX beamlines at NSLS-IIMolecules24(3), 10.3390/molecules24030496
2019Montgomery, J. E., J. A. Donnelly, S. W. Fanning, T. E. Speltz, X. Shangguan, J. S. Coukos, G. L. Greene and R. E. Moellering. Versatile Peptide Macrocyclization with Diels-Alder Cycloadditions. Journal of the American Chemical Society 141(41), 16374-16381.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Montgomery, J. E., J. A. Donnelly, S. W. Fanning, T. E. Speltz, X. Shangguan, J. S. Coukos, G. L. Greene and R. E. MoelleringVersatile Peptide Macrocyclization with Diels-Alder CycloadditionsJournal of the American Chemical Society141(41), 16374-1638110.1021/jacs.9b07578
2019Morgada, M. N., F. Emiliani, K. N. Chacón, D. Álvarez-Paggi, D. H. Murgida, N. J. Blackburn, L. A. Abriata and A. J. Vila. PH-Induced Binding of the Axial Ligand in an Engineered CuA Site Favors the πu State. Inorganic Chemistry 58(23), 15687-15691.Stanford Synchrotron Radiation LightsourceMorgada, M. N., F. Emiliani, K. N. Chacón, D. Álvarez-Paggi, D. H. Murgida, N. J. Blackburn, L. A. Abriata and A. J. VilaPH-Induced Binding of the Axial Ligand in an Engineered CuA Site Favors the πu StateInorganic Chemistry58(23), 15687-1569110.1021/acs.inorgchem.9b01868
2019Ngo, T. D., A. C. Partin and Y. Nam. RNA Specificity and Autoregulation of DDX17, a Modulator of MicroRNA Biogenesis. Cell Reports 29(12), 4024-4035.e5.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Ngo, T. D., A. C. Partin and Y. NamRNA Specificity and Autoregulation of DDX17, a Modulator of MicroRNA BiogenesisCell Reports29(12), 4024-4035.e510.1016/j.celrep.2019.11.059
2019Nittinger, E., P. Gibbons, C. Eigenbrot, D. R. Davies, B. Maurer, C. L. Yu, J. R. Kiefer, A. Kuglstatter, J. Murray, D. F. Ortwine, Y. Tang and V. Tsui. Water molecules in protein–ligand interfaces. Evaluation of software tools and SAR comparison. Journal of Computer-Aided Molecular Design 33(3), 307-330.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Nittinger, E., P. Gibbons, C. Eigenbrot, D. R. Davies, B. Maurer, C. L. Yu, J. R. Kiefer, A. Kuglstatter, J. Murray, D. F. Ortwine, Y. Tang and V. TsuiWater molecules in protein–ligand interfaces. Evaluation of software tools and SAR comparisonJournal of Computer-Aided Molecular Design33(3), 307-33010.1007/s10822-019-00187-y
2019Northrup, P.. The TES beamline (8-BM), at NSLS-II: Tender-energy spatially resolved X-ray absorption spectroscopy and X-ray fluorescence imaging. Journal of Synchrotron Radiation 26, 2064-2074.National Synchrotron Light Source IINorthrup, P.The TES beamline (8-BM), at NSLS-II: Tender-energy spatially resolved X-ray absorption spectroscopy and X-ray fluorescence imagingJournal of Synchrotron Radiation26(), 2064-207410.1107/S1600577519012761
2019Ohayon, Y. P., C. Hernandez, A. R. Chandrasekaran, X. Wang, H. O. Abdallah, M. A. Jong, M. G. Mohsen, R. Sha, J. J. Birktoft, P. S. Lukeman, P. M. Chaikin, S. L. Ginell, C. Mao and N. C. Seeman. Designing Higher Resolution Self-Assembled 3D DNA Crystals via Strand Terminus Modifications. ACS Nano 13(7), 7957-7965.Advanced Photon SourceAdvanced Photon Source Structural Biology CenterX-ray Macromolecular Crystallography (MX)Ohayon, Y. P., C. Hernandez, A. R. Chandrasekaran, X. Wang, H. O. Abdallah, M. A. Jong, M. G. Mohsen, R. Sha, J. J. Birktoft, P. S. Lukeman, P. M. Chaikin, S. L. Ginell, C. Mao and N. C. SeemanDesigning Higher Resolution Self-Assembled 3D DNA Crystals via Strand Terminus ModificationsACS Nano13(7), 7957-796510.1021/acsnano.9b02430
2019Osko, J. D., B. W. Roose, S. A. Shinsky and D. W. Christianson. Structure and Function of the Acetylpolyamine Amidohydrolase from the Deep Earth Halophile Marinobacter subterrani. Biochemistry 58(36), 3755-3766.National Synchrotron Light Source II, Stanford Synchrotron Radiation LightsourceCenter for BioMolecular StructureX-ray Macromolecular Crystallography (MX)Osko, J. D., B. W. Roose, S. A. Shinsky and D. W. ChristiansonStructure and Function of the Acetylpolyamine Amidohydrolase from the Deep Earth Halophile Marinobacter subterraniBiochemistry58(36), 3755-376610.1021/acs.biochem.9b00582
2019Paczkowski, J. E., A. R. McCready, J. P. Cong, Z. Li, P. D. Jeffrey, C. D. Smith, B. R. Henke, F. M. Hughson and B. L. Bassler. An Autoinducer Analogue Reveals an Alternative Mode of Ligand Binding for the LasR Quorum-Sensing Receptor. ACS Chemical Biology 14(3), 378-389.National Synchrotron Light Source II, Stanford Synchrotron Radiation LightsourceCenter for BioMolecular StructureX-ray Macromolecular Crystallography (MX)Paczkowski, J. E., A. R. McCready, J. P. Cong, Z. Li, P. D. Jeffrey, C. D. Smith, B. R. Henke, F. M. Hughson and B. L. BasslerAn Autoinducer Analogue Reveals an Alternative Mode of Ligand Binding for the LasR Quorum-Sensing ReceptorACS Chemical Biology14(3), 378-38910.1021/acschembio.8b00971
2019Padavannil, A., P. Sarkar, S. J. Kim, T. Cagatay, J. Jiou, C. A. Brautigam, D. R. Tomchick, A. Sali, S. D’Arcy and Y. M. Chook. Importin-9 wraps around the H2A-H2B core to act as nuclear importer and histone chaperone. eLife 8.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Padavannil, A., P. Sarkar, S. J. Kim, T. Cagatay, J. Jiou, C. A. Brautigam, D. R. Tomchick, A. Sali, S. D’Arcy and Y. M. ChookImportin-9 wraps around the H2A-H2B core to act as nuclear importer and histone chaperoneeLife810.7554/eLife.43630
2019Park, J., B. Selvaraj, A. C. McShan, S. E. Boyken, K. Y. Wei, G. Oberdorfer, W. Degrado, N. G. Sgourakis, M. J. Cuneo, D. A. A. Myles and D. Baker. De novo design of a homo-trimeric amantadine-binding protein. eLife 8.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Park, J., B. Selvaraj, A. C. McShan, S. E. Boyken, K. Y. Wei, G. Oberdorfer, W. Degrado, N. G. Sgourakis, M. J. Cuneo, D. A. A. Myles and D. BakerDe novo design of a homo-trimeric amantadine-binding proteineLife810.7554/eLife.47839
2019Pemberton, O. A., P. Jaishankar, A. Akhtar, J. L. Adams, L. N. Shaw, A. R. Renslo and Y. Chen. Heteroaryl Phosphonates as Noncovalent Inhibitors of Both Serine- And Metallocarbapenemases. Journal of Medicinal Chemistry 62(18), 8480-8496.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Pemberton, O. A., P. Jaishankar, A. Akhtar, J. L. Adams, L. N. Shaw, A. R. Renslo and Y. ChenHeteroaryl Phosphonates as Noncovalent Inhibitors of Both Serine- And MetallocarbapenemasesJournal of Medicinal Chemistry62(18), 8480-849610.1021/acs.jmedchem.9b00728
2019Pyles, H., S. Zhang, J. J. De Yoreo and D. Baker. Controlling protein assembly on inorganic crystals through designed protein interfaces. Nature 571(7764), 251-256.Advanced Light SourceBerkeley Synchrotron Infrared Structural BiologySynchrotron Infrared Hyperspectral ImagingPyles, H., S. Zhang, J. J. De Yoreo and D. BakerControlling protein assembly on inorganic crystals through designed protein interfacesNature571(7764), 251-25610.1038/s41586-019-1361-6
2019Rao, G., K. B. Alwan, N. J. Blackburn and R. D. Britt. Incorporation of Ni2+, Co2+, and Selenocysteine into the Auxiliary Fe-S Cluster of the Radical SAM Enzyme HydG. Inorganic Chemistry 58(19), 12601-12608.Stanford Synchrotron Radiation LightsourceRao, G., K. B. Alwan, N. J. Blackburn and R. D. BrittIncorporation of Ni2+, Co2+, and Selenocysteine into the Auxiliary Fe-S Cluster of the Radical SAM Enzyme HydGInorganic Chemistry58(19), 12601-1260810.1021/acs.inorgchem.9b01293
2019Rao, G., S. A. Pattenaude, K. Alwan, N. J. Blackburn, R. D. Britt and T. B. Rauchfuss. The binuclear cluster of [FeFe] hydrogenase is formed with sulfur donated by cysteine of an [Fe(Cys), (CO), 2(CN), ] organometallic precursor. Proceedings of the National Academy of Sciences of the United States of America 116(42), 20850-20855.Stanford Synchrotron Radiation LightsourceRao, G., S. A. Pattenaude, K. Alwan, N. J. Blackburn, R. D. Britt and T. B. RauchfussThe binuclear cluster of [FeFe] hydrogenase is formed with sulfur donated by cysteine of an [Fe(Cys), (CO), 2(CN), ] organometallic precursorProceedings of the National Academy of Sciences of the United States of America116(42), 20850-2085510.1073/pnas.1913324116
2019Rao, S., D. Gurbani, G. Du, R. A. Everley, C. M. Browne, A. Chaikuad, L. Tan, M. Schröder, S. Gondi, S. B. Ficarro, T. Sim, N. D. Kim, M. J. Berberich, S. Knapp, J. A. Marto, K. D. Westover, P. K. Sorger and N. S. Gray. Leveraging Compound Promiscuity to Identify Targetable Cysteines within the Kinome. Cell Chemical Biology 26(6), 818-829.e9.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Rao, S., D. Gurbani, G. Du, R. A. Everley, C. M. Browne, A. Chaikuad, L. Tan, M. Schröder, S. Gondi, S. B. Ficarro, T. Sim, N. D. Kim, M. J. Berberich, S. Knapp, J. A. Marto, K. D. Westover, P. K. Sorger and N. S. GrayLeveraging Compound Promiscuity to Identify Targetable Cysteines within the KinomeCell Chemical Biology26(6), 818-829.e910.1016/j.chembiol.2019.02.021
2019Rawal, T. B., A. Ozcan, S. H. Liu, S. V. Pingali, O. Akbilgic, L. Tetard, H. O'Neill, S. Santra and L. Petridis. Interaction of Zinc Oxide Nanoparticles with Water: Implications for Catalytic Activity. ACS Applied Nano Materials 2(12), 4257-4266.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Rawal, T. B., A. Ozcan, S. H. Liu, S. V. Pingali, O. Akbilgic, L. Tetard, H. O'Neill, S. Santra and L. PetridisInteraction of Zinc Oxide Nanoparticles with Water: Implications for Catalytic ActivityACS Applied Nano Materials2(12), 4257-426610.1021/acsanm.9b00714
2019Rcheulishvili, A. N., E. Gintury, L. Tugushi, Manana Gurielidze and Yessica Holman. Influence of na on the assimilation of Cr(VI), , Zn and Cu by the chromium-resistant bacterium Arthrobacter globiformis 151B. Bulletin of the Georgian National Academy of Sciences 13, 95-99. Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramSynchrotron Infrared Hyperspectral ImagingRcheulishvili, A. N., E. Gintury, L. Tugushi, Manana Gurielidze and Yessica HolmanInfluence of na on the assimilation of Cr(VI), , Zn and Cu by the chromium-resistant bacterium Arthrobacter globiformis 151BBulletin of the Georgian National Academy of Sciences13, 95-9910.17628/ecb.2019.8.128-131
2019Rcheulishvili, O. ; Tsverava, L. ; Rcheulishvili, A. ; Gurielidze, M. ; Solomonia, R. ; Metreveli, N. ; Jojua, N. ; Holman, H. Y.. Heavy metals specific proteomic responses of a highly resistant Arthrobacter globiformis 151B.. Annals of Agrarian Science 17(2), 218-229.Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramSynchrotron Infrared Hyperspectral ImagingRcheulishvili, O. ; Tsverava, L. ; Rcheulishvili, A. ; Gurielidze, M. ; Solomonia, R. ; Metreveli, N. ; Jojua, N. ; Holman, H. Y.Heavy metals specific proteomic responses of a highly resistant Arthrobacter globiformis 151B.Annals of Agrarian Science17(2), 218-229
2019Ren, F., B. L. Logeman, X. Zhang, Y. Liu, D. J. Thiele and P. Yuan. X-ray structures of the high-affinity copper transporter Ctr1. Nature Communications 10(1).Advanced Photon SourceAdvanced Photon Source Structural Biology CenterX-ray Macromolecular Crystallography (MX)Ren, F., B. L. Logeman, X. Zhang, Y. Liu, D. J. Thiele and P. YuanX-ray structures of the high-affinity copper transporter Ctr1Nature Communications10(1), 10.1038/s41467-019-09376-7
2019Righetto, G. L., D. Sriranganadane, L. Halabelian, C. G. Chiodi, J. M. Elkins, K. B. Massirer, O. Gileadi, M. Menossi and R. M. Couñago. The C-Terminal Domains SnRK2 Box and ABA Box Have a Role in Sugarcane SnRK2s Auto-Activation and Activity. Frontiers in Plant Science 10.Advanced Photon SourceAdvanced Photon Source Structural Biology CenterX-ray Macromolecular Crystallography (MX)Righetto, G. L., D. Sriranganadane, L. Halabelian, C. G. Chiodi, J. M. Elkins, K. B. Massirer, O. Gileadi, M. Menossi and R. M. CouñagoThe C-Terminal Domains SnRK2 Box and ABA Box Have a Role in Sugarcane SnRK2s Auto-Activation and ActivityFrontiers in Plant Science10, 10.3389/fpls.2019.01105
2019Rittle, J., M. J. Field, M. T. Green, and F. A. Tezcan.  An efficient, step-economical strategy for the design of functional metalloproteins. Nature Chemistry 11, 434-441.SSRLStructural Molecular Biology Resource X-ray Macromolecular Crystallography (MX)Rittle, J., M. J. Field, M. T. Green, and F. A. TezcanAn efficient, step-economical strategy for the design of functional metalloproteinsNature Chemistry11, 434-44110.1038/s41557-019-0218-9(related highlight)
2019Roose, B. W. and D. W. Christianson. Structural Basis of Tryptophan Reverse N-Prenylation Catalyzed by CymD. Biochemistry 58(30), 3232-3242.National Synchrotron Light Source IINational Synchrotron Light Source II Center for BioMolecular StructureX-ray Macromolecular Crystallography (MX)Roose, B. W. and D. W. ChristiansonStructural Basis of Tryptophan Reverse N-Prenylation Catalyzed by CymDBiochemistry58(30), 3232-324210.1021/acs.biochem.9b00399
2019Roth, M. S., S. D. Gallaher, D. J. Westcott, M. Iwai, K. B. Louie, M. Mueller, A. Walter, F. Foflonker, B. P. Bowen, N. N. Ataii, J. Song, J. H. Chen, C. E. Blaby-Haas, C. Larabell, M. Auer, T. R. Northen, S. S. Merchant and K. K. Niyogia. Regulation of oxygenic photosynthesis during trophic transitions in the green alga Chromochloris zofingiensis. Plant Cell 31(3), 579-601.Advanced Light SourceNational Center for X-Ray Tomography Soft X-ray TomographyRoth, M. S., S. D. Gallaher, D. J. Westcott, M. Iwai, K. B. Louie, M. Mueller, A. Walter, F. Foflonker, B. P. Bowen, N. N. Ataii, J. Song, J. H. Chen, C. E. Blaby-Haas, C. Larabell, M. Auer, T. R. Northen, S. S. Merchant and K. K. NiyogiaRegulation of oxygenic photosynthesis during trophic transitions in the green alga Chromochloris zofingiensisPlant Cell31(3), 579-60110.1105/tpc.18.00742
2019Rutledge, H. L., J. Rittle, L. M. Williamson, W. A. Xu, D. M. Gagnon and F. A. Tezcan. Redox-Dependent Metastability of the Nitrogenase P-Cluster. Journal of the American Chemical Society 141(25), 10091-10098.Stanford Synchrotron Radiation LightsourceRutledge, H. L., J. Rittle, L. M. Williamson, W. A. Xu, D. M. Gagnon and F. A. TezcanRedox-Dependent Metastability of the Nitrogenase P-ClusterJournal of the American Chemical Society141(25), 10091-1009810.1021/jacs.9b04555
2019Sanchez, J. C., M. Carrillo, S. Pandey, M. Noda, L. Aldama, D. Feliz, E. Claesson, W. Y. Wahlgren, G. Tracy, P. Duong, A. C. Nugent, A. Field, V. Šrajer, C. Kupitz, S. Iwata, E. Nango, R. Tanaka, T. Tanaka, L. Fangjia, K. Tono, S. Owada, S. Westenhoff, M. Schmidt and E. A. Stojković. High-resolution crystal structures of a myxobacterial phytochrome at cryo and room temperatures. Structural Dynamics 6(5).Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Sanchez, J. C., M. Carrillo, S. Pandey, M. Noda, L. Aldama, D. Feliz, E. Claesson, W. Y. Wahlgren, G. Tracy, P. Duong, A. C. Nugent, A. Field, V. Šrajer, C. Kupitz, S. Iwata, E. Nango, R. Tanaka, T. Tanaka, L. Fangjia, K. Tono, S. Owada, S. Westenhoff, M. Schmidt and E. A. StojkovićHigh-resolution crystal structures of a myxobacterial phytochrome at cryo and room temperaturesStructural Dynamics6(5), 10.1063/1.5120527
2019Selvan, D., P. Prasad, E. R. Farquhar, Y. Shi, S. Crane, Y. Zhang and S. Chakraborty. Redesign of a Copper Storage Protein into an Artificial Hydrogenase. ACS Catalysis 9(7), 5847-5859.Stanford Synchrotron Radiation LightsourceSelvan, D., P. Prasad, E. R. Farquhar, Y. Shi, S. Crane, Y. Zhang and S. ChakrabortyRedesign of a Copper Storage Protein into an Artificial HydrogenaseACS Catalysis9(7), 5847-585910.1021/acscatal.9b00360
2019Seyfferth, A. L., M. Limmer and W. Wu. Si and water management drives changes in Fe and Mn pools that affect as cycling and uptake in rice. Soil Systems 3(3), 44212.Stanford Synchrotron Radiation LightsourceSeyfferth, A. L., M. Limmer and W. WuSi and water management drives changes in Fe and Mn pools that affect as cycling and uptake in riceSoil Systems3(3), 4421210.3390/soilsystems3030058
2019Shah, R., S. Huang, S. V. Pingali, D. Sawada, Y. Pu, M. Rodriguez, A. J. Ragauskas, S. H. Kim, B. R. Evans, B. H. Davison and H. O'Neill. Hemicellulose-Cellulose Composites Reveal Differences in Cellulose Organization after Dilute Acid Pretreatment. Biomacromolecules 20(2), 893-903.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Shah, R., S. Huang, S. V. Pingali, D. Sawada, Y. Pu, M. Rodriguez, A. J. Ragauskas, S. H. Kim, B. R. Evans, B. H. Davison and H. O'NeillHemicellulose-Cellulose Composites Reveal Differences in Cellulose Organization after Dilute Acid PretreatmentBiomacromolecules20(2), 893-90310.1021/acs.biomac.8b01511
2019Sharma, A., A. Muyskens, J. Guinness, M. L. Polizzotto, M. Fuentes, R. V. Tappero, Y. C. K. Chen-Wiegart, J. Thieme, G. J. Williams, A. S. Acerbo and D. Hesterberg. Multi-element effects on arsenate accumulation in a geochemical matrix determined using μ-XRF, μ-XANES and spatial statistics. Journal of Synchrotron Radiation 26, 1967-1979.National Synchrotron Light Source IISharma, A., A. Muyskens, J. Guinness, M. L. Polizzotto, M. Fuentes, R. V. Tappero, Y. C. K. Chen-Wiegart, J. Thieme, G. J. Williams, A. S. Acerbo and D. HesterbergMulti-element effects on arsenate accumulation in a geochemical matrix determined using μ-XRF, μ-XANES and spatial statisticsJournal of Synchrotron Radiation26, 1967-197910.1107/S1600577519012785
2019Sharma, V. K., D. G. Hayes, S. Gupta, V. S. Urban, H. M. O'Neill, S. V. Pingali, M. Ohl and E. Mamontov. Incorporation of Melittin Enhances Interfacial Fluidity of Bicontinuous Microemulsions. Journal of Physical Chemistry C 123(17), 11197-11206.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Sharma, V. K., D. G. Hayes, S. Gupta, V. S. Urban, H. M. O'Neill, S. V. Pingali, M. Ohl and E. MamontovIncorporation of Melittin Enhances Interfacial Fluidity of Bicontinuous MicroemulsionsJournal of Physical Chemistry C123(17), 11197-1120610.1021/acs.jpcc.9b00103
2019Sharma, V.K. and S. Qian. Effect of an Antimicrobial Peptide on Lateral Segregation of Lipids, a Structure and Dynamics Study by Neutron Scattering. Langmuir 35(11) 4152-4160.SNS-HFIRCenter for Structural Molecular Biology Small-Angle Neutron Scattering (SANS), Neutron SpectroscopySharma, V.K. and S. QianEffect of an Antimicrobial Peptide on Lateral Segregation of Lipids, a Structure and Dynamics Study by Neutron ScatteringLangmuir35(11) 4152-416010.1021/acs.langmuir.8b04158(related highlight)
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2019Shrestha, U. R., S. Smith, S. V. Pingali, H. Yang, M. Zahran, L. Breunig, L. A. Wilson, M. Kowali, J. D. Kubicki, D. J. Cosgrove, H. M. O’Neill and L. Petridis. Arabinose substitution effect on xylan rigidity and self-aggregation. Cellulose 26(4), 2267-2278.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Shrestha, U. R., S. Smith, S. V. Pingali, H. Yang, M. Zahran, L. Breunig, L. A. Wilson, M. Kowali, J. D. Kubicki, D. J. Cosgrove, H. M. O’Neill and L. PetridisArabinose substitution effect on xylan rigidity and self-aggregationCellulose26(4), 2267-227810.1007/s10570-018-2202-8
2019Sierra, R. G., A. Batyuk, Z. Sun, A. Aquila, M. S. Hunter, T. J. Lane, M. Liang, C. H. Yoon, R. Alonso-Mori, R. Armenta, J. C. Castagna, M. Hollenbeck, T. O. Osier, M. Hayes, J. Aldrich, R. Curtis, J. E. Koglin, T. Rendahl, E. Rodriguez, S. Carbajo, S. Guillet, R. Paul, P. Hart, K. Nakahara, G. Carini, H. Demirci, E. H. Dao, B. M. Hayes, Y. P. Rao, M. Chollet, Y. Feng, F. D. Fuller, C. Kupitz, T. Sato, M. H. Seaberg, S. Song, T. B. Van Driel, H. Yavas, D. Zhu, A. E. Cohen, S. Wakatsuki and S. Boutet. The macromolecular femtosecond crystallography instrument at the linac coherent light source. Journal of Synchrotron Radiation 26(2), 346-357.Stanford Synchrotron Radiation LightsourceSierra, R. G., A. Batyuk, Z. Sun, A. Aquila, M. S. Hunter, T. J. Lane, M. Liang, C. H. Yoon, R. Alonso-Mori, R. Armenta, J. C. Castagna, M. Hollenbeck, T. O. Osier, M. Hayes, J. Aldrich, R. Curtis, J. E. Koglin, T. Rendahl, E. Rodriguez, S. Carbajo, S. Guillet, R. Paul, P. Hart, K. Nakahara, G. Carini, H. Demirci, E. H. Dao, B. M. Hayes, Y. P. Rao, M. Chollet, Y. Feng, F. D. Fuller, C. Kupitz, T. Sato, M. H. Seaberg, S. Song, T. B. Van Driel, H. Yavas, D. Zhu, A. E. Cohen, S. Wakatsuki and S. BoutetThe macromolecular femtosecond crystallography instrument at the linac coherent light sourceJournal of Synchrotron Radiation26(2), 346-35710.1107/S1600577519001577
2019Sierra-Gomez Y., A. Rodriguez-Hernandez, P. Cano-Sanchez, H. Gomez-Velasco, A. Hernandez-Santoyo, D. Siliqi,and A. Rodriguez-Romero. 2019. "A Biophysical and Structural Study of Two Chitinases from Agave tequilana and their Potential Tole as Defense Proteins," FEBS Journal 286(23), 4778–96.SSRLStructural Molecular Biology Resource Solution X-ray Scattering (SAXS)Sierra-Gomez Y., A. Rodriguez-Hernandez, P. Cano-Sanchez, H. Gomez-Velasco, A. Hernandez-Santoyo, D. Siliqi, and A. Rodriguez-RomeroA biophysical and structural study of two chitinases from Agave tequilana and their potential role as defense proteinsFEBS Journal286(23), 4778-479610.1111/febs.14993(related highlight)
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2019Stagno, J. R., P. Yu, M. A. Dyba, Y. X. Wang and Y. Liu. Heavy-atom labeling of RNA by PLOR for de novo crystallographic phasing. PLoS ONE 14(4).Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Stagno, J. R., P. Yu, M. A. Dyba, Y. X. Wang and Y. LiuHeavy-atom labeling of RNA by PLOR for de novo crystallographic phasingPLoS ONE14(4), 10.1371/journal.pone.0215555
2019Stingaciu, L.-R., H.M. O'Neill, M. Liberton, H.B. Pakrasi, and V.S. Urban. Influence of Chemically Disrupted Photosynthesis on Cyanobacterial Thylakoid Dynamics in Synechocystis sp. PCC 6803. Scientific Reports 9(1), 95711.SNS-HFIRCenter for Structural Molecular Biology Neutron Spectroscopy, Small-Angle Neutron Scattering (SANS)Stingaciu, L.-R., H.M. O'Neill, M. Liberton, H.B. Pakrasi, and V.S. UrbanInfluence of Chemically Disrupted Photosynthesis on Cyanobacterial Thylakoid Dynamics in Synechocystis sp. PCC 6803Scientific Reports9(1), 9571110.1038/s41598-019-42024-0(related highlight)
2019Taberman, H., C. S. Bury, M. J. Van Der Woerd, E. H. Snell and E. F. Garman. Structural knowledge or X-ray damage? A case study on xylose isomerase illustrating both. Journal of Synchrotron Radiation 26, 931-944.Stanford Synchrotron Radiation LightsourceTaberman, H., C. S. Bury, M. J. Van Der Woerd, E. H. Snell and E. F. GarmanStructural knowledge or X-ray damage? A case study on xylose isomerase illustrating bothJournal of Synchrotron Radiation26, 931-94410.1107/S1600577519005599
2019Takematsu, K., H. R. Williamson, P. Nikolovski, J. T. Kaiser, Y. Sheng, P. Pospíšil, M. Towrie, J. Heyda, D. Hollas, S. Záliš, H. B. Gray, A. Vlček and J. R. Winkler. Two Tryptophans Are Better Than One in Accelerating Electron Flow through a Protein. ACS Central Science 5(1), 192-200.Stanford Synchrotron Radiation LightsourceTakematsu, K., H. R. Williamson, P. Nikolovski, J. T. Kaiser, Y. Sheng, P. Pospíšil, M. Towrie, J. Heyda, D. Hollas, S. Záliš, H. B. Gray, A. Vlček and J. R. WinklerTwo Tryptophans Are Better Than One in Accelerating Electron Flow through a ProteinACS Central Science5(1), 192-20010.1021/acscentsci.8b00882
2019Tan, P., Z. Fu, L. Petridis, S. Qian, D. You, D. Wei, J. Li and L. Hong. A two-fold structural classification method for determining the accurate ensemble of protein structures. Communications in Computational Physics 25(4), 1010-1023.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologyTan, P., Z. Fu, L. Petridis, S. Qian, D. You, D. Wei, J. Li and L. HongA two-fold structural classification method for determining the accurate ensemble of protein structuresCommunications in Computational Physics25(4), 1010-102310.4208/cicp.OA-2018-0140
2019Tang, S., N. D. Hicks, Y. S. Cheng, A. Silva, S. M. Fortune and J. C. Sacchettini. Structural and functional insight into the Mycobacterium tuberculosis protein PrpR reveals a novel type of transcription factor. Nucleic acids research 47(18), 9934-9949.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Tang, S., N. D. Hicks, Y. S. Cheng, A. Silva, S. M. Fortune and J. C. SacchettiniStructural and functional insight into the Mycobacterium tuberculosis protein PrpR reveals a novel type of transcription factorNucleic acids research47(18), 9934-994910.1093/nar/gkz724
2019Taylor, C. A., K. W. Cormier, S. E. Keenan, S. Earnest, S. Stippec, C. Wichaidit, Y. C. Juang, J. Wang, S. Y. Shvartsman, E. J. Goldsmith and M. H. Cobb. Functional divergence caused by mutations in an energetic hotspot in ERK2. Proceedings of the National Academy of Sciences of the United States of America 116(31), 15514-15523.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Taylor, C. A., K. W. Cormier, S. E. Keenan, S. Earnest, S. Stippec, C. Wichaidit, Y. C. Juang, J. Wang, S. Y. Shvartsman, E. J. Goldsmith and M. H. CobbFunctional divergence caused by mutations in an energetic hotspot in ERK2Proceedings of the National Academy of Sciences of the United States of America116(31), 15514-1552310.1073/pnas.1905015116
2019Thomson, B., J. Both, Y. Wu, R. M. Parrish, T. J. Martínez and S. G. Boxer. Perturbation of Short Hydrogen Bonds in Photoactive Yellow Protein via Noncanonical Amino Acid Incorporation. Journal of Physical Chemistry B 123(23), 4844-4849.DOI: 10.1021/acs.jpcb.9b01571Stanford Synchrotron Radiation LightsourceThomson, B., J. Both, Y. Wu, R. M. Parrish, T. J. Martínez and S. G. BoxerPerturbation of Short Hydrogen Bonds in Photoactive Yellow Protein via Noncanonical Amino Acid IncorporationJournal of Physical Chemistry B123(23), 4844-484910.1021/acs.jpcb.9b01571
2019Tsai, J. T., N. Sung, J. Lee, C. Chang, S. Lee and F. T. F. Tsai. Crystal Structure of the YcjX Stress Protein Reveals a Ras-Like GTP-Binding Protein. Journal of Molecular Biology 431(17), 3179-3190.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Tsai, J. T., N. Sung, J. Lee, C. Chang, S. Lee and F. T. F. TsaiCrystal Structure of the YcjX Stress Protein Reveals a Ras-Like GTP-Binding ProteinJournal of Molecular Biology431(17), 3179-319010.1016/j.jmb.2019.06.006
2019Tsednee, M., M. Castruita, P. A. Salomé, A. Sharma, B. E. Lewis, S. R. Schmollinger, D. Strenkert, K. Holbrook, M. S. Otegui, K. Khatua, S. Das, A. Datta, S. Chen, C. Ramon, M. Ralle, P. K. Weber, T. L. Stemmler, J. Pett-Ridge, B. M. Hoffman and S. S. Merchant. Manganese co-localizes with calcium and phosphorus in Chlamydomonas acidocalcisomes and is mobilized in manganese-deficient conditions. Journal of Biological Chemistry 294(46), 17626-17641.Stanford Synchrotron Radiation LightsourceTsednee, M., M. Castruita, P. A. Salomé, A. Sharma, B. E. Lewis, S. R. Schmollinger, D. Strenkert, K. Holbrook, M. S. Otegui, K. Khatua, S. Das, A. Datta, S. Chen, C. Ramon, M. Ralle, P. K. Weber, T. L. Stemmler, J. Pett-Ridge, B. M. Hoffman and S. S. MerchantManganese co-localizes with calcium and phosphorus in Chlamydomonas acidocalcisomes and is mobilized in manganese-deficient conditionsJournal of Biological Chemistry294(46), 17626-1764110.1074/jbc.RA119.009130
2019Vakser, I. A. and A. Joachimiak. Editorial overview: Macromolecular assemblies. Current Opinion in Structural Biology 55, iii-v.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Vakser, I. A. and A. JoachimiakEditorial overview: Macromolecular assembliesCurrent Opinion in Structural Biology55, iii-v10.1016/j.sbi.2019.07.003
2019Van Stappen, C., A. T. Thorhallsson, L. Decamps, R. Bjornsson and S. Debeer. Resolving the structure of the E1 state of Mo nitrogenase through Mo and Fe K-edge EXAFS and QM/MM calculations. Chemical Science 10(42), 9807-9821.Stanford Synchrotron Radiation LightsourceVan Stappen, C., A. T. Thorhallsson, L. Decamps, R. Bjornsson and S. DebeerResolving the structure of the E1 state of Mo nitrogenase through Mo and Fe K-edge EXAFS and QM/MM calculationsChemical Science10(42), 9807-982110.1039/c9sc02187f
2019Van Stappen, C., R. Davydov, Z. Y. Yang, R. Fan, Y. Guo, E. Bill, L. C. Seefeldt, B. M. Hoffman and S. Debeer. Spectroscopic Description of the E1 State of Mo Nitrogenase Based on Mo and Fe X-ray Absorption and Mössbauer Studies. Inorganic Chemistry 58(18), 12365-12376.Stanford Synchrotron Radiation LightsourceVan Stappen, C., R. Davydov, Z. Y. Yang, R. Fan, Y. Guo, E. Bill, L. C. Seefeldt, B. M. Hoffman and S. DebeerSpectroscopic Description of the E1 State of Mo Nitrogenase Based on Mo and Fe X-ray Absorption and Mössbauer StudiesInorganic Chemistry58(18), 12365-1237610.1021/acs.inorgchem.9b01951
2019Walters, A. D., K. Amoateng, R. Wang, J. H. Chen, G. McDermott, C. A. Larabell, O. Gadal and O. Cohen-Fix. Nuclear envelope expansion in budding yeast is independent of cell growth and does not determine nuclear volume. Molecular Biology of the Cell 30(1), 131-145.Advanced Light SourceNational Center for X-Ray Tomography Soft X-ray TomographyWalters, A. D., K. Amoateng, R. Wang, J. H. Chen, G. McDermott, C. A. Larabell, O. Gadal and O. Cohen-FixNuclear envelope expansion in budding yeast is independent of cell growth and does not determine nuclear volumeMolecular Biology of the Cell30(1), 131-14510.1091/mbc.E18-04-0204
2019Wang, J. Y., W. Chen, M. Nagao, P. Shelat, B. A. G. Hammer, G. T. Tietjen, K. D. Cao, J. M. Henderson, L. He, B. Lin, B. Akgun, M. Meron, S. Qian, S. Ward, J. D. Marks, T. Emrick and K. Y. C. Lee. Tailoring Biomimetic Phosphorylcholine-Containing Block Copolymers as Membrane-Targeting Cellular Rescue Agents. Biomacromolecules 20(9), 3385-3391.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Wang, J. Y., W. Chen, M. Nagao, P. Shelat, B. A. G. Hammer, G. T. Tietjen, K. D. Cao, J. M. Henderson, L. He, B. Lin, B. Akgun, M. Meron, S. Qian, S. Ward, J. D. Marks, T. Emrick and K. Y. C. LeeTailoring Biomimetic Phosphorylcholine-Containing Block Copolymers as Membrane-Targeting Cellular Rescue AgentsBiomacromolecules20(9), 3385-339110.1021/acs.biomac.9b00621
2019Wang, R., T. Rosen, C. Zhan, S. Chodankar, J. Chen, P. R. Sharma, S. K. Sharma, T. Liu and B. S. Hsiao. Morphology and flow behavior of cellulose nanofibers dispersed in glycols. Macromolecules 52(15), 5499-5509.National Synchrotron Light Source IICenter for BioMolecular StructureSmall-Angle X-ray Scattering (SAXS)Wang, R., T. Rosen, C. Zhan, S. Chodankar, J. Chen, P. R. Sharma, S. K. Sharma, T. Liu and B. S. HsiaoMorphology and flow behavior of cellulose nanofibers dispersed in glycolsMacromolecules52(15), 5499-550910.1021/acs.macromol.9b01036
2019Wang, S., Y. Li, J. Gong, S. Ye, X. Yang, R. Zhang and C. Ma. Munc18 and Munc13 serve as a functional template to orchestrate neuronal SNARE complex assembly. Nature Communications 10(1).Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Wang, S., Y. Li, J. Gong, S. Ye, X. Yang, R. Zhang and C. MaMunc18 and Munc13 serve as a functional template to orchestrate neuronal SNARE complex assemblyNature Communications10(1), 10.1038/s41467-018-08028-6
2019Wang, Y., I. Shin, Y. Fu, K. L. Colabroy and A. Liu. Crystal Structures of L-DOPA Dioxygenase from Streptomyces sclerotialus. Biochemistry 58(52), 5339-5350.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Wang, Y., I. Shin, Y. Fu, K. L. Colabroy and A. LiuCrystal Structures of L-DOPA Dioxygenase from Streptomyces sclerotialusBiochemistry58(52), 5339-535010.1021/acs.biochem.9b00396
2019Wei, Y., D. Resetca, Z. Li, I. Johansson-Åkhe, A. Ahlner, S. Helander, A. Wallenhammar, V. Morad, B. Raught, B. Wallner, T. Kokubo, Y. Tong, L. Z. Penn and M. Sunnerhagen. Multiple direct interactions of TBP with the MYC oncoprotein. Nature Structural and Molecular Biology 26(11), 1035-1043.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Wei, Y., D. Resetca, Z. Li, I. Johansson-Åkhe, A. Ahlner, S. Helander, A. Wallenhammar, V. Morad, B. Raught, B. Wallner, T. Kokubo, Y. Tong, L. Z. Penn and M. SunnerhagenMultiple direct interactions of TBP with the MYC oncoproteinNature Structural and Molecular Biology26(11), 1035-104310.1038/s41594-019-0321-z
2019Wenke, B. B., T. Spatzal and D. C. Rees. Site-Specific Oxidation State Assignments of the Iron Atoms in the [4Fe:4S] 2+/1+/0 States of the Nitrogenase Fe-Protein. Angewandte Chemie - International Edition 58(12), 3894-3897.Stanford Synchrotron Radiation LightsourceWenke, B. B., T. Spatzal and D. C. ReesSite-Specific Oxidation State Assignments of the Iron Atoms in the [4Fe:4S] 2+/1+/0 States of the Nitrogenase Fe-ProteinAngewandte Chemie - International Edition58(12), 3894-389710.1002/anie.201813966
2019Wu, D., X. Su, J. Lu, S. Li, B. L. Hood, S. Vasile, N. Potluri, X. Diao, Y. Kim, S. Khorasanizadeh and F. Rastinejad. Bidirectional modulation of HIF-2 activity through chemical ligands. Nature Chemical Biology 15(4), 367-376.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Wu, D., X. Su, J. Lu, S. Li, B. L. Hood, S. Vasile, N. Potluri, X. Diao, Y. Kim, S. Khorasanizadeh and F. RastinejadBidirectional modulation of HIF-2 activity through chemical ligandsNature Chemical Biology15(4), 367-37610.1038/s41589-019-0234-5
2019Yang, Y., A. Alford, V. Kozlovskaya, S. Zhao, H. Joshi, E. Kim, S. Qian, V. Urban, D. Cropek, A. Aksimentiev and E. Kharlampieva. Effect of temperature and hydrophilic ratio on the structure of poly(N-vinylcaprolactam), -block-poly(dimethylsiloxane), -block-poly(N-vinylcaprolact am), polymersomes. ACS Appl Polym Mater 1(4), 722-736.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Yang, Y., A. Alford, V. Kozlovskaya, S. Zhao, H. Joshi, E. Kim, S. Qian, V. Urban, D. Cropek, A. Aksimentiev and E. KharlampievaEffect of temperature and hydrophilic ratio on the structure of poly(N-vinylcaprolactam), -block-poly(dimethylsiloxane), -block-poly(N-vinylcaprolact am), polymersomesACS Appl Polym Mater1(4), 722-73610.1021/acsapm.8b00259
2019Yin, Z., J. T. Kaelber and R. H. Ebright. Structural basis of Q-dependent antitermination. Proceedings of the National Academy of Sciences of the United States of America 116(37), 18384-18390.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Yin, Z., J. T. Kaelber and R. H. EbrightStructural basis of Q-dependent antiterminationProceedings of the National Academy of Sciences of the United States of America116(37), 18384-1839010.1073/pnas.1909801116
2019Zárate-Romero, A., V. Stojanoff, A. E. Cohen, W. Hansberg and E. Rudiño-Piñera. X-ray driven reduction of Cpd I of Catalase-3 from N. crassa reveals differential sensitivity of active sites and formation of ferrous state. Archives of Biochemistry and Biophysics 666, 107-115.Stanford Synchrotron Radiation LightsourceZárate-Romero, A., V. Stojanoff, A. E. Cohen, W. Hansberg and E. Rudiño-PiñeraX-ray driven reduction of Cpd I of Catalase-3 from N. crassa reveals differential sensitivity of active sites and formation of ferrous stateArchives of Biochemistry and Biophysics666, 107-11510.1016/j.abb.2019.03.020
2019Zhan, C. B., P. R. Sharma, L. H. Geng, S. K. Sharma, R. F. Wang, R. Joshi and B. S. Hsiao. Structural characterization of carboxyl cellulose nanofibers extracted from underutilized sources. Science China Technological Sciences 62(6), 971-981.National Synchrotron Light Source IICenter for BioMolecular StructureSmall-Angle X-ray Scattering (SAXS)Zhan, C. B., P. R. Sharma, L. H. Geng, S. K. Sharma, R. F. Wang, R. Joshi and B. S. HsiaoStructural characterization of carboxyl cellulose nanofibers extracted from underutilized sourcesScience China Technological Sciences62(6), 971-98110.1007/s11431-018-9441-1
2019Zhang, B., L. J. Rajakovich, D. Van Cura, E. J. Blaesi, A. J. Mitchell, C. R. Tysoe, X. Zhu, B. R. Streit, Z. Rui, W. Zhang, A. K. Boal, C. Krebs and J. M. Bollinger. Substrate-Triggered Formation of a Peroxo-Fe2(III/III), Intermediate during Fatty Acid Decarboxylation by UndA. Journal of the American Chemical Society 141(37), 14510-14514.Stanford Synchrotron Radiation LightsourceZhang, B., L. J. Rajakovich, D. Van Cura, E. J. Blaesi, A. J. Mitchell, C. R. Tysoe, X. Zhu, B. R. Streit, Z. Rui, W. Zhang, A. K. Boal, C. Krebs and J. M. BollingerSubstrate-Triggered Formation of a Peroxo-Fe2(III/III), Intermediate during Fatty Acid Decarboxylation by UndAJournal of the American Chemical Society141(37), 14510-1451410.1021/jacs.9b06093
2019Zhang, H., C. Dong, L. Li, G. A. Wasney and J. Min. Structural insights into the modulatory role of the accessory protein WYL1 in the Type VI-D CRISPR-Cas system. Nucleic Acids Research 47(10), 5420-5428.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Zhang, H., C. Dong, L. Li, G. A. Wasney and J. MinStructural insights into the modulatory role of the accessory protein WYL1 in the Type VI-D CRISPR-Cas systemNucleic Acids Research47(10), 5420-542810.1093/nar/gkz269
2018Afanador, G. A., D. R. Tomchick and M. A. Phillips. Trypanosomatid Deoxyhypusine Synthase Activity Is Dependent on Shared Active-Site Complementation between Pseudoenzyme Paralogs. Structure 26(11), 1499-1512.e5.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Afanador, G. A., D. R. Tomchick and M. A. PhillipsTrypanosomatid Deoxyhypusine Synthase Activity Is Dependent on Shared Active-Site Complementation between Pseudoenzyme ParalogsStructure26(11), 1499-1512.e510.1016/j.str.2018.07.012
2018Alford, A., V. Kozlovskaya, B. Xue, N. Gupta, W. Higgins, D. Pham-Hua, L. He, V. S. Urban, H. M. Tse and E. Kharlampieva. Manganoporphyrin-Polyphenol Multilayer Capsules as Radical and Reactive Oxygen Species (ROS), Scavengers. Chemistry of Materials 30(2), 344-357.Spallation Neutron Source/High Flux Isotope ReactorAlford, A., V. Kozlovskaya, B. Xue, N. Gupta, W. Higgins, D. Pham-Hua, L. He, V. S. Urban, H. M. Tse and E. KharlampievaManganoporphyrin-Polyphenol Multilayer Capsules as Radical and Reactive Oxygen Species (ROS), ScavengersChemistry of Materials30(2), 344-35710.1021/acs.chemmater.7b03502
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2018Axel A. Ekman , Tia E. Plautz , Jian-Hua Chen , Gerry McDermott , Mark A. Le Gros , Carolyn A. Larabell. Soft X-ray Tomography: Techniques and Applications. Book Section 817-851.Advanced Light SourceNational Center for X-Ray Tomography Soft X-ray TomographyAxel A. Ekman , Tia E. Plautz , Jian-Hua Chen , Gerry McDermott , Mark A. Le Gros , Carolyn A. LarabellSoft X-ray Tomography: Techniques and ApplicationsBook Section817-85110.1201/9781351228251-41
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2018Bi, Y., E. Mann, C. Whitfield and J. Zimmer. "Architecture of a Channel-Forming O-Antigen Polysaccharide ABC Transporter," Nature 553(7688), 361–5.Advanced Photon Source, National Synchrotron Light Source IICenter for BioMolecular StructureX-ray Macromolecular Crystallography (MX)Bi, Y., E. Mann, C. Whitfield and J. ZimmerArchitecture of a channel-forming O-antigen polysaccharide ABC transporterNature553(7688), 361-36510.1038/nature25190(related highlight)
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2018Boville, C. E., R. A. Scheele, P. Koch, S. Brinkmann-Chen, A. R. Buller and F. H. Arnold. Engineered Biosynthesis of β-Alkyl Tryptophan Analogues. Angewandte Chemie - International Edition 57(45), 14764-14768.Stanford Synchrotron Radiation LightsourceBoville, C. E., R. A. Scheele, P. Koch, S. Brinkmann-Chen, A. R. Buller and F. H. ArnoldEngineered Biosynthesis of β-Alkyl Tryptophan AnaloguesAngewandte Chemie - International Edition57(45), 14764-1476810.1002/anie.201807998
2018Bratkowski, M., I. C. Unarta, L. Zhu, M. Shubbar, X. Huang and X. Liu. Structural dissection of an interaction between transcription initiation and termination factors implicated in promoter-terminator cross-talk. Journal of Biological Chemistry 293(5), 1651-1665.Advanced Photon Source, Stanford Synchrotron Radiation LightsourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Bratkowski, M., I. C. Unarta, L. Zhu, M. Shubbar, X. Huang and X. LiuStructural dissection of an interaction between transcription initiation and termination factors implicated in promoter-terminator cross-talkJournal of Biological Chemistry293(5), 1651-166510.1074/jbc.M117.811521
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2018Buller, A. R., P. Van Roye, J. K. B. Cahn, R. A. Scheele, M. Herger and F. H. Arnold. 2018. "Directed Evolution Mimics Allosteric Activation by Stepwise Tuning of the Conformational Ensemble," Journal of the American Chemical Society 140(23), 7256–66.Stanford Synchrotron Radiation LightsourceStructural Molecular Biology ResourceX-ray Macromolecular CrystallographyBuller, A. R., P. Van Roye, J. K. B. Cahn, R. A. Scheele, M. Herger and F. H. ArnoldDirected Evolution Mimics Allosteric Activation by Stepwise Tuning of the Conformational EnsembleJournal of the American Chemical Society140(23), 7256-726610.1021/jacs.8b03490(related highlight)
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2018Chang, C. Y., J. R. Lohman, T. Huang, K. Michalska, L. Bigelow, J. D. Rudolf, R. Jedrzejczak, X. Yan, M. Ma, G. Babnigg, A. Joachimiak, G. N. Phillips and B. Shen. Structural Insights into the Free-Standing Condensation Enzyme SgcC5 Catalyzing Ester-Bond Formation in the Biosynthesis of the Enediyne Antitumor Antibiotic C-1027. Biochemistry 57(23), 3278-3288.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Chang, C. Y., J. R. Lohman, T. Huang, K. Michalska, L. Bigelow, J. D. Rudolf, R. Jedrzejczak, X. Yan, M. Ma, G. Babnigg, A. Joachimiak, G. N. Phillips and B. ShenStructural Insights into the Free-Standing Condensation Enzyme SgcC5 Catalyzing Ester-Bond Formation in the Biosynthesis of the Enediyne Antitumor Antibiotic C-1027Biochemistry57(23), 3278-328810.1021/acs.biochem.8b00174
2018Chang, C., B. R. Amer, J. Osipiuk, S. A. McConnell, I. H. Huang, V. Hsieh, J. Fu, H. H. Nguyen, J. Muroski, E. Flores, R. R. O. Loo, J. A. Loo, J. A. Putkey, A. Joachimiak, A. Das, R. T. Clubb and H. Ton-That. In vitro reconstitution of sortase-catalyzed pilus polymerization reveals structural elements involved in pilin cross-linking. Proceedings of the National Academy of Sciences of the United States of America 115(24), E5477-E5486.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Chang, C., B. R. Amer, J. Osipiuk, S. A. McConnell, I. H. Huang, V. Hsieh, J. Fu, H. H. Nguyen, J. Muroski, E. Flores, R. R. O. Loo, J. A. Loo, J. A. Putkey, A. Joachimiak, A. Das, R. T. Clubb and H. Ton-ThatIn vitro reconstitution of sortase-catalyzed pilus polymerization reveals structural elements involved in pilin cross-linkingProceedings of the National Academy of Sciences of the United States of America115(24), E5477-E548610.1073/pnas.1800954115
2018Chang, C.-Y., X. Yan, I. Crnovcic, T. Annaval, C. Chang, B. Nocek, J.D. Rudolf, D. Yang, Hindra, G. Babnigg, A. Joachimiak, G.N. Phillips, and B. Shen. 2018. "Resistance to Enediyne Antitumor Antibiotics by Sequestration," Cell Chemical Biology 25(9) 1075-1085.e1074.Advanced Photon SourceStructural Biology Center X-ray Macromolecular Crystallography (MX)Chang, C.-Y., X. Yan, I. Crnovcic, T. Annaval, C. Chang, B. Nocek, J.D. Rudolf, D. Yang, Hindra, G. Babnigg, A. Joachimiak, G.N. Phillips, and B. ShenResistance to enediyne antitumor antibiotics by sequestrationCell Chemical Biology25(9)1075-1085.e107410.1016/j.chembiol.2018.05.012(feature story) (related highlight)
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2018Chiang, L., E. C. Wasinger, Y. Shimazaki, V. Young, T. Storr and T. D. P. Stack. Electronic structure and reactivity studies of a nonsymmetric one-electron oxidized CuII bis-phenoxide complex. Inorganica Chimica Acta 481, 151-158.Stanford Synchrotron Radiation LightsourceChiang, L., E. C. Wasinger, Y. Shimazaki, V. Young, T. Storr and T. D. P. StackElectronic structure and reactivity studies of a nonsymmetric one-electron oxidized CuII bis-phenoxide complexInorganica Chimica Acta481, 151-15810.1016/j.ica.2017.09.042
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2018Deng, A. and S. G. Boxer. Structural Insight into the Photochemistry of Split Green Fluorescent Proteins: A Unique Role for a His-Tag. Journal of the American Chemical Society 140(1), 375-381.Stanford Synchrotron Radiation LightsourceDeng, A. and S. G. BoxerStructural Insight into the Photochemistry of Split Green Fluorescent Proteins: A Unique Role for a His-TagJournal of the American Chemical Society140(1), 375-38110.1021/jacs.7b10680
2018Dery, S., E. Amit and E. Gross. Identifying Catalytic Reactions on Single Nanoparticles. Topics in Catalysis 61(44450), 923-939.Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramSynchrotron Infrared Hyperspectral ImagingDery, S., E. Amit and E. GrossIdentifying Catalytic Reactions on Single NanoparticlesTopics in Catalysis61(44450), 923-93910.1007/s11244-018-0931-4
2018Dery, S., S. Kim, D. Haddad, A. Cossaro, A. Verdini, L. Floreano, F. D. Toste and E. Gross. Identifying site-dependent reactivity in oxidation reactions on single Pt particles. Chemical Science 9(31), 6523-6531.Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramSynchrotron Infrared Hyperspectral ImagingDery, S., S. Kim, D. Haddad, A. Cossaro, A. Verdini, L. Floreano, F. D. Toste and E. GrossIdentifying site-dependent reactivity in oxidation reactions on single Pt particlesChemical Science9(31), 6523-653110.1039/c8sc01956h
2018Dey, Aniruddha, Alex M. Confer, Avery C. Vilbert, Pierre Moënne‐Loccoz, Kyle M. Lancaster and David P. Goldberg. A Nonheme Sulfur‐Ligated {FeNO} Complex and Comparison with Redox‐Interconvertible {FeNO} and {FeNO} Analogues. Angewandte Chemie 130(41), 13653-13657.Stanford Synchrotron Radiation LightsourceDey, Aniruddha, Alex M. Confer, Avery C. Vilbert, Pierre Moënne‐Loccoz, Kyle M. Lancaster and David P. GoldbergA Nonheme Sulfur‐Ligated {FeNO} Complex and Comparison with Redox‐Interconvertible {FeNO} and {FeNO} AnaloguesAngewandte Chemie130(41), 13653-1365710.1002/ange.201806146
2018Dolgova, N. V., S. Nehzati, S. Choudhury, T. C. MacDonald, N. R. Regnier, A. M. Crawford, O. Ponomarenko, G. N. George and I. J. Pickering. X-ray spectroscopy and imaging of selenium in living systems. Biochimica et Biophysica Acta - General Subjects 1862(11), 2383-2392.Stanford Synchrotron Radiation LightsourceDolgova, N. V., S. Nehzati, S. Choudhury, T. C. MacDonald, N. R. Regnier, A. M. Crawford, O. Ponomarenko, G. N. George and I. J. PickeringX-ray spectroscopy and imaging of selenium in living systemsBiochimica et Biophysica Acta - General Subjects1862(11), 2383-239210.1016/j.bbagen.2018.04.024
2018Dong, C., H. Zhang, L. Li, W. Tempel, P. Loppnau and J. Min. Molecular basis of GID4-mediated recognition of degrons for the Pro/N-end rule pathway article. Nature Chemical Biology 14(5), 466-473.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Dong, C., H. Zhang, L. Li, W. Tempel, P. Loppnau and J. MinMolecular basis of GID4-mediated recognition of degrons for the Pro/N-end rule pathway articleNature Chemical Biology14(5), 466-47310.1038/s41589-018-0036-1
2018Dos Santos, C. R., P. O. De Giuseppe, F. H. M. De Souza, L. M. Zanphorlin, M. N. Domingues, R. A. S. Pirolla, R. V. Honorato, C. C. C. Tonoli, M. A. B. De Morais, V. P. De Matos Martins, L. M. Fonseca, F. Büchli, P. S. L. De Oliveira, F. C. Gozzo and M. T. Murakami. The mechanism by which a distinguishing arabinofuranosidase can cope with internal di-substitutions in arabinoxylans. Biotechnology for Biofuels 11(1).Stanford Synchrotron Radiation LightsourceDos Santos, C. R., P. O. De Giuseppe, F. H. M. De Souza, L. M. Zanphorlin, M. N. Domingues, R. A. S. Pirolla, R. V. Honorato, C. C. C. Tonoli, M. A. B. De Morais, V. P. De Matos Martins, L. M. Fonseca, F. Büchli, P. S. L. De Oliveira, F. C. Gozzo and M. T. MurakamiThe mechanism by which a distinguishing arabinofuranosidase can cope with internal di-substitutions in arabinoxylansBiotechnology for Biofuels11(1), 10.1186/s13068-018-1212-y
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2018Fang, Y., X. Xiao, S. X. Li, A. Wolfe and X. S. Chen. Molecular Interactions of a DNA Modifying Enzyme APOBEC3F Catalytic Domain with a Single-Stranded DNA. Journal of Molecular Biology 430(1), 87-101.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Fang, Y., X. Xiao, S. X. Li, A. Wolfe and X. S. ChenMolecular Interactions of a DNA Modifying Enzyme APOBEC3F Catalytic Domain with a Single-Stranded DNAJournal of Molecular Biology430(1), 87-10110.1016/j.jmb.2017.11.007
2018Fares, H. M., Y. E. Ghoussoub, J. D. Delgado, J. Fu, V. S. Urban and J. B. Schlenoff. Scattering Neutrons along the Polyelectrolyte Complex/Coacervate Continuum. Macromolecules 51(13), 4945-4955.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Fares, H. M., Y. E. Ghoussoub, J. D. Delgado, J. Fu, V. S. Urban and J. B. SchlenoffScattering Neutrons along the Polyelectrolyte Complex/Coacervate ContinuumMacromolecules51(13), 4945-495510.1021/acs.macromol.8b00699
2018Farfan, G. A., A. Apprill, S. M. Webb and C. M. Hansel. Coupled X-ray fluorescence and X-ray absorption spectroscopy for microscale imaging and identification of sulfur species within tissues and skeletons of scleractinian corals. Analytical Chemistry 90(21), 12559-12566.Stanford Synchrotron Radiation LightsourceFarfan, G. A., A. Apprill, S. M. Webb and C. M. HanselCoupled X-ray fluorescence and X-ray absorption spectroscopy for microscale imaging and identification of sulfur species within tissues and skeletons of scleractinian coralsAnalytical Chemistry90(21), 12559-1256610.1021/acs.analchem.8b02638
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2018Fisher, O. S., G. E. Kenney, M. O. Ross, S. Y. Ro, B. E. Lemma, S. Batelu, P. M. Thomas, V. C. Sosnowski, C. J. DeHart, N. L. Kelleher, T. L. Stemmler, B. M. Hoffman and A. C. Rosenzweig. Characterization of a long overlooked copper protein from methane- and ammonia-oxidizing bacteria. Nature Communications 9(1).Stanford Synchrotron Radiation LightsourceFisher, O. S., G. E. Kenney, M. O. Ross, S. Y. Ro, B. E. Lemma, S. Batelu, P. M. Thomas, V. C. Sosnowski, C. J. DeHart, N. L. Kelleher, T. L. Stemmler, B. M. Hoffman and A. C. RosenzweigCharacterization of a long overlooked copper protein from methane- and ammonia-oxidizing bacteriaNature Communications9(1), 10.1038/s41467-018-06681-5
2018Fransson, T., R. Chatterjee, F. D. Fuller, S. Gul, C. Weninger, D. Sokaras, T. Kroll, R. Alonso-Mori, U. Bergmann, J. Kern, V. K. Yachandra and J. Yano. X-ray Emission Spectroscopy as an in Situ Diagnostic Tool for X-ray Crystallography of Metalloproteins Using an X-ray Free-Electron Laser. Biochemistry 57(31), 4629-4637.Stanford Synchrotron Radiation LightsourceFransson, T., R. Chatterjee, F. D. Fuller, S. Gul, C. Weninger, D. Sokaras, T. Kroll, R. Alonso-Mori, U. Bergmann, J. Kern, V. K. Yachandra and J. YanoX-ray Emission Spectroscopy as an in Situ Diagnostic Tool for X-ray Crystallography of Metalloproteins Using an X-ray Free-Electron LaserBiochemistry57(31), 4629-463710.1021/acs.biochem.8b00325
2018Fu, S. C., H. Y. J. Fung, T. Caǧatay, J. Baumhardt and Y. M. Chook. Correlation of CRM1-NES affinity with nuclear export activity. Molecular Biology of the Cell 29(17), 2037-2044.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Fu, S. C., H. Y. J. Fung, T. Caǧatay, J. Baumhardt and Y. M. ChookCorrelation of CRM1-NES affinity with nuclear export activityMolecular Biology of the Cell29(17), 2037-204410.1091/mbc.E18-02-0096
2018Gao, J., Z. Wu, G. Hu, K. Wang, J. Song, A. Joachimiak and L. Kurgan. Survey of predictors of propensity for protein production and crystallization with application to predict resolution of crystal structures. Current Protein and Peptide Science 19(2), 200-210.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Gao, J., Z. Wu, G. Hu, K. Wang, J. Song, A. Joachimiak and L. KurganSurvey of predictors of propensity for protein production and crystallization with application to predict resolution of crystal structuresCurrent Protein and Peptide Science19(2), 200-21010.2174/1389203718666170921114437
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2018Gisewhite, D. R., J. Yang, B. R. Williams, A. Esmail, B. Stein, M. L. Kirk and S. J. N. Burgmayer. Implications of Pyran Cyclization and Pterin Conformation on Oxidized Forms of the Molybdenum Cofactor. Journal of the American Chemical Society 140(40), 12808-12818.Stanford Synchrotron Radiation LightsourceGisewhite, D. R., J. Yang, B. R. Williams, A. Esmail, B. Stein, M. L. Kirk and S. J. N. BurgmayerImplications of Pyran Cyclization and Pterin Conformation on Oxidized Forms of the Molybdenum CofactorJournal of the American Chemical Society140(40), 12808-1281810.1021/jacs.8b05777
2018Glasser, N. R., P. H. Oyala, T. H. Osborne, J. M. Santini and D. K. Newman. Structural and mechanistic analysis of the arsenate respiratory reductase provides insight into environmental arsenic transformations. Proceedings of the National Academy of Sciences of the United States of America 115(37), E8614-E8623.Stanford Synchrotron Radiation LightsourceGlasser, N. R., P. H. Oyala, T. H. Osborne, J. M. Santini and D. K. NewmanStructural and mechanistic analysis of the arsenate respiratory reductase provides insight into environmental arsenic transformationsProceedings of the National Academy of Sciences of the United States of America115(37), E8614-E862310.1073/pnas.1807984115
2018Guo, G., M.R. Fuchs, W. Shi, J. Skinner, E. Berman, C.M. Ogata, W.A. Hendrickson, Q. McSweeney, and S. Liu. (2018) Sample manipulation and data assembly for robust microcrystal synchrotron crystallography. IUCrJ 5(3)238-246.NSLSIICenter for BioMolecular Structure X-ray Macromolecular Crystallography (MX)Guo, G., M.R. Fuchs, W. Shi, J. Skinner, E. Berman, C.M. Ogata, W.A. Hendrickson, Q. McSweeney, and S. LiuSample manipulation and data assembly for robust microcrystal synchrotron crystallographyIUCrJ5(3)238-24610.1107/S2052252518005389(feature story) (related highlight)
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2018Hammond, C. M., R. A. Root, R. M.Maier, and J. Chorover. Mechanisms of arsenic sequestration by Prosopis juliflora during the phytostabilization of metalliferous mine tailings. Environmental Science & Technology 52(3), 1156-1164.SSRLStructural Molecular Biology Resource X-ray Absorption and Emission Spectroscopy (XAS, XES)Hammond, C. M., R. A. Root, R. M.Maier, and J. ChoroverMechanisms of arsenic sequestration by Prosopis juliflora during the phytostabilization of metalliferous mine tailingsEnvironmental Science & Technology52(3), 1156-116410.1021/acs.est.7b04363(related highlight)
2018Hao, Z., H. A. Bechtel, T. Kneafsey, B. Gilbert and P. S. Nico. Cross-Scale Molecular Analysis of Chemical Heterogeneity in Shale Rocks. Scientific Reports 8(1).Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramSynchrotron Infrared Hyperspectral ImagingHao, Z., H. A. Bechtel, T. Kneafsey, B. Gilbert and P. S. NicoCross-Scale Molecular Analysis of Chemical Heterogeneity in Shale RocksScientific Reports8(1), 10.1038/s41598-018-20365-6
2018Hayes, D. G., R. Ye, R. N. Dunlap, D. B. Anunciado, S. V. Pingali, H. M. O'Neill and V. S. Urban. Bicontinuous microemulsions as a biomembrane mimetic system for melittin. Biochimica et Biophysica Acta - Biomembranes 1860(2), 624-632.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Hayes, D. G., R. Ye, R. N. Dunlap, D. B. Anunciado, S. V. Pingali, H. M. O'Neill and V. S. UrbanBicontinuous microemulsions as a biomembrane mimetic system for melittinBiochimica et Biophysica Acta - Biomembranes1860(2), 624-63210.1016/j.bbamem.2017.11.005
2018Hayes, D. G., S. V. Pingali, H. M. O'Neill, V. S. Urban and R. Ye. Observation of a structural gradient in Winsor-III microemulsion systems. Soft Matter 14(25), 5270-5276.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Hayes, D. G., S. V. Pingali, H. M. O'Neill, V. S. Urban and R. YeObservation of a structural gradient in Winsor-III microemulsion systemsSoft Matter14(25), 5270-527610.1039/c8sm00322j
2018Hedges, J. B., E. Kuatsjah, Y. L. Du, L. D. Eltis and K. S. Ryan. Snapshots of the Catalytic Cycle of an O2, Pyridoxal Phosphate-Dependent Hydroxylase. ACS Chemical Biology 13(4), 965-974.Stanford Synchrotron Radiation LightsourceHedges, J. B., E. Kuatsjah, Y. L. Du, L. D. Eltis and K. S. RyanSnapshots of the Catalytic Cycle of an O2, Pyridoxal Phosphate-Dependent HydroxylaseACS Chemical Biology13(4), 965-97410.1021/acschembio.8b00039
2018Helfenstein, J., F. Tamburini, C. von Sperber, M. S. Massey, C. Pistocchi, O. A. Chadwick, P. M. Vitousek, R. Kretzschmar and E. Frossard. Combining spectroscopic and isotopic techniques gives a dynamic view of phosphorus cycling in soil. Nature Communications 9(1).Stanford Synchrotron Radiation LightsourceHelfenstein, J., F. Tamburini, C. von Sperber, M. S. Massey, C. Pistocchi, O. A. Chadwick, P. M. Vitousek, R. Kretzschmar and E. FrossardCombining spectroscopic and isotopic techniques gives a dynamic view of phosphorus cycling in soilNature Communications9(1), 10.1038/s41467-018-05731-2
2018Heller, W. T., M. Cuneo, L. Debeer-Schmitt, C. Do, L. He, L. Heroux, K. Littrell, S. V. Pingali, S. Qian, C. Stanley, V. S. Urban, B. Wu and W. Bras. The suite of small-angle neutron scattering instruments at Oak Ridge National Laboratory. Journal of Applied Crystallography 51(2), 242-248.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Heller, W. T., M. Cuneo, L. Debeer-Schmitt, C. Do, L. He, L. Heroux, K. Littrell, S. V. Pingali, S. Qian, C. Stanley, V. S. Urban, B. Wu and W. BrasThe suite of small-angle neutron scattering instruments at Oak Ridge National LaboratoryJournal of Applied Crystallography51(2), 242-24810.1107/S1600576718001231
2018Hettle, A. G., C. Vickers, C. S. Robb, F. Liu, S. G. Withers, J. H. Hehemann and A. B. Boraston. The Molecular Basis of Polysaccharide Sulfatase Activity and a Nomenclature for Catalytic Subsites in this Class of Enzyme. Structure 26(5), 747-758.e4.Stanford Synchrotron Radiation LightsourceHettle, A. G., C. Vickers, C. S. Robb, F. Liu, S. G. Withers, J. H. Hehemann and A. B. BorastonThe Molecular Basis of Polysaccharide Sulfatase Activity and a Nomenclature for Catalytic Subsites in this Class of EnzymeStructure26(5), 747-758.e410.1016/j.str.2018.03.012
2018Hochstein, R., D. Bollschweiler, S. Dharmavaram, N. G. Lintner, J. M. Plitzko, R. Bruinsma, H. Engelhardt, M. J. Young, W. S. Klug and C. Martin Lawrence. Structural studies of acidianus tailed spindle virus reveal a structural paradigm used in the assembly of spindle-shaped viruses. Proceedings of the National Academy of Sciences of the United States of America 115(9), 2120-2125.Stanford Synchrotron Radiation LightsourceHochstein, R., D. Bollschweiler, S. Dharmavaram, N. G. Lintner, J. M. Plitzko, R. Bruinsma, H. Engelhardt, M. J. Young, W. S. Klug and C. Martin LawrenceStructural studies of acidianus tailed spindle virus reveal a structural paradigm used in the assembly of spindle-shaped virusesProceedings of the National Academy of Sciences of the United States of America115(9), 2120-212510.1073/pnas.1719180115
2018Hogancamp, T. N., M. F. Mabanglo and F. M. Raushel. Structure and Reaction Mechanism of the LigJ Hydratase: An Enzyme Critical for the Bacterial Degradation of Lignin in the Protocatechuate 4,5-Cleavage Pathway. Biochemistry 57(40), 5841-5850.Stanford Synchrotron Radiation LightsourceHogancamp, T. N., M. F. Mabanglo and F. M. RaushelStructure and Reaction Mechanism of the LigJ Hydratase: An Enzyme Critical for the Bacterial Degradation of Lignin in the Protocatechuate 4,5-Cleavage PathwayBiochemistry57(40), 5841-585010.1021/acs.biochem.8b00713
2018Holland, C. K., D. A. Berkovich, M. L. Kohn, H. Maeda and J. M. Jez. Structural basis for substrate recognition and inhibition of prephenate aminotransferase from Arabidopsis. Plant Journal 94(2), 304-314.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Holland, C. K., D. A. Berkovich, M. L. Kohn, H. Maeda and J. M. JezStructural basis for substrate recognition and inhibition of prephenate aminotransferase from ArabidopsisPlant Journal94(2), 304-31410.1111/tpj.13856
2018Hong, S., J. J. Yan, D. G. Karmalkar, K. D. Sutherlin, J. Kim, Y. M. Lee, Y. Goo, P. K. Mascharak, B. Hedman, K. O. Hodgson, K. D. Karlin, E. I. Solomon and W. Nam. A mononuclear nonheme {FeNO}6 complex: Synthesis and structural and spectroscopic characterization. Chemical Science 9(34), 6952-6960.Stanford Synchrotron Radiation LightsourceHong, S., J. J. Yan, D. G. Karmalkar, K. D. Sutherlin, J. Kim, Y. M. Lee, Y. Goo, P. K. Mascharak, B. Hedman, K. O. Hodgson, K. D. Karlin, E. I. Solomon and W. NamA mononuclear nonheme {FeNO}6 complex: Synthesis and structural and spectroscopic characterizationChemical Science9(34), 6952-696010.1039/c8sc01962b
2018Hou, J., H. Zheng, W. S. Tzou, D. R. Cooper, M. Chruszcz, M. D. Chordia, K. Kwon, M. Grabowski and W. Minor. Differences in substrate specificity of V. cholerae FabH enzymes suggest new approaches for the development of novel antibiotics and biofuels. FEBS Journal 285(15), 2900-2921.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Hou, J., H. Zheng, W. S. Tzou, D. R. Cooper, M. Chruszcz, M. D. Chordia, K. Kwon, M. Grabowski and W. MinorDifferences in substrate specificity of V. cholerae FabH enzymes suggest new approaches for the development of novel antibiotics and biofuelsFEBS Journal285(15), 2900-292110.1111/febs.14588
2018Huang, R., B. Wan, M. Hultz, J. M. Diaz and Y. Tang. Phosphatase-Mediated Hydrolysis of Linear Polyphosphates. Environmental Science & Technology 52(3), 1183-1190.Stanford Synchrotron Radiation LightsourceHuang, R., B. Wan, M. Hultz, J. M. Diaz and Y. TangPhosphatase-Mediated Hydrolysis of Linear PolyphosphatesEnvironmental Science & Technology52(3), 1183-119010.1021/acs.est.7b04553
2018Huang, R., C. Fang, B. Zhang and Y. Tang. Transformations of Phosphorus Speciation during (Hydro), thermal Treatments of Animal Manures. Environmental Science & Technology 52(5), 3016-3026.Stanford Synchrotron Radiation LightsourceHuang, R., C. Fang, B. Zhang and Y. TangTransformations of Phosphorus Speciation during (Hydro), thermal Treatments of Animal ManuresEnvironmental Science & Technology52(5), 3016-302610.1021/acs.est.7b05203
2018Huskey, D. A., G. Curlango-Rivera, R. A. Root, F. Wen, M. K. Amistadi, J. Chorover and M. C. Hawes. Trapping of lead (Pb), by corn and pea root border cells. Plant and Soil 430(44198), 205-217.Stanford Synchrotron Radiation LightsourceHuskey, D. A., G. Curlango-Rivera, R. A. Root, F. Wen, M. K. Amistadi, J. Chorover and M. C. HawesTrapping of lead (Pb), by corn and pea root border cellsPlant and Soil430(44198), 205-21710.1007/s11104-018-3716-4
2018Ishii, H. A., J. P. Bradley, H. A. Bechtel, D. E. Brownlee, K. C. Bustillo, J. Ciston, J. N. Cuzzi, C. Floss and D. J. Joswiak. Multiple generations of grain aggregation in different environments preceded solar system body formation. Proceedings of the National Academy of Sciences of the United States of America 115(26), 6608-6613.Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramSynchrotron Infrared Hyperspectral ImagingIshii, H. A., J. P. Bradley, H. A. Bechtel, D. E. Brownlee, K. C. Bustillo, J. Ciston, J. N. Cuzzi, C. Floss and D. J. JoswiakMultiple generations of grain aggregation in different environments preceded solar system body formationProceedings of the National Academy of Sciences of the United States of America115(26), 6608-661310.1073/pnas.1720167115
2018Jakobsson, M. E., J. M. Małecki, L. Halabelian, B. S. Nilges, R. Pinto, S. Kudithipudi, S. Munk, E. Davydova, F. R. Zuhairi, C. H. Arrowsmith, A. Jeltsch, S. A. Leidel, J. V. Olsen and P. Ø Falnes. The dual methyltransferase METTL13 targets N terminus and Lys55 of eEF1A and modulates codon-specific translation rates. Nature Communications 9(1).Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Jakobsson, M. E., J. M. Małecki, L. Halabelian, B. S. Nilges, R. Pinto, S. Kudithipudi, S. Munk, E. Davydova, F. R. Zuhairi, C. H. Arrowsmith, A. Jeltsch, S. A. Leidel, J. V. Olsen and P. Ø FalnesThe dual methyltransferase METTL13 targets N terminus and Lys55 of eEF1A and modulates codon-specific translation ratesNature Communications9(1), 10.1038/s41467-018-05646-y
2018Jennings, G. K., M. H. Hsu, L. S. Shock, E. F. Johnson and J. C. Hackett. Noncovalent interactions dominate dynamic heme distortion in cytochrome P450 4B1. Journal of Biological Chemistry 293(29), 11433-11446.Stanford Synchrotron Radiation LightsourceJennings, G. K., M. H. Hsu, L. S. Shock, E. F. Johnson and J. C. HackettNoncovalent interactions dominate dynamic heme distortion in cytochrome P450 4B1Journal of Biological Chemistry293(29), 11433-1144610.1074/jbc.RA118.004044
2018Jensen, M. R., B. R. Goblirsch, M. A. Esler, J. K. Christenson, F. A. Mohamed, L. P. Wackett and C. M. Wilmot. The role of OleA His285 in orchestration of long-chain acyl-coenzyme A substrates. FEBS Letters 592(6), 987-998.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Jensen, M. R., B. R. Goblirsch, M. A. Esler, J. K. Christenson, F. A. Mohamed, L. P. Wackett and C. M. WilmotThe role of OleA His285 in orchestration of long-chain acyl-coenzyme A substratesFEBS Letters592(6), 987-99810.1002/1873-3468.13004
2018Johnson, B., L. A. VanBlargan, W. Xu, J. P. White, C. Shan, P. Y. Shi, R. Zhang, J. Adhikari, M. L. Gross, D. W. Leung, M. S. Diamond and G. K. Amarasinghe. Human IFIT3 Modulates IFIT1 RNA Binding Specificity and Protein Stability. Immunity 48(3), 487-499.e5.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Johnson, B., L. A. VanBlargan, W. Xu, J. P. White, C. Shan, P. Y. Shi, R. Zhang, J. Adhikari, M. L. Gross, D. W. Leung, M. S. Diamond and G. K. AmarasingheHuman IFIT3 Modulates IFIT1 RNA Binding Specificity and Protein StabilityImmunity48(3), 487-499.e510.1016/j.immuni.2018.01.014
2018Kamennaya, N. A., M. Zemla, L. Mahoney, L. Chen, E. Holman, H. Y. Holman, M. Auer, C. M. Ajo-Franklin and C. Jansson. High pCO2-induced exopolysaccharide-rich ballasted aggregates of planktonic cyanobacteria could explain Paleoproterozoic carbon burial. Nature Communications 9(1).Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramKamennaya, N. A., M. Zemla, L. Mahoney, L. Chen, E. Holman, H. Y. Holman, M. Auer, C. M. Ajo-Franklin and C. JanssonHigh pCO2-induced exopolysaccharide-rich ballasted aggregates of planktonic cyanobacteria could explain Paleoproterozoic carbon burialNature Communications9(1), 10.1038/s41467-018-04588-9
2018Kasiuliene, A., I. Carabante, P. Bhattacharya, A. G. Caporale, P. Adamo and J. Kumpiene. Removal of metal(oid), s from contaminated water using iron-coated peat sorbent. Chemosphere 198, 290-296.Stanford Synchrotron Radiation LightsourceKasiuliene, A., I. Carabante, P. Bhattacharya, A. G. Caporale, P. Adamo and J. KumpieneRemoval of metal(oid), s from contaminated water using iron-coated peat sorbentChemosphere198(), 290-29610.1016/j.chemosphere.2018.01.139
2018Keable, S. M., J. Vertemara, O. A. Zadvornyy, B. J. Eilers, K. Danyal, A. J. Rasmussen, L. De Gioia, G. Zampella, L. C. Seefeldt and J. W. Peters. Structural characterization of the nitrogenase molybdenum-iron protein with the substrate acetylene trapped near the active site. Journal of Inorganic Biochemistry 180, 129-134.SSRLStructural Molecular Biology ResourceX-ray Macromolecular Crystallography (MX)Keable, S. M., J. Vertemara, O. A. Zadvornyy, B. J. Eilers, K. Danyal, A. J. Rasmussen, L. De Gioia, G. Zampella, L. C. Seefeldt and J. W. PetersStructural characterization of the nitrogenase molybdenum-iron protein with the substrate acetylene trapped near the active siteJournal of Inorganic Biochemistry180(), 129-13410.1016/j.jinorgbio.2017.12.008(related highlight)
2018Keable, S. M., O. A. Zadvornyy, L. E. Johnson, B. Ginovska, A. J. Rasmussen, K. Danyal, B. J. Eilers, G. A. Prussia, A. X. LeVan, S. Raugei, L. C. Seefeldt and J. W. Peters. Structural characterization of the P1 intermediate state of the P-cluster of nitrogenase. Journal of Biological Chemistry 293(25), 9629-9635.Stanford Synchrotron Radiation LightsourceKeable, S. M., O. A. Zadvornyy, L. E. Johnson, B. Ginovska, A. J. Rasmussen, K. Danyal, B. J. Eilers, G. A. Prussia, A. X. LeVan, S. Raugei, L. C. Seefeldt and J. W. PetersStructural characterization of the P1 intermediate state of the P-cluster of nitrogenaseJournal of Biological Chemistry293(25), 9629-963510.1074/jbc.RA118.002435
2018Khandelwal, A., C.N. Kent, M. Balch, S. Peng, S.J. Mishra, J. Deng, V.W. Day, W. Liu, C. Subramanian, M. Cohen, J.M. Holzbeierlein, R. Matts, and B.S.J. Blagg. Structure-guided design of an Hsp90â N-terminal  isoform-selective inhibitor. Nature Communications 9(1)425.APSStructural Biology Center X-ray Macromolecular Crystallography (MX)Khandelwal, A., C.N. Kent, M. Balch, S. Peng, S.J. Mishra, J. Deng, V.W. Day, W. Liu, C. Subramanian, M. Cohen, J.M. Holzbeierlein, R. Matts, and B.S.J. BlaggStructure-guided design of an Hsp90â N-terminal isoform-selective inhibitorNature Communications9(1)42510.1038/s41467-017-02013-1
2018Khatib, O., H. A. Bechtel, M. C. Martin, M. B. Raschke and G. L. Carr. Far Infrared Synchrotron Near-Field Nanoimaging and Nanospectroscopy. ACS Photonics 5(7), 2773-2779.Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramSynchrotron Infrared Hyperspectral ImagingKhatib, O., H. A. Bechtel, M. C. Martin, M. B. Raschke and G. L. CarrFar Infrared Synchrotron Near-Field Nanoimaging and NanospectroscopyACS Photonics5(7), 2773-277910.1021/acsphotonics.8b00565
2018Kim, S. J., J. Fernandez-Martinez, I. Nudelman, Y. Shi, W. Zhang, B. Raveh, T. Herricks, B. D. Slaughter, J. A. Hogan, P. Upla, I. E. Chemmama, R. Pellarin, I. Echeverria, M. Shivaraju, A. S. Chaudhury, J. Wang, R. Williams, J. R. Unruh, C. H. Greenberg, E. Y. Jacobs, Z. Yu, M. J. De La Cruz, R. Mironska, D. L. Stokes, J. D. Aitchison, M. F. Jarrold, J. L. Gerton, S. J. Ludtke, C. W. Akey, B. T. Chait, A. Sali and M. P. Rout. Integrative structure and functional anatomy of a nuclear pore complex. Nature 555(7697), 475-482.Stanford Synchrotron Radiation LightsourceKim, S. J., J. Fernandez-Martinez, I. Nudelman, Y. Shi, W. Zhang, B. Raveh, T. Herricks, B. D. Slaughter, J. A. Hogan, P. Upla, I. E. Chemmama, R. Pellarin, I. Echeverria, M. Shivaraju, A. S. Chaudhury, J. Wang, R. Williams, J. R. Unruh, C. H. Greenberg, E. Y. Jacobs, Z. Yu, M. J. De La Cruz, R. Mironska, D. L. Stokes, J. D. Aitchison, M. F. Jarrold, J. L. Gerton, S. J. Ludtke, C. W. Akey, B. T. Chait, A. Sali and M. P. RoutIntegrative structure and functional anatomy of a nuclear pore complexNature555(7697), 475-48210.1038/nature26003
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2018Koebke, K. J. and V. L. Pecoraro. Development of de Novo Copper Nitrite Reductases: Where We Are and Where We Need to Go. ACS Catalysis 8(9), 8046-8057.Stanford Synchrotron Radiation LightsourceKoebke, K. J. and V. L. PecoraroDevelopment of de Novo Copper Nitrite Reductases: Where We Are and Where We Need to GoACS Catalysis8(9), 8046-805710.1021/acscatal.8b02153
2018Koebke, K. J., L. Ruckthong, J. L. Meagher, E. Mathieu, J. Harland, A. Deb, N. Lehnert, C. Policar, C. Tard, J. E. Penner-Hahn, J. A. Stuckey and V. L. Pecoraro. Clarifying the Copper Coordination Environment in a de Novo Designed Red Copper Protein. Inorganic Chemistry 57(19), 12291-12302.Stanford Synchrotron Radiation LightsourceKoebke, K. J., L. Ruckthong, J. L. Meagher, E. Mathieu, J. Harland, A. Deb, N. Lehnert, C. Policar, C. Tard, J. E. Penner-Hahn, J. A. Stuckey and V. L. PecoraroClarifying the Copper Coordination Environment in a de Novo Designed Red Copper ProteinInorganic Chemistry57(19), 12291-1230210.1021/acs.inorgchem.8b01989
2018Kopittke, P. M., T. Punshon, D. J. Paterson, R. V. Tappero, P. Wang, F. Pax C. Blamey, A. van der Ent and E. Lombi. Synchrotron-based X-ray fluorescence microscopy as a technique for imaging of elements in plants1[OPEN]. Plant Physiology 178(2), 507-523.National Synchrotron Light Source IIKopittke, P. M., T. Punshon, D. J. Paterson, R. V. Tappero, P. Wang, F. Pax C. Blamey, A. van der Ent and E. LombiSynchrotron-based X-ray fluorescence microscopy as a technique for imaging of elements in plants1[OPEN]Plant Physiology178(2), 507-52310.1104/PP.18.00759
2018Koralek, J. D., J. B. Kim, P. Brůža, C. B. Curry, Z. Chen, H. A. Bechtel, A. A. Cordones, P. Sperling, S. Toleikis, J. F. Kern, S. P. Moeller, S. H. Glenzer and D. P. DePonte. Generation and characterization of ultrathin free-flowing liquid sheets. Nature Communications 9(1).Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramSynchrotron Infrared Hyperspectral ImagingKoralek, J. D., J. B. Kim, P. Brůža, C. B. Curry, Z. Chen, H. A. Bechtel, A. A. Cordones, P. Sperling, S. Toleikis, J. F. Kern, S. P. Moeller, S. H. Glenzer and D. P. DePonteGeneration and characterization of ultrathin free-flowing liquid sheetsNature Communications9(1), 10.1038/s41467-018-03696-w
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2018Kuatsjah, E., A. C. K. Chan, T. E. Hurst, V. Snieckus, M. E. P. Murphy and L. D. Eltis. Metal- and Serine-Dependent Meta-Cleavage Product Hydrolases Utilize Similar Nucleophile-Activation Strategies. ACS Catalysis 8(12), 11622-11632.Stanford Synchrotron Radiation LightsourceKuatsjah, E., A. C. K. Chan, T. E. Hurst, V. Snieckus, M. E. P. Murphy and L. D. EltisMetal- and Serine-Dependent Meta-Cleavage Product Hydrolases Utilize Similar Nucleophile-Activation StrategiesACS Catalysis8(12), 11622-1163210.1021/acscatal.8b02955
2018Kubin, M., M. Guo, T. Kroll, H. Löchel, E. Källman, M. L. Baker, R. Mitzner, S. Gul, J. Kern, A. Föhlisch, A. Erko, U. Bergmann, V. Yachandra, J. Yano, M. Lundberg and P. Wernet. Probing the oxidation state of transition metal complexes: a case study on how charge and spin densities determine Mn L-edge X-ray absorption energies. Chemical Science 9(33), 6813-6829.Stanford Synchrotron Radiation LightsourceKubin, M., M. Guo, T. Kroll, H. Löchel, E. Källman, M. L. Baker, R. Mitzner, S. Gul, J. Kern, A. Föhlisch, A. Erko, U. Bergmann, V. Yachandra, J. Yano, M. Lundberg and P. WernetProbing the oxidation state of transition metal complexes: a case study on how charge and spin densities determine Mn L-edge X-ray absorption energiesChemical Science9(33), 6813-682910.1039/c8sc00550h
2018Kuo, Y. C., X. He, A. J. Coleman, Y. J. Chen, P. Dasari, J. Liou, T. Biederer and X. Zhang. Structural analyses of FERM domain-mediated membrane localization of FARP1. Scientific Reports 8(1).Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Kuo, Y. C., X. He, A. J. Coleman, Y. J. Chen, P. Dasari, J. Liou, T. Biederer and X. ZhangStructural analyses of FERM domain-mediated membrane localization of FARP1Scientific Reports8(1), 10.1038/s41598-018-28692-4
2018Kutner, J., I. G. Shabalin, D. Matelska, K. B. Handing, O. Gasiorowska, P. Sroka, M. W. Gorna, K. Ginalski, K. Wozniak and W. Minor. Structural, Biochemical, and Evolutionary Characterizations of Glyoxylate/Hydroxypyruvate Reductases Show Their Division into Two Distinct Subfamilies. Biochemistry 57(6), 963-977.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Kutner, J., I. G. Shabalin, D. Matelska, K. B. Handing, O. Gasiorowska, P. Sroka, M. W. Gorna, K. Ginalski, K. Wozniak and W. MinorStructural, Biochemical, and Evolutionary Characterizations of Glyoxylate/Hydroxypyruvate Reductases Show Their Division into Two Distinct SubfamiliesBiochemistry57(6), 963-97710.1021/acs.biochem.7b01137
2018Labandera, A. M., R. Glen Uhrig, K. Colville, G. B. Moorhead and K. K. S. Ng. Structural basis for the preference of the Arabidopsis thaliana phosphatase RLPH2 for tyrosine-phosphorylated substrates. Science Signaling 11(524).Stanford Synchrotron Radiation LightsourceLabandera, A. M., R. Glen Uhrig, K. Colville, G. B. Moorhead and K. K. S. NgStructural basis for the preference of the Arabidopsis thaliana phosphatase RLPH2 for tyrosine-phosphorylated substratesScience Signaling11(524), 10.1126/scisignal.aan8804
2018Lee, H. B., A. A. Shiau, P. H. Oyala, D. A. Marchiori, S. Gul, R. Chatterjee, J. Yano, R. D. Britt and T. Agapie. Tetranuclear [MnIIIMn3IVO4 ] Complexes as Spectroscopic Models of the S 2 State of the Oxygen Evolving Complex in Photosystem II. Journal of the American Chemical Society 140(49), 17175-17187.Stanford Synchrotron Radiation LightsourceLee, H. B., A. A. Shiau, P. H. Oyala, D. A. Marchiori, S. Gul, R. Chatterjee, J. Yano, R. D. Britt and T. AgapieTetranuclear [MnIIIMn3IVO4 ] Complexes as Spectroscopic Models of the S 2 State of the Oxygen Evolving Complex in Photosystem IIJournal of the American Chemical Society140(49), 17175-1718710.1021/jacs.8b09961
2018Lee, S., J. Choi, J. Mohanty, L.P. Sousa, F. Tome, E. Pardon, J. Steyaert, M.A. Lemmon, I. Lax, and J. Schlessinger. Structures of beta-klotho reveal a 'zip code'-like mechanism for endocrine FGF signaling. Nature 553(7689) 501-505.SSRLStructural Molecular Biology ResourceX-ray Macromolecular Crystallography (MX)Lee, S., J. Choi, J. Mohanty, L.P. Sousa, F. Tome, E. Pardon, J. Steyaert, M.A. Lemmon, I. Lax, and J. SchlessingerStructures of beta-klotho reveal a 'zip code'-like mechanism for endocrine FGF signalingNature553(7689)501-50510.1038/nature25010(related highlight)
2018Lewis, R. D., M. Garcia-Borràs, M. J. Chalkley, A. R. Buller, K. N. Houk, S. B. Jennifer Kan and F. H. Arnold. Catalytic iron-carbene intermediate revealed in a cytochrome c carbene transferase. Proceedings of the National Academy of Sciences of the United States of America 115(28), 7308-7313.Stanford Synchrotron Radiation LightsourceLewis, R. D., M. Garcia-Borràs, M. J. Chalkley, A. R. Buller, K. N. Houk, S. B. Jennifer Kan and F. H. ArnoldCatalytic iron-carbene intermediate revealed in a cytochrome c carbene transferaseProceedings of the National Academy of Sciences of the United States of America115(28), 7308-731310.1073/pnas.1807027115
2018Li, J., W. P. Griffith, I. Davis, I. Shin, J. Wang, F. Li, Y. Wang, D. J. Wherritt and A. Liu. Cleavage of a carbon–fluorine bond by an engineered cysteine dioxygenase. Nature Chemical Biology 14(9), 853-860.Advanced Photon Source, Stanford Synchrotron Radiation LightsourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Li, J., W. P. Griffith, I. Davis, I. Shin, J. Wang, F. Li, Y. Wang, D. J. Wherritt and A. LiuCleavage of a carbon–fluorine bond by an engineered cysteine dioxygenaseNature Chemical Biology14(9), 853-86010.1038/s41589-018-0085-5
2018Limmer, M. A., J. Mann, D. C. Amaral, R. Vargas and A. L. Seyfferth. Silicon-rich amendments in rice paddies: Effects on arsenic uptake and biogeochemistry. Science of the Total Environment 624(), 1360-1368.Stanford Synchrotron Radiation LightsourceLimmer, M. A., J. Mann, D. C. Amaral, R. Vargas and A. L. SeyfferthSilicon-rich amendments in rice paddies: Effects on arsenic uptake and biogeochemistryScience of the Total Environment624(), 1360-136810.1016/j.scitotenv.2017.12.207
2018Lin, D.H., A. R. Correia, S. W. Cai, F. M. Huber, C. A. Jette, and A. Hoelz. 2018. "Structural and Functional Analysis of mRNA Export Regulation by the Nuclear Pore Complex," Nature Communications 9, 2319.National Synchrotron Light Source IICenter for BioMolecular StructureX-ray Macromolecular Crystallography (MX)D. H. Lin, A. R. Correia, S. W. Cai, F. M. Huber, C. A. Jette, A. Hoelz. Structural and functional analysis of mRNA export regulation by the nuclear pore complex.Nature Commun9, 231910.1038/s41467-018-04459-3(feature story) (related highlight)
2018Liu, K., C. Xu, M. Lei, A. Yang, P. Loppnau, T. R. Hughes and J. Min. Structural basis for the ability of MBD domains to bind methyl-CG and TG sites in DNA. Journal of Biological Chemistry 293(19), 7344-7354.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Liu, K., C. Xu, M. Lei, A. Yang, P. Loppnau, T. R. Hughes and J. MinStructural basis for the ability of MBD domains to bind methyl-CG and TG sites in DNAJournal of Biological Chemistry293(19), 7344-735410.1074/jbc.RA118.001785
2018Liu, Y., E. Holmstrom, P. Yu, K. Tan, X. Zuo, D. J. Nesbitt, R. Sousa, J. R. Stagno and Y. X. Wang. Incorporation of isotopic, fluorescent, and heavy-atom-modified nucleotides into RNAs by position-selective labeling of RNA. Nature Protocols 13(5), 987-1005.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Liu, Y., E. Holmstrom, P. Yu, K. Tan, X. Zuo, D. J. Nesbitt, R. Sousa, J. R. Stagno and Y. X. WangIncorporation of isotopic, fluorescent, and heavy-atom-modified nucleotides into RNAs by position-selective labeling of RNANature Protocols13(5), 987-100510.1038/nprot.2018.002
2018Lopez, A., S. C. Silva, S. Webb, D. Hesterberg, and D. B. Buchwalter. Periphyton and abiotic factors influencing arsenic speciation in aquatic environments. Environmental Toxicology and Chemistry 37(3), 903-913.SSRLStructural Molecular Biology Resource X-ray ImagingLopez, A., S. C. Silva, S. Webb, D. Hesterberg, and D. B. BuchwalterPeriphyton and abiotic factors influencing arsenic speciation in aquatic environmentsEnvironmental Toxicology and Chemistry37(3), 903-91310.1002/etc.4025(related highlight)
2018Lu, Xiaowei, Omar Khatib, Xutao Du, Jiahua Duan, Wei Wei, Xianli Liu, Hans A. Bechtel, Fausto D'Apuzzo, Mingtao Yan, Alexander Buyanin, Qiang Fu, Jianing Chen, Miquel Salmeron, Jie Zeng, Markus B. Raschke, Peng Jiang and Xinhe Bao. Nanoimaging of Electronic Heterogeneity in Bi2Se3 and Sb2Te3 Nanocrystals. Advanced Electronic Materials 4(1), 1700377.Advanced Light SourceSynchrotron Infrared Hyperspectral ImagingvLu, Xiaowei, Omar Khatib, Xutao Du, Jiahua Duan, Wei Wei, Xianli Liu, Hans A. Bechtel, Fausto D'Apuzzo, Mingtao Yan, Alexander Buyanin, Qiang Fu, Jianing Chen, Miquel Salmeron, Jie Zeng, Markus B. Raschke, Peng Jiang and Xinhe BaoNanoimaging of Electronic Heterogeneity in Bi2Se3 and Sb2Te3 NanocrystalsAdvanced Electronic Materials4(1), 170037710.1002/aelm.201700377
2018Luan, Q., S. L. Liu, L. A. Helgeson and B. J. Nolen. Structure of the nucleation-promoting factor SPIN90 bound to the actin filament nucleator Arp2/3 complex. EMBO Journal 37(22).Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Luan, Q., S. L. Liu, L. A. Helgeson and B. J. NolenStructure of the nucleation-promoting factor SPIN90 bound to the actin filament nucleator Arp2/3 complexEMBO Journal37(22), 10.15252/embj.2018100005
2018Luong, T. T., R. Tirgar, M. E. Reardon-Robinson, A. Joachimiak, J. Osipiuk and H. Ton-That. Structural basis of a thiol-disulfide oxidoreductase in the hedgehog-forming actinobacterium Corynebacterium matruchotii. Journal of Bacteriology 200(9).Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Luong, T. T., R. Tirgar, M. E. Reardon-Robinson, A. Joachimiak, J. Osipiuk and H. Ton-ThatStructural basis of a thiol-disulfide oxidoreductase in the hedgehog-forming actinobacterium Corynebacterium matruchotiiJournal of Bacteriology200(9), 10.1128/JB.00783-17
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2018Ma, Chi, Oliver Tschauner, John R. Beckett, George R. Rossman, Clemens Prescher, Vitali B. Prakapenka, Hans A. Bechtel and Alastair MacDowell. Liebermannite, KAlSi3O8, a new shock-metamorphic, high-pressure mineral from the Zagami Martian meteorite. Meteoritics & Planetary Science 53(1), 50-61.Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramSynchrotron Infrared Hyperspectral ImagingMa, Chi, Oliver Tschauner, John R. Beckett, George R. Rossman, Clemens Prescher, Vitali B. Prakapenka, Hans A. Bechtel and Alastair MacDowellLiebermannite, KAlSi3O8, a new shock-metamorphic, high-pressure mineral from the Zagami Martian meteoriteMeteoritics & Planetary Science53(1), 50-6110.1111/maps.13000
2018Magherusan, A. M., A. Zhou, E. R. Farquhar, M. García-Melchor, B. Twamley, L. Que and A. R. McDonald. Mimicking Class I b Mn2-Ribonucleotide Reductase: A MnII2 Complex and Its Reaction with Superoxide. Angewandte Chemie - International Edition 57(4), 918-922.Stanford Synchrotron Radiation LightsourceMagherusan, A. M., A. Zhou, E. R. Farquhar, M. García-Melchor, B. Twamley, L. Que and A. R. McDonaldMimicking Class I b Mn2-Ribonucleotide Reductase: A MnII2 Complex and Its Reaction with SuperoxideAngewandte Chemie - International Edition57(4), 918-92210.1002/anie.201709806
2018Majumdar, S., T. Kim, Z. Chen, S. Munyoki, S. C. Tso, C. A. Brautigam and L. M. Rice. An isolated CLASP TOG domain suppresses microtubule catastrophe and promotes rescue. Molecular Biology of the Cell 29(11), 1359-1375.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Majumdar, S., T. Kim, Z. Chen, S. Munyoki, S. C. Tso, C. A. Brautigam and L. M. RiceAn isolated CLASP TOG domain suppresses microtubule catastrophe and promotes rescueMolecular Biology of the Cell29(11), 1359-137510.1091/mbc.E17-12-0748
2018Marquardt, D., M. D. Frontzek, Y. Zhao, B. C. Chakoumakos and J. Katsaras. Neutron diffraction from aligned stacks of lipid bilayers using the WAND instrument. Journal of Applied Crystallography 51(2), 235-241.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Marquardt, D., M. D. Frontzek, Y. Zhao, B. C. Chakoumakos and J. KatsarasNeutron diffraction from aligned stacks of lipid bilayers using the WAND instrumentJournal of Applied Crystallography51(2), 235-24110.1107/S1600576718001243
2018Massey, M. S., I. Zohar, J. A. Ippolito and M. I. Litaor. Phosphorus sorption to aluminum-based water treatment residuals reacted with dairy wastewater: 2. X-ray absorption spectroscopy. Journal of Environmental Quality 47(3), 546-553.Stanford Synchrotron Radiation LightsourceMassey, M. S., I. Zohar, J. A. Ippolito and M. I. LitaorPhosphorus sorption to aluminum-based water treatment residuals reacted with dairy wastewater: 2. X-ray absorption spectroscopyJournal of Environmental Quality47(3), 546-55310.2134/jeq2017.10.0407
2018Mehta, A. P., L. Supekova, J. H. Chen, K. Pestonjamasp, P. Webster, Y. Ko, S. C. Henderson, G. McDermott, F. Supek and P. G. Schultz. Engineering yeast endosymbionts as a step toward the evolution of mitochondria. Proceedings of the National Academy of Sciences of the United States of America 115(46), 11796-11801.Advanced Light SourceNational Center for X-Ray Tomography Soft X-ray TomographyMehta, A. P., L. Supekova, J. H. Chen, K. Pestonjamasp, P. Webster, Y. Ko, S. C. Henderson, G. McDermott, F. Supek and P. G. SchultzEngineering yeast endosymbionts as a step toward the evolution of mitochondriaProceedings of the National Academy of Sciences of the United States of America115(46), 11796-1180110.1073/pnas.1813143115
2018Meredith, L. K., K. Boye, C. Youngerman, M. Whelan, J. Ogée, J. Sauze and L. Wingate. Coupled biological and abiotic mechanisms driving carbonyl sulfide production in soils. Soil Systems 2(3), 44223.Stanford Synchrotron Radiation LightsourceMeredith, L. K., K. Boye, C. Youngerman, M. Whelan, J. Ogée, J. Sauze and L. WingateCoupled biological and abiotic mechanisms driving carbonyl sulfide production in soilsSoil Systems2(3), 4422310.3390/soilsystems2030037
2018Mirts, E. N., I. D. Petrik, P. Hosseinzadeh, M. J. Nilges and Y. Lu. A designed heme-[4Fe-4S] metalloenzyme catalyzes sulfite reduction like the native enzyme. Science 361(6407), 1098-1101.Stanford Synchrotron Radiation LightsourceMirts, E. N., I. D. Petrik, P. Hosseinzadeh, M. J. Nilges and Y. LuA designed heme-[4Fe-4S] metalloenzyme catalyzes sulfite reduction like the native enzymeScience361(6407), 1098-110110.1126/science.aat8474
2018Morales, Y., K. J. Olsen, J. M. Bulcher and S. J. Johnson. Structure of frequency-interacting RNA helicase from Neurospora crassa reveals high flexibility in a domain critical for circadian rhythm and RNA surveillance. PLoS ONE 13(5).Stanford Synchrotron Radiation LightsourceMorales, Y., K. J. Olsen, J. M. Bulcher and S. J. JohnsonStructure of frequency-interacting RNA helicase from Neurospora crassa reveals high flexibility in a domain critical for circadian rhythm and RNA surveillancePLoS ONE13(5), 10.1371/journal.pone.0196642
2018Moss, F. R., S. R. Shuken, J. A. M. Mercer, C. M. Cohen, T. M. Weiss, S. G. Boxer and N. Z. Burns. Ladderane phospholipids form a densely packed membrane with normal hydrazine and anomalously low proton/hydroxide permeability. Proceedings of the National Academy of Sciences of the United States of America 115(37), 9098-9103.Stanford Synchrotron Radiation LightsourceMoss, F. R., S. R. Shuken, J. A. M. Mercer, C. M. Cohen, T. M. Weiss, S. G. Boxer and N. Z. BurnsLadderane phospholipids form a densely packed membrane with normal hydrazine and anomalously low proton/hydroxide permeabilityProceedings of the National Academy of Sciences of the United States of America115(37), 9098-910310.1073/pnas.1810706115
2018Naing, S. H., R. C. Oliver, K. L. Weiss, V. S. Urban and R. L. Lieberman. Solution structure of an intramembrane aspartyl protease via small angle neutron scattering. Biophysical Journal 114(3), 602-608.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Naing, S. H., R. C. Oliver, K. L. Weiss, V. S. Urban and R. L. LiebermanSolution structure of an intramembrane aspartyl protease via small angle neutron scatteringBiophysical Journal114(3), 602-60810.1016/j.bpj.2017.12.017
2018Nazaretski, E., W. Xu, H. Yan, X. Huang, D. S. Coburn, M. Ge, W. K. Lee, Y. Gao, W. Xu, M. R. Fuchs and Y. S. Chu. Microscopy Instrumentation and Nanopositioning at NSLS-II: Current Status and Future Directions. Synchrotron Radiation News 31(5), 44263.National Synchrotron Light Source IICenter for BioMolecular StructureX-ray Macromolecular Crystallography (MX)Nazaretski, E., W. Xu, H. Yan, X. Huang, D. S. Coburn, M. Ge, W. K. Lee, Y. Gao, W. Xu, M. R. Fuchs and Y. S. ChuMicroscopy Instrumentation and Nanopositioning at NSLS-II: Current Status and Future DirectionsSynchrotron Radiation News31(5), 4426310.1080/08940886.2018.1506233
2018Nehzati, S., N. V. Dolgova, D. Sokaras, T. Kroll, J. J. H. Cotelesage, I. J. Pickering and G. N. George. A Photochemically Generated Selenyl Free Radical Observed by High Energy Resolution Fluorescence Detected X-ray Absorption Spectroscopy. Inorganic chemistry 57(17), 10867-10872.Stanford Synchrotron Radiation LightsourceNehzati, S., N. V. Dolgova, D. Sokaras, T. Kroll, J. J. H. Cotelesage, I. J. Pickering and G. N. GeorgeA Photochemically Generated Selenyl Free Radical Observed by High Energy Resolution Fluorescence Detected X-ray Absorption SpectroscopyInorganic chemistry57(17), 10867-1087210.1021/acs.inorgchem.8b01522
2018Nielsen, J. E., V. A. Bjørnestad and R. Lund. Resolving the structural interactions between antimicrobial peptides and lipid membranes using small-angle scattering methods: The case of indolicidin. Soft Matter 14(43), 8750-8763.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Nielsen, J. E., V. A. Bjørnestad and R. LundResolving the structural interactions between antimicrobial peptides and lipid membranes using small-angle scattering methods: The case of indolicidinSoft Matter14(43), 8750-876310.1039/c8sm01888j
2018Nienaber, K. H., M. J. Pushie, J. J. H. Cotelesage, I. J. Pickering and G. N. George. Cryoprotectants Severely Exacerbate X-ray-Induced Photoreduction. Journal of Physical Chemistry Letters 9(3), 540-544.Stanford Synchrotron Radiation LightsourceNienaber, K. H., M. J. Pushie, J. J. H. Cotelesage, I. J. Pickering and G. N. GeorgeCryoprotectants Severely Exacerbate X-ray-Induced PhotoreductionJournal of Physical Chemistry Letters9(3), 540-54410.1021/acs.jpclett.7b03111
2018Ogorzalek, T. L., G. L. Hura, A. Belsom, K. H. Burnett, A. Kryshtafovych, J. A. Tainer, J. Rappsilber, S. E. Tsutakawa and K. Fidelis. Small angle X-ray scattering and cross-linking for data assisted protein structure prediction in CASP 12 with prospects for improved accuracy. Proteins: Structure, Function and Bioinformatics 86, 202-214.Advanced Light SourceStructurally Integrated Biology for the Life SciencesOgorzalek, T. L., G. L. Hura, A. Belsom, K. H. Burnett, A. Kryshtafovych, J. A. Tainer, J. Rappsilber, S. E. Tsutakawa and K. FidelisSmall angle X-ray scattering and cross-linking for data assisted protein structure prediction in CASP 12 with prospects for improved accuracyProteins: Structure, Function and Bioinformatics86, 202-21410.1002/prot.25452
2018Oliver, R. C., S. H. Naing, K. L. Weiss, S. V. Pingali, R. L. Lieberman and V. S. Urban. Contrast-Matching Detergent in Small-Angle Neutron Scattering Experiments for Membrane Protein Structural Analysis and Ab Initio Modeling. Journal of visualized experiments (140), e57901.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Oliver, R. C., S. H. Naing, K. L. Weiss, S. V. Pingali, R. L. Lieberman and V. S. UrbanContrast-Matching Detergent in Small-Angle Neutron Scattering Experiments for Membrane Protein Structural Analysis and Ab Initio ModelingJournal of visualized experiments(140), e5790110.3791/57901
2018Panigrahi, R., T. Matsui, A. H. Song, K. M. P. Caldo, H. S. Young, R. J. Weselake and M. J. Lemieux. Intrinsic disorder in the regulatory N-terminal domain of diacylglycerol acyltransferase 1 from Brassica napus. Scientific Reports 8(1).Stanford Synchrotron Radiation LightsourcePanigrahi, R., T. Matsui, A. H. Song, K. M. P. Caldo, H. S. Young, R. J. Weselake and M. J. LemieuxIntrinsic disorder in the regulatory N-terminal domain of diacylglycerol acyltransferase 1 from Brassica napusScientific Reports8(1), 10.1038/s41598-018-34339-1
2018Peek, J., M. Lilic, D. Montiel, A. Milshteyn, I. Woodworth, J. B. Biggins, M. A. Ternei, P. Y. Calle, M. Danziger, T. Warrier, K. Saito, N. Braffman, A. Fay, M. S. Glickman, S. A. Darst, E. A. Campbell and S. F. Brady. Rifamycin congeners kanglemycins are active against rifampicin-resistant bacteria via a distinct mechanism. Nature Communications 9(1).NSLS-IICenter for BioMolecular StructureX-Ray Macromolecular Crystallography (MX)Peek, J., M. Lilic, D. Montiel, A. Milshteyn, I. Woodworth, J. B. Biggins, M. A. Ternei, P. Y. Calle, M. Danziger, T. Warrier, K. Saito, N. Braffman, A. Fay, M. S. Glickman, S. A. Darst, E. A. Campbell and S. F. BradyRifamycin congeners kanglemycins are active against rifampicin-resistant bacteria via a distinct mechanismNature Communications9(1), 10.1038/s41467-018-06587-2(related highlight) (feature story)
2018Perdrial, N., A. Vázquez-Ortega, G. Wang, M. Kanematsu, K. T. Mueller, W. Um, C. I. Steefel, P. A. O'Day and J. Chorover. Uranium speciation in acid waste-weathered sediments: The role of aging and phosphate amendments. Applied Geochemistry 89, 109-120.Stanford Synchrotron Radiation LightsourcePerdrial, N., A. Vázquez-Ortega, G. Wang, M. Kanematsu, K. T. Mueller, W. Um, C. I. Steefel, P. A. O'Day and J. ChoroverUranium speciation in acid waste-weathered sediments: The role of aging and phosphate amendmentsApplied Geochemistry89(), 109-12010.1016/j.apgeochem.2017.12.001
2018Perera, S. M. D. C., U. Chawla, U. R. Shrestha, D. Bhowmik, A. V. Struts, S. Qian, X. Q. Chu and M. F. Brown. Small-Angle Neutron Scattering Reveals Energy Landscape for Rhodopsin Photoactivation. Journal of Physical Chemistry Letters 9(24), 7064-7071.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Perera, S. M. D. C., U. Chawla, U. R. Shrestha, D. Bhowmik, A. V. Struts, S. Qian, X. Q. Chu and M. F. BrownSmall-Angle Neutron Scattering Reveals Energy Landscape for Rhodopsin PhotoactivationJournal of Physical Chemistry Letters9(24), 7064-707110.1021/acs.jpclett.8b03048
2018Peselis, A. and A. Serganov. ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands. Nature Chemical Biology 14(9), 887-894.National Synchrotron Light Source IICenter for BioMolecular StructureX-ray Macromolecular Crystallography (MX)Peselis, A. and A. SerganovykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligandsNature Chemical Biology14(9), 887-89410.1038/s41589-018-0114-4
2018Petridis, L. and J. C. Smith. Molecular-level driving forces in lignocellulosic biomass deconstruction for bioenergy. Nature Reviews Chemistry 2(11), 382-389.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Petridis, L. and J. C. SmithMolecular-level driving forces in lignocellulosic biomass deconstruction for bioenergyNature Reviews Chemistry2(11), 382-38910.1038/s41570-018-0050-6
2018Pinney, M. M., A. Natarajan, F. Yabukarski, D. M. Sanchez, F. Liu, R. Liang, T. Doukov, J. P. Schwans, T. J. Martinez and D. Herschlag. Structural Coupling Throughout the Active Site Hydrogen Bond Networks of Ketosteroid Isomerase and Photoactive Yellow Protein. Journal of the American Chemical Society 140(31), 9827-9843.Stanford Synchrotron Radiation LightsourcePinney, M. M., A. Natarajan, F. Yabukarski, D. M. Sanchez, F. Liu, R. Liang, T. Doukov, J. P. Schwans, T. J. Martinez and D. HerschlagStructural Coupling Throughout the Active Site Hydrogen Bond Networks of Ketosteroid Isomerase and Photoactive Yellow ProteinJournal of the American Chemical Society140(31), 9827-984310.1021/jacs.8b01596
2018Purohit, R., M. O. Ross, S. Batelu, A. Kusowski, T. L. Stemmler, B. M. Hoffman and A. C. Rosenzweig. Cu+-specific CopB transporter: Revising p1B-type ATPase classification. Proceedings of the National Academy of Sciences of the United States of America 115(9), 2108-2113.Stanford Synchrotron Radiation LightsourcePurohit, R., M. O. Ross, S. Batelu, A. Kusowski, T. L. Stemmler, B. M. Hoffman and A. C. RosenzweigCu+-specific CopB transporter: Revising p1B-type ATPase classificationProceedings of the National Academy of Sciences of the United States of America115(9), 2108-211310.1073/pnas.1721783115
2018Qian, S. and D. K. Rai. Grazing-Angle Neutron Diffraction Study of the Water Distribution in Membrane Hemifusion: From the Lamellar to Rhombohedral Phase. Journal of Physical Chemistry Letters 9(19), 5778-5784.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Qian, S. and D. K. RaiGrazing-Angle Neutron Diffraction Study of the Water Distribution in Membrane Hemifusion: From the Lamellar to Rhombohedral PhaseJournal of Physical Chemistry Letters9(19), 5778-578410.1021/acs.jpclett.8b01602
2018Raven, M. R., D. A. Fike, M. L. Gomes, S. M. Webb, A. S. Bradley and H. L. O. McClelland. Organic carbon burial during OAE2 driven by changes in the locus of organic matter sulfurization. Nature Communications 9(1).Stanford Synchrotron Radiation LightsourceRaven, M. R., D. A. Fike, M. L. Gomes, S. M. Webb, A. S. Bradley and H. L. O. McClellandOrganic carbon burial during OAE2 driven by changes in the locus of organic matter sulfurizationNature Communications9(1), 10.1038/s41467-018-05943-6
2018Ro, S. Y., M. O. Ross, Y. W. Deng, S. Batelu, T. J. Lawton, J. D. Hurley, T. L. Stemmler, B. M. Hoffman and A. C. Rosenzweig. From micelles to bicelles: Effect of the membrane on particulate methane monooxygenase activity. Journal of Biological Chemistry 293(27), 10457-10465.Stanford Synchrotron Radiation LightsourceRo, S. Y., M. O. Ross, Y. W. Deng, S. Batelu, T. J. Lawton, J. D. Hurley, T. L. Stemmler, B. M. Hoffman and A. C. RosenzweigFrom micelles to bicelles: Effect of the membrane on particulate methane monooxygenase activityJournal of Biological Chemistry293(27), 10457-1046510.1074/jbc.RA118.003348
2018Rose, H. R., M. K. Ghosh, A. O. Maggiolo, C. J. Pollock, E. J. Blaesi, V. Hajj, Y. Wei, L. J. Rajakovich, W. C. Chang, Y. Han, M. Hajj, C. Krebs, A. Silakov, M. E. Pandelia, J. M. Bollinger and A. K. Boal. Structural Basis for Superoxide Activation of Flavobacterium johnsoniae Class i Ribonucleotide Reductase and for Radical Initiation by Its Dimanganese Cofactor. Biochemistry 57(18), 2679-2693.DOI: 10.1021/acs.biochem.8b00247Stanford Synchrotron Radiation LightsourceRose, H. R., M. K. Ghosh, A. O. Maggiolo, C. J. Pollock, E. J. Blaesi, V. Hajj, Y. Wei, L. J. Rajakovich, W. C. Chang, Y. Han, M. Hajj, C. Krebs, A. Silakov, M. E. Pandelia, J. M. Bollinger and A. K. BoalStructural Basis for Superoxide Activation of Flavobacterium johnsoniae Class i Ribonucleotide Reductase and for Radical Initiation by Its Dimanganese CofactorBiochemistry57(18), 2679-269310.1021/acs.biochem.8b00247
2018Ruckthong, L., A. Deb, L. Hemmingsen, J. E. Penner-Hahn and V. L. Pecoraro. Incorporation of second coordination sphere d-amino acids alters Cd(II), geometries in designed thiolate-rich proteins. Journal of Biological Inorganic Chemistry 23(1), 123-135.DOI: 10.1007/s00775-017-1515-7Stanford Synchrotron Radiation LightsourceRuckthong, L., A. Deb, L. Hemmingsen, J. E. Penner-Hahn and V. L. PecoraroIncorporation of second coordination sphere d-amino acids alters Cd(II), geometries in designed thiolate-rich proteinsJournal of Biological Inorganic Chemistry23(1), 123-13510.1007/s00775-017-1515-7
2018Ruszkowski, M., B. Sekula, A. Ruszkowska and Z. Dauter. Chloroplastic serine hydroxymethyltransferase from Medicago truncatula: A structural characterization. Frontiers in Plant Science 9.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Ruszkowski, M., B. Sekula, A. Ruszkowska and Z. DauterChloroplastic serine hydroxymethyltransferase from Medicago truncatula: A structural characterizationFrontiers in Plant Science9, 10.3389/fpls.2018.00584
2018Ruszkowski, M.. Guarding the gateway to histidine biosynthesis in plants: Medicago truncatula ATP-phosphoribosyltransferase in relaxed and tense states. Biochemical Journal 475(16), 2681-2697.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Ruszkowski, M.Guarding the gateway to histidine biosynthesis in plants: Medicago truncatula ATP-phosphoribosyltransferase in relaxed and tense statesBiochemical Journal475(16), 2681-269710.1042/BCJ20180289
2018Samara, Y. N., H. M. Brennan, L. McCarthy, M. T. Bollard, D. Laspina, J. M. Wlodek, S. L. Campos, R. Natarajan, K. Gofron, S. McSweeney, A. S. Soares and L. Leroy. Using sound pulses to solve the crystal-harvesting bottleneck. Acta Crystallographica Section D: Structural Biology 74, 986-999.National Synchrotron Light Source II, Stanford Synchrotron Radiation LightsourceCenter for BioMolecular StructureX-ray Macromolecular Crystallography (MX)Samara, Y. N., H. M. Brennan, L. McCarthy, M. T. Bollard, D. Laspina, J. M. Wlodek, S. L. Campos, R. Natarajan, K. Gofron, S. McSweeney, A. S. Soares and L. LeroyUsing sound pulses to solve the crystal-harvesting bottleneckActa Crystallographica Section D: Structural Biology74, 986-99910.1107/S2059798318011506
2018Sarangi, R.. A biological perspective towards a standard for information exchange and reporting in XAS. Journal of Synchrotron Radiation 25(4), 944-952.Stanford Synchrotron Radiation LightsourceSarangi, R.A biological perspective towards a standard for information exchange and reporting in XASJournal of Synchrotron Radiation25(4), 944-95210.1107/S1600577518008779
2018Sawada, D., U. C. Kalluri, H. O'Neill, V. Urban, P. Langan, B. Davison and S. V. Pingali. Tension wood structure and morphology conducive for better enzymatic digestion. Biotechnology for Biofuels 11(1).Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Sawada, D., U. C. Kalluri, H. O'Neill, V. Urban, P. Langan, B. Davison and S. V. PingaliTension wood structure and morphology conducive for better enzymatic digestionBiotechnology for Biofuels11(1), 10.1186/s13068-018-1043-x
2018Schneidman-Duhovny, D. and M. Hammel. Modeling structure and dynamics of protein complexes with SAXS profiles. Serial 1764, 449-473.Advanced Light SourceStructurally Integrated Biology for the Life SciencesSchneidman-Duhovny, D. and M. HammelModeling structure and dynamics of protein complexes with SAXS profilesSerial1764(), 449-47310.1007/978-1-4939-7759-8_29
2018Sekula, B. and Z. Dauter. Crystal structure of thermospermine synthase from Medicago truncatula and substrate discriminatory features of plant aminopropyltransferases. Biochemical Journal 475(4), 787-802.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Sekula, B. and Z. DauterCrystal structure of thermospermine synthase from Medicago truncatula and substrate discriminatory features of plant aminopropyltransferasesBiochemical Journal475(4), 787-80210.1042/BCJ20170900
2018Sekula, B., M. Ruszkowski and Z. Dauter. Structural analysis of phosphoserine aminotransferase (isoform 1), from Arabidopsis thaliana– the enzyme involved in the phosphorylated pathway of serine biosynthesis. Frontiers in Plant Science 9.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Sekula, B., M. Ruszkowski and Z. DauterStructural analysis of phosphoserine aminotransferase (isoform 1), from Arabidopsis thaliana– the enzyme involved in the phosphorylated pathway of serine biosynthesisFrontiers in Plant Science9, 10.3389/fpls.2018.00876
2018Sharma, P. R., B. Zheng, S. K. Sharma, C. Zhan, R. Wang, S. R. Bhatia and B. S. Hsiao. High Aspect Ratio Carboxycellulose Nanofibers Prepared by Nitro-Oxidation Method and Their Nanopaper Properties. ACS Applied Nano Materials 1(8), 3969-3980.National Synchrotron Light Source IICenter for BioMolecular StructureSmall-Angle X-ray Scattering (SAXS)Sharma, P. R., B. Zheng, S. K. Sharma, C. Zhan, R. Wang, S. R. Bhatia and B. S. HsiaoHigh Aspect Ratio Carboxycellulose Nanofibers Prepared by Nitro-Oxidation Method and Their Nanopaper PropertiesACS Applied Nano Materials1(8), 3969-398010.1021/acsanm.8b00744
2018Sharma, P., E. Maklashina, G. Cecchini, and T.M. Iverson. 2018. "Crystal structure of an assembly intermediate of respiratory Complex II," Nature Communications 9(1) 274.Stanford Synchrotron Radiation LightsourceStructural Molecular Biology ResourceSolution X-ray Scattering (SAXS)Sharma, P., E. Maklashina, G. Cecchini, and T.M. IversonCrystal structure of an assembly intermediate of respiratory Complex IINature Communications9(1)27410.1038/s41467-017-02713-8(related highlight)
2018Sherp, A. M., C. S. Westfall, S. Alvarez and J. M. Jez. Arabidopsis thaliana GH3.15 acyl acid amido synthetase has a highly specific substrate preference for the auxin precursor indole-3-butyric acid. Journal of Biological Chemistry 293(12), 4277-4288.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Sherp, A. M., C. S. Westfall, S. Alvarez and J. M. JezArabidopsis thaliana GH3.15 acyl acid amido synthetase has a highly specific substrate preference for the auxin precursor indole-3-butyric acidJournal of Biological Chemistry293(12), 4277-428810.1074/jbc.RA118.002006
2018Sherp, A. M., S. G. Lee, E. Schraft and J. M. Jez. Modification of auxinic phenoxyalkanoic acid herbicides by the acyl acid amido synthetase GH3.15 from Arabidopsis. Journal of Biological Chemistry 293(46), 17731-17738.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Sherp, A. M., S. G. Lee, E. Schraft and J. M. JezModification of auxinic phenoxyalkanoic acid herbicides by the acyl acid amido synthetase GH3.15 from ArabidopsisJournal of Biological Chemistry293(46), 17731-1773810.1074/jbc.RA118.004975
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2018Skubak, P., D. Arac, M. W. Bowler, A. R. Correia, A. Hoelz, S. Larsen, G. A. Leonard, A. A. McCarthy, S. McSweeney, C. Mueller-Dieckmann, H. Otten, G. Salzman and N. S. Pannua. A new MR-SAD algorithm for the automatic building of protein models from low-resolution X-ray data and a poor starting model. IUCrJ 5, 166-171.Stanford Synchrotron Radiation LightsourceSkubak, P., D. Arac, M. W. Bowler, A. R. Correia, A. Hoelz, S. Larsen, G. A. Leonard, A. A. McCarthy, S. McSweeney, C. Mueller-Dieckmann, H. Otten, G. Salzman and N. S. PannuaA new MR-SAD algorithm for the automatic building of protein models from low-resolution X-ray data and a poor starting modelIUCrJ5, 166-17110.1107/S2052252517017961
2018Sood, A., O. O. Gerlits, Y. Ji, N. V. Bovin, L. Coates and R. J. Woods. Defining the Specificity of Carbohydrate-Protein Interactions by Quantifying Functional Group Contributions. Journal of Chemical Information and Modeling 58(9), 1889-1901.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Sood, A., O. O. Gerlits, Y. Ji, N. V. Bovin, L. Coates and R. J. WoodsDefining the Specificity of Carbohydrate-Protein Interactions by Quantifying Functional Group ContributionsJournal of Chemical Information and Modeling58(9), 1889-190110.1021/acs.jcim.8b00120
2018Speelman, A. L., C. J. White, B. Zhang, E. E. Alp, J. Zhao, M. Hu, C. Krebs, J. Penner-Hahn and N. Lehnert. Non-heme High-Spin {FeNO}6-8 Complexes: One Ligand Platform Can Do It All. Journal of the American Chemical Society 140(36), 11341-11359.Stanford Synchrotron Radiation LightsourceSpeelman, A. L., C. J. White, B. Zhang, E. E. Alp, J. Zhao, M. Hu, C. Krebs, J. Penner-Hahn and N. LehnertNon-heme High-Spin {FeNO}6-8 Complexes: One Ligand Platform Can Do It AllJournal of the American Chemical Society140(36), 11341-1135910.1021/jacs.8b06095
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2018Sreelatha, A., S. S. Yee, V. A. Lopez, B. C. Park, L. N. Kinch, S. Pilch, K. A. Servage, J. Zhang, J. Jiou, M. Karasiewicz-Urbańska, M. Łobocka, N. V. Grishin, K. Orth, R. Kucharczyk, K. Pawłowski, D. R. Tomchick and V. S. Tagliabracci. Protein AMPylation by an Evolutionarily Conserved Pseudokinase. Cell 175(3), 809-821.e19.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Sreelatha, A., S. S. Yee, V. A. Lopez, B. C. Park, L. N. Kinch, S. Pilch, K. A. Servage, J. Zhang, J. Jiou, M. Karasiewicz-Urbańska, M. Łobocka, N. V. Grishin, K. Orth, R. Kucharczyk, K. Pawłowski, D. R. Tomchick and V. S. TagliabracciProtein AMPylation by an Evolutionarily Conserved PseudokinaseCell175(3), 809-821.e1910.1016/j.cell.2018.08.046
2018Sternhagen, G. L., S. Gupta, Y. Zhang, V. John, G. J. Schneider and D. Zhang. Solution Self-Assemblies of Sequence-Defined Ionic Peptoid Block Copolymers. Journal of the American Chemical Society 140(11), 4100-4109.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Sternhagen, G. L., S. Gupta, Y. Zhang, V. John, G. J. Schneider and D. ZhangSolution Self-Assemblies of Sequence-Defined Ionic Peptoid Block CopolymersJournal of the American Chemical Society140(11), 4100-410910.1021/jacs.8b00461
2018Subramanian, R.H., S. J. Smith, R. G. Alberstein, J. B. Bailey, L. Zhang, G. Cardone, L. Suominen, M. Chami, H. Stahlberg, T. S. Baker, F. A. Tezcan. Self-assembly of a designed nucleoprotein architecture through multimodal interactions. ACS Central Science 4(11), 1578-1586.SSRLStructural Molecular Biology ResourceSolution X-ray Scattering (SAXS)Subramanian, R.H., S. J. Smith, R. G. Alberstein, J. B. Bailey, L. Zhang, G. Cardone, L. Suominen, M. Chami, H. Stahlberg, T. S. Baker, F. A. TezcanSelf-assembly of a designed nucleoprotein architecture through multimodal interactionsACS Central Science4(11), 1578-158610.1021/acscentsci.8b00745(related highlight)
2018Sui, X., E. R. Farquhar, H. E. Hill, J. von Lintig, W. Shi and P. D. Kiser. Preparation and characterization of metal-substituted carotenoid cleavage oxygenases. Journal of Biological Inorganic Chemistry 23(6), 887-901.Stanford Synchrotron Radiation LightsourceSui, X., E. R. Farquhar, H. E. Hill, J. von Lintig, W. Shi and P. D. KiserPreparation and characterization of metal-substituted carotenoid cleavage oxygenasesJournal of Biological Inorganic Chemistry23(6), 887-90110.1007/s00775-018-1586-0
2018Tebo, A. G., T. B. J. Pinter, R. García-Serres, A. L. Speelman, C. Tard, O. Sénéque, G. Blondin, J. M. Latour, J. Penner-Hahn, N. Lehnert and V. L. Pecoraro. Development of a Rubredoxin-Type Center Embedded in a de Dovo -Designed Three-Helix Bundle. Biochemistry 57(16), 2308-2316.Stanford Synchrotron Radiation LightsourceTebo, A. G., T. B. J. Pinter, R. García-Serres, A. L. Speelman, C. Tard, O. Sénéque, G. Blondin, J. M. Latour, J. Penner-Hahn, N. Lehnert and V. L. PecoraroDevelopment of a Rubredoxin-Type Center Embedded in a de Dovo -Designed Three-Helix BundleBiochemistry57(16), 2308-231610.1021/acs.biochem.8b00091
2018Tejeda-Guzmán, C., A. Rosas-Arellano, T. Kroll, S. M. Webb, M. Barajas-Aceves, B. Osorio and F. Missirlis. Biogenesis of zinc storage granules in Drosophila melanogaster. Journal of Experimental Biology 221(6).Stanford Synchrotron Radiation LightsourceTejeda-Guzmán, C., A. Rosas-Arellano, T. Kroll, S. M. Webb, M. Barajas-Aceves, B. Osorio and F. MissirlisBiogenesis of zinc storage granules in Drosophila melanogasterJournal of Experimental Biology221(6), 10.1242/jeb.168419
2018Tripathi, S. and T. L. Poulos. Testing the N-Terminal Velcro Model of CooA Carbon Monoxide Activation. Biochemistry 57(21), 3059-3064.Stanford Synchrotron Radiation LightsourceTripathi, S. and T. L. PoulosTesting the N-Terminal Velcro Model of CooA Carbon Monoxide ActivationBiochemistry57(21), 3059-306410.1021/acs.biochem.8b00359
2018Truong, P. T., E. P. Broering, S. P. Dzul, I. Chakraborty, T. L. Stemmler and T. C. Harrop. Simultaneous nitrosylation and N-nitrosation of a Ni-thiolate model complex of Ni-containing SOD. Chemical Science 9(45), 8567-8574.Stanford Synchrotron Radiation LightsourceTruong, P. T., E. P. Broering, S. P. Dzul, I. Chakraborty, T. L. Stemmler and T. C. HarropSimultaneous nitrosylation and N-nitrosation of a Ni-thiolate model complex of Ni-containing SODChemical Science9(45), 8567-857410.1039/c8sc03321h
2018Tschauner, O., S. Huang, E. Greenberg, V. B. Prakapenka, C. Ma, G. R. Rossman, A. H. Shen, D. Zhang, M. Newville, A. Lanzirotti and K. Tait. Ice-VII inclusions in diamonds: Evidence for aqueous fluid in Earth’s deep mantle. Science 359(6380), 1136-1139.Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramBerkeley Synchrotron Infrared Structural Biology Imaging Program Synchrotron Infrared Hyperspectral ImagingTschauner, O., S. Huang, E. Greenberg, V. B. Prakapenka, C. Ma, G. R. Rossman, A. H. Shen, D. Zhang, M. Newville, A. Lanzirotti and K. TaitIce-VII inclusions in diamonds: Evidence for aqueous fluid in Earth’s deep mantleScience359(6380), 1136-113910.1126/science.aao3030
2018Tu, Y., C. A. Kreinbring, M. Hill, C. Liu, G. A. Petsko, C. D. McCune, D. B. Berkowitz, D. Liu and D. Ringe. Crystal Structures of Cystathionine β-Synthase from Saccharomyces cerevisiae: One Enzymatic Step at a Time. Biochemistry 57(22), 3134-3145.DOI: 10.1021/acs.biochem.8b00092Structural Biology CenterX-ray Macromolecular Crystallography (MX)Tu, Y., C. A. Kreinbring, M. Hill, C. Liu, G. A. Petsko, C. D. McCune, D. B. Berkowitz, D. Liu and D. RingeCrystal Structures of Cystathionine β-Synthase from Saccharomyces cerevisiae: One Enzymatic Step at a TimeBiochemistry57(22), 3134-314510.1021/acs.biochem.8b00092
2018Valdespino-Castillo, P. M., P. Hu, M. Merino-Ibarra, L. M. López-Gómez, D. Cerqueda-García, R. G. D. Zayas, T. Pi-Puig, J. A. Lestayo, H. Y. Holman and L. I. Falcón. Exploring biogeochemistry and microbial diversity of extant microbialites in Mexico and Cuba. Frontiers in Microbiology 9(APR).Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramSynchrotron Infrared Hyperspectral ImagingValdespino-Castillo, P. M., P. Hu, M. Merino-Ibarra, L. M. López-Gómez, D. Cerqueda-García, R. G. D. Zayas, T. Pi-Puig, J. A. Lestayo, H. Y. Holman and L. I. FalcónExploring biogeochemistry and microbial diversity of extant microbialites in Mexico and CubaFrontiers in Microbiology9(APR), 10.3389/fmicb.2018.00510
2018Vaynberg, J., K. Fukuda, F. Lu, K. Bialkowska, Y. Chen, E. F. Plow and J. Qin. Non-catalytic signaling by pseudokinase ILK for regulating cell adhesion. Nature Communications 9(1).Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Vaynberg, J., K. Fukuda, F. Lu, K. Bialkowska, Y. Chen, E. F. Plow and J. QinNon-catalytic signaling by pseudokinase ILK for regulating cell adhesionNature Communications9(1), 10.1038/s41467-018-06906-7
2018Vega-García, V., A. Díaz-Vilchis, J. P. Saucedo-Vázquez, A. Solano-Peralta, E. Rudiño-Piñera and W. Hansberg. Structure, kinetics, molecular and redox properties of a cytosolic and developmentally regulated fungal catalase-peroxidase. Archives of Biochemistry and Biophysics 640, 17-26.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Vega-García, V., A. Díaz-Vilchis, J. P. Saucedo-Vázquez, A. Solano-Peralta, E. Rudiño-Piñera and W. HansbergStructure, kinetics, molecular and redox properties of a cytosolic and developmentally regulated fungal catalase-peroxidaseArchives of Biochemistry and Biophysics640(), 17-2610.1016/j.abb.2017.12.021
2018Vickers, C., F. Liu, K. Abe, O. Salama-Alber, M. Jenkins, C. M. K. Springate, J. E. Burke, S. G. Withers and A. B. Boraston. Endo-fucoidan hydrolases from glycoside hydrolase family 107 (GH107), display structural and mechanistic similarities to -L-fucosidases from GH29. Journal of Biological Chemistry 293(47), 18296-18308.Stanford Synchrotron Radiation LightsourceVickers, C., F. Liu, K. Abe, O. Salama-Alber, M. Jenkins, C. M. K. Springate, J. E. Burke, S. G. Withers and A. B. BorastonEndo-fucoidan hydrolases from glycoside hydrolase family 107 (GH107), display structural and mechanistic similarities to -L-fucosidases from GH29Journal of Biological Chemistry293(47), 18296-1830810.1074/jbc.RA118.005134
2018Victor, T. W., L. M. Easthon, M. Ge, K. H. O’Toole, R. J. Smith, X. Huang, H. Yan, K. N. Allen, Y. S. Chu and L. M. Miller. 2018. "X-ray Fluorescence Nanotomography of Single Bacteria with a Sub-15 nm Beam," Scientific Reports 8(1).National Synchrotron Light Source IICenter for BioMolecular StructureX-ray Fluorescence Imaging, X-ray PtychographyVictor, T. W., L. M. Easthon, M. Ge, K. H. O’Toole, R. J. Smith, X. Huang, H. Yan, K. N. Allen, Y. S. Chu and L. M. MillerX-ray Fluorescence Nanotomography of Single Bacteria with a Sub-15 nm BeamScientific Reports8(1), 10.1038/s41598-018-31461-y(related highlight)
2018Vilbert, A. C., J. D. Caranto and K. M. Lancaster. Influences of the heme-lysine crosslink in cytochrome P460 over redox catalysis and nitric oxide sensitivity. Chemical Science 9(2), 368-379.DOI: 10.1039/c7sc03450dStanford Synchrotron Radiation LightsourceVilbert, A. C., J. D. Caranto and K. M. LancasterInfluences of the heme-lysine crosslink in cytochrome P460 over redox catalysis and nitric oxide sensitivityChemical Science9(2), 368-37910.1039/c7sc03450d
2018Wang, N., J. D. Rudolf, L. B. Dong, J. Osipiuk, C. Hatzos-Skintges, M. Endres, C. Y. Chang, G. Babnigg, A. Joachimiak, G. N. Phillips and B. Shen. Natural separation of the acyl-CoA ligase reaction results in a non-adenylating enzyme article. Nature Chemical Biology 14(7), 730-737.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Wang, N., J. D. Rudolf, L. B. Dong, J. Osipiuk, C. Hatzos-Skintges, M. Endres, C. Y. Chang, G. Babnigg, A. Joachimiak, G. N. Phillips and B. ShenNatural separation of the acyl-CoA ligase reaction results in a non-adenylating enzyme articleNature Chemical Biology14(7), 730-73710.1038/s41589-018-0061-0
2018Wang, X., K. Dong, H. S. Choe, H. Liu, S. Lou, K. B. Tom, H. A. Bechtel, Z. You, J. Wu and J. Yao. Multifunctional Microelectro-Opto-mechanical Platform Based on Phase-Transition Materials. Nano Letters 18(3), 1637-1643.Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramSynchrotron Infrared Hyperspectral ImagingWang, X., K. Dong, H. S. Choe, H. Liu, S. Lou, K. B. Tom, H. A. Bechtel, Z. You, J. Wu and J. YaoMultifunctional Microelectro-Opto-mechanical Platform Based on Phase-Transition MaterialsNano Letters18(3), 1637-164310.1021/acs.nanolett.7b04477
2018Wang, Z., S. R. Bagde, G. Zavala, T. Matsui, X. Chen and C. Y. Kim. De Novo Design and Implementation of a Tandem Acyl Carrier Protein Domain in a Type i Modular Polyketide Synthase. ACS Chemical Biology 13(11), 3072-3077.Stanford Synchrotron Radiation LightsourceWang, Z., S. R. Bagde, G. Zavala, T. Matsui, X. Chen and C. Y. KimDe Novo Design and Implementation of a Tandem Acyl Carrier Protein Domain in a Type i Modular Polyketide SynthaseACS Chemical Biology13(11), 3072-307710.1021/acschembio.8b00896
2018Wassall, S. R., X. Leng, S. W. Canner, E. R. Pennington, J. J. Kinnun, A. T. Cavazos, S. Dadoo, D. Johnson, F. A. Heberle, J. Katsaras and S. R. Shaikh. Docosahexaenoic acid regulates the formation of lipid rafts: A unified view from experiment and simulation. Biochimica et Biophysica Acta - Biomembranes 1860(10), 1985-1993.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Wassall, S. R., X. Leng, S. W. Canner, E. R. Pennington, J. J. Kinnun, A. T. Cavazos, S. Dadoo, D. Johnson, F. A. Heberle, J. Katsaras and S. R. ShaikhDocosahexaenoic acid regulates the formation of lipid rafts: A unified view from experiment and simulationBiochimica et Biophysica Acta - Biomembranes1860(10), 1985-199310.1016/j.bbamem.2018.04.016
2018Williams, L.. Neutrons provide the first nanoscale look at a living cell membrane. Neutron News 29(1), 21-22.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Williams, L.Neutrons provide the first nanoscale look at a living cell membraneNeutron News29(1), 21-2210.1080/10448632.2018.1446594
2018Xu, C., K. Liu, M. Lei, A. Yang, Y. Li, T.R. Hughes, and J. Min. DNA sequence recognition of human CXXC domains and their structural determinants. Structure 26(1) 85-95.e83.Advanced Photon SourceStructural Biology Center X-ray Macromolecular Crystallography (MX)Xu, C., K. Liu, M. Lei, A. Yang, Y. Li, T.R. Hughes, and J. MinDNA sequence recognition of human CXXC domains and their structural determinantsStructure26(1) 85-95.e8310.1016/j.str.2017.11.022
2018Xu, S., Y. Liu, X. Li, Y. Liu, R. Meijers, Y. Zhang and J. H. Wang. The binding of DCC-P3 motif and FAK-FAT domain mediates the initial step of netrin-1/DCC signaling for axon attraction. Cell Discovery 4(1).Advanced Photon SourceStructural Biology CenterStructural Biology Center X-ray Macromolecular Crystallography (MX)Xu, S., Y. Liu, X. Li, Y. Liu, R. Meijers, Y. Zhang and J. H. WangThe binding of DCC-P3 motif and FAK-FAT domain mediates the initial step of netrin-1/DCC signaling for axon attractionCell Discovery4(1), 10.1038/s41421-017-0008-8
2018Yang, F., Y. Wang, N. Sumathipala, X. Cao, M. R. Kanost and H. Jiang. Manduca sexta serpin-12 controls the prophenoloxidase activation system in larval hemolymph. Insect Biochemistry and Molecular Biology 99, 27-36.Advanced Photon SourceStructural Biology CenterStructural Biology Center X-ray Macromolecular Crystallography (MX)Yang, F., Y. Wang, N. Sumathipala, X. Cao, M. R. Kanost and H. JiangManduca sexta serpin-12 controls the prophenoloxidase activation system in larval hemolymphInsect Biochemistry and Molecular Biology99(), 27-3610.1016/j.ibmb.2018.05.004
2018Yang, Y. J., D. J. Mai, T. J. Dursch and B. D. Olsen. Nucleopore-Inspired Polymer Hydrogels for Selective Biomolecular Transport. Biomacromolecules 19(10), 3905-3916.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Yang, Y. J., D. J. Mai, T. J. Dursch and B. D. OlsenNucleopore-Inspired Polymer Hydrogels for Selective Biomolecular TransportBiomacromolecules19(10), 3905-391610.1021/acs.biomac.8b00556
2018Yang, Y., F. Liu and A. Liu. Adapting to oxygen: 3-Hydroxyanthrinilate 3,4-dioxygenase employs loop dynamics to accommodate two substrates with disparate polarities. Journal of Biological Chemistry 293(27), 10415-10424.Advanced Photon Source, Stanford Synchrotron Radiation LightsourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Yang, Y., F. Liu and A. LiuAdapting to oxygen: 3-Hydroxyanthrinilate 3,4-dioxygenase employs loop dynamics to accommodate two substrates with disparate polaritiesJournal of Biological Chemistry293(27), 10415-1042410.1074/jbc.RA118.002698
2018Ye, D., T. P. Le, B. Kuei, C. Zhu, P. H. Zwart, C. Wang, E. D. Gomez and E. W. Gomez. Resonant Soft X-Ray Scattering Provides Protein Structure with Chemical Specificity. Structure 26(11), 1513-1521.e3.Stanford Synchrotron Radiation LightsourceYe, D., T. P. Le, B. Kuei, C. Zhu, P. H. Zwart, C. Wang, E. D. Gomez and E. W. GomezResonant Soft X-Ray Scattering Provides Protein Structure with Chemical SpecificityStructure26(11), 1513-1521.e310.1016/j.str.2018.07.018
2018Yoshizawa, T., R. Ali, J. Jiou, H. Y. J. Fung, K. A. Burke, S. J. Kim, Y. Lin, W. B. Peeples, D. Saltzberg, M. Soniat, J. M. Baumhardt, R. Oldenbourg, A. Sali, N. L. Fawzi, M. K. Rosen and Y. M. Chook. Nuclear Import Receptor Inhibits Phase Separation of FUS through Binding to Multiple Sites. Cell 173(3), 693-705.e22.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Yoshizawa, T., R. Ali, J. Jiou, H. Y. J. Fung, K. A. Burke, S. J. Kim, Y. Lin, W. B. Peeples, D. Saltzberg, M. Soniat, J. M. Baumhardt, R. Oldenbourg, A. Sali, N. L. Fawzi, M. K. Rosen and Y. M. ChookNuclear Import Receptor Inhibits Phase Separation of FUS through Binding to Multiple SitesCell173(3), 693-705.e2210.1016/j.cell.2018.03.003
2018Zhang, F., C. R. Simmons, J. Gates, Y. Liu and H. Yan. Self-Assembly of a 3D DNA Crystal Structure with Rationally Designed Six-Fold Symmetry. Angewandte Chemie - International Edition 57(38), 12504-12507.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Zhang, F., C. R. Simmons, J. Gates, Y. Liu and H. YanSelf-Assembly of a 3D DNA Crystal Structure with Rationally Designed Six-Fold SymmetryAngewandte Chemie - International Edition57(38), 12504-1250710.1002/anie.201807223
2018Zhang, L., J. B. Bailey, R. H. Subramanian and F. A. Tezcan. Hyperexpandable, self-healing macromolecular crystals with integrated polymer networks. Nature 557(7703), 86-91.Stanford Synchrotron Radiation LightsourceZhang, L., J. B. Bailey, R. H. Subramanian and F. A. TezcanHyperexpandable, self-healing macromolecular crystals with integrated polymer networksNature557(7703), 86-9110.1038/s41586-018-0057-7
2018Zhang, Y., M. Lei, X. Yang, Y. Feng, Y. Yang, P. Loppnau, Y. Li, Y. Yang, J. Min and Y. Liu. Structural and histone binding studies of the chromo barrel domain of TIP60. FEBS Letters 592(7), 1221-1232.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Zhang, Y., M. Lei, X. Yang, Y. Feng, Y. Yang, P. Loppnau, Y. Li, Y. Yang, J. Min and Y. LiuStructural and histone binding studies of the chromo barrel domain of TIP60FEBS Letters592(7), 1221-123210.1002/1873-3468.13021
2018Zhou, A., P. M. Crossland, A. Draksharapu, A. J. Jasniewski, S. T. Kleespies and L. Que. Oxoiron(IV), complexes as synthons for the assembly of heterobimetallic centers such as the Fe/Mn active site of Class Ic ribonucleotide reductases. Journal of Biological Inorganic Chemistry 23(1), 155-165.Stanford Synchrotron Radiation LightsourceZhou, A., P. M. Crossland, A. Draksharapu, A. J. Jasniewski, S. T. Kleespies and L. QueOxoiron(IV), complexes as synthons for the assembly of heterobimetallic centers such as the Fe/Mn active site of Class Ic ribonucleotide reductasesJournal of Biological Inorganic Chemistry23(1), 155-16510.1007/s00775-017-1517-5
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2017Bhagi-Damodaran, A., M. A. Michael, Q. Zhu, J. Reed, B. A. Sandoval, E. N. Mirts, S. Chakraborty, P. Moënne-Loccoz, Y. Zhang and Y. Lu. Why copper is preferred over iron for oxygen activation and reduction in haem-copper oxidases. Nature Chemistry 9(3), 257-263.Stanford Synchrotron Radiation LightsourceBhagi-Damodaran, A., M. A. Michael, Q. Zhu, J. Reed, B. A. Sandoval, E. N. Mirts, S. Chakraborty, P. Moënne-Loccoz, Y. Zhang and Y. LuWhy copper is preferred over iron for oxygen activation and reduction in haem-copper oxidasesNature Chemistry9(3), 257-26310.1038/nchem.2643
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2017Chandra, V., D. Wu, S. Li, N. Potluri, Y. Kim and F. Rastinejad. The quaternary architecture of RARβ-RXRα heterodimer facilitates domain-domain signal transmission. Nature Communications 8(1).Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Chandra, V., D. Wu, S. Li, N. Potluri, Y. Kim and F. RastinejadThe quaternary architecture of RARβ-RXRα heterodimer facilitates domain-domain signal transmissionNature Communications8(1) 10.1038/s41467-017-00981-y
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2017Coslovich, G., A. F. Kemper, S. Behl, B. Huber, H. A. Bechtel, T. Sasagawa, M. C. Martin, A. Lanzara and R. A. Kaindl. Ultrafast dynamics of vibrational symmetry breaking in a charge-ordered nickelate. Science Advances 3(11).Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramSynchrotron Infrared Hyperspectral ImagingCoslovich, G., A. F. Kemper, S. Behl, B. Huber, H. A. Bechtel, T. Sasagawa, M. C. Martin, A. Lanzara and R. A. KaindlUltrafast dynamics of vibrational symmetry breaking in a charge-ordered nickelateScience Advances3(11)10.1126/sciadv.1600735
2017Costa, K. C., N. R. Glasser, S. J. Conway and D. K. Newman. Pyocyanin degradation by a tautomerizing demethylase inhibits Pseudomonas aeruginosa biofilms. Science 355(6321).Stanford Synchrotron Radiation LightsourceCosta, K. C., N. R. Glasser, S. J. Conway and D. K. NewmanPyocyanin degradation by a tautomerizing demethylase inhibits Pseudomonas aeruginosa biofilmsScience355(6321)10.1126/science.aag3180
2017Crabo, A. G., B. Singh, T. Nguyen, S. Emami, G. T. Gassner and M. H. Sazinsky. Structure and biochemistry of phenylacetaldehyde dehydrogenase from the Pseudomonas putida S12 styrene catabolic pathway. Archives of Biochemistry and Biophysics 616, 47-58.Stanford Synchrotron Radiation LightsourceCrabo, A. G., B. Singh, T. Nguyen, S. Emami, G. T. Gassner and M. H. SazinskyStructure and biochemistry of phenylacetaldehyde dehydrogenase from the Pseudomonas putida S12 styrene catabolic pathwayArchives of Biochemistry and Biophysics616, 47-5810.1016/j.abb.2017.01.011
2017Currie, M. A., G. Brown, A. Wong, T. Ohira, K. Sugiyama, T. Suzuki, A. F. Yakunin and Z. Jia. Structural and functional characterization of the TYW3/Taw3 class of SAM-dependent methyltransferases. RNA 23(3), 346-354.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Currie, M. A., G. Brown, A. Wong, T. Ohira, K. Sugiyama, T. Suzuki, A. F. Yakunin and Z. JiaStructural and functional characterization of the TYW3/Taw3 class of SAM-dependent methyltransferasesRNA23(3), 346-35410.1261/rna.057943.116
2017Dahal, G. P. and R. E. Viola. Structure of a fungal form of aspartate-semialdehyde dehydrogenase from Aspergillus fumigatus. Acta Crystallographica Section:F Structural Biology Communications 73(1), 36-44.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Dahal, G. P. and R. E. ViolaStructure of a fungal form of aspartate-semialdehyde dehydrogenase from Aspergillus fumigatusActa Crystallographica Section:F Structural Biology Communications73(1), 36-4410.1107/S2053230X16020070
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2017Dhiman, I., H. Bilheux, K. DeCarlo, S.L. Painter, L. Santodonato and J.M. Warren. 2017. "Quantifying Root Water Extraction After Drought Recovery Using sub-mm in situ Empirical Data," Plant and Soil 424(1-2), 73–89.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular Biology Neutron ImagingDhiman, I., H. Bilheux, K. DeCarlo, S.L. Painter, L. Santodonato, and J.M. WarrenQuantifying root water extraction after drought recovery using sub-mm in situ empirical dataPlant and Soil424(1-2)73-8910.1007/s11104-017-3408-5(related highlight)
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2017Estes, E. R., P. F. Andeer, D. Nordlund, S. D. Wankel and C. M. Hansel. Biogenic manganese oxides as reservoirs of organic carbon and proteins in terrestrial and marine environments. Geobiology 15(1), 158-172.Stanford Synchrotron Radiation LightsourceEstes, E. R., P. F. Andeer, D. Nordlund, S. D. Wankel and C. M. HanselBiogenic manganese oxides as reservoirs of organic carbon and proteins in terrestrial and marine environmentsGeobiology15(1), 158-17210.1111/gbi.12195
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2017Fallas, J. A., G. Ueda, W. Sheffler, V. Nguyen, D. E. McNamara, B. Sankaran, J. H. Pereira, F. Parmeggiani, T. J. Brunette, D. Cascio, T. R. Yeates, P. Zwart and D. Baker. "Computational Design of Self-Assembling Cyclic Protein Homo-oligomers," Nature Chemistry 9(4), 353–60.Advanced Light Source, Advanced Photon SourceStructurally Integrated Biology for the Life SciencesSolution X-ray Scattering, X-ray Macromolecular CrystallographyFallas, J. A., G. Ueda, W. Sheffler, V. Nguyen, D. E. McNamara, B. Sankaran, J. H. Pereira, F. Parmeggiani, T. J. Brunette, D. Cascio, T. R. Yeates, P. Zwart and D. BakerComputational design of self-assembling cyclic protein homo-oligomersNature Chemistry9(4), 353-36010.1038/nchem.2673(related highlight)
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2017Fung, H. Y. J., S. C. Fu and Y. M. Chook. Nuclear export receptor CRM1 recognizes diverse conformations in nuclear export signals. eLife 6.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Fung, H. Y. J., S. C. Fu and Y. M. ChookNuclear export receptor CRM1 recognizes diverse conformations in nuclear export signalseLife610.7554/eLife.23961
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2017Gisriel, C., I. Sarrou, B. Ferlez, J.H. Golbeck, K.E. Redding and R. Fromme. "Structure of a symmetric photosynthetic reaction center-photosystem," Science 357(6355) 1021-1025.Advanced Light Source, Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Gisriel, C., I. Sarrou, B. Ferlez, J.H. Golbeck, K.E. Redding, and R. FrommeStructure of a symmetric photosynthetic reaction center-photosystemScience357(6355) 1021-102510.1126/science.aan5611(feature story) (related highlight)
2017Goodell, B., Y. Zhu, S. Kim, K. Kafle, D. Eastwood, G. Daniel, J. Jellison, M. Yoshida, L. Groom, S.V. Pingali, and H. O'Neill. Modification of the nanostructure of lignocellulose cell walls via a non-enzymatic lignocellulose deconstruction system in brown rot wood-decay fungi. Biotechnology for Biofuels 10, 179.SNS-HFIRCenter for Structural Molecular Biology Small-Angle Neutron Scattering (SANS), Neutron Spectroscopy (NS)Goodell, B., Y. Zhu, S. Kim, K. Kafle, D. Eastwood, G. Daniel, J. Jellison, M. Yoshida, L. Groom, S.V. Pingali, and H. O'NeillModification of the nanostructure of lignocellulose cell walls via a non-enzymatic lignocellulose deconstruction system in brown rot wood-decay fungiBiotechnology for Biofuels10, 17910.1186/s13068-017-0865-2(related highlight)
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2017Hong, F., B. Yue, N. Hirao, Z. Liu and B. Chen. Significant improvement in Mn2O3 transition metal oxide electrical conductivity via high pressure. Scientific Reports 7.Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramSynchrotron Infrared Hyperspectral ImagingHong, F., B. Yue, N. Hirao, Z. Liu and B. ChenSignificant improvement in Mn2O3 transition metal oxide electrical conductivity via high pressureScientific Reports710.1038/srep44078
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2017Jensen, M. R., B. R. Goblirsch, J. K. Christenson, M. A. Esler, F. A. Mohamed, L. P. Wackett and C. M. Wilmot. OleA Glu117 is key to condensation of two fatty-acyl coenzyme A substrates in long-chain olefin biosynthesis. Biochemical Journal 474(23), 3871-3886.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Jensen, M. R., B. R. Goblirsch, J. K. Christenson, M. A. Esler, F. A. Mohamed, L. P. Wackett and C. M. WilmotOleA Glu117 is key to condensation of two fatty-acyl coenzyme A substrates in long-chain olefin biosynthesisBiochemical Journal474(23), 3871-388610.1042/BCJ20170642
2017Ji, C., X. Zhang, X. Yan, M. Mostafizar Rahman, L. L. Prates and P. Yu. Bio-functions and molecular carbohydrate structure association study in forage with different source origins revealed using non-destructive vibrational molecular spectroscopy techniques. Spectrochimica Acta - Part A: Molecular and Biomolecular Spectroscopy 183, 260-266.Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramJi, C., X. Zhang, X. Yan, M. Mostafizar Rahman, L. L. Prates and P. YuBio-functions and molecular carbohydrate structure association study in forage with different source origins revealed using non-destructive vibrational molecular spectroscopy techniquesSpectrochimica Acta - Part A: Molecular and Biomolecular Spectroscopy183, 260-26610.1016/j.saa.2017.04.065
2017Juárez-Martínez, A. B., R. R. Sotelo-Mundo and E. Rudiño-Piñera. Crystal structure of a class-mu glutathione S-transferase from whiteleg shrimp Litopenaeus vannamei: structural changes in the xenobiotic binding H-site may alter the spectra of molecules bound. Journal of Biochemical and Molecular Toxicology 31(2).Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Juárez-Martínez, A. B., R. R. Sotelo-Mundo and E. Rudiño-PiñeraCrystal structure of a class-mu glutathione S-transferase from whiteleg shrimp Litopenaeus vannamei: structural changes in the xenobiotic binding H-site may alter the spectra of molecules boundJournal of Biochemical and Molecular Toxicology31(2)10.1002/jbt.21838
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2017Kang, J. H., S. Wang, Z. Shi, W. Zhao, E. Yablonovitch and F. Wang. Goos-Hänchen Shift and Even-Odd Peak Oscillations in Edge-Reflections of Surface Polaritons in Atomically Thin Crystals. Nano Letters 17(3), 1768-1774.Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramSynchrotron Infrared Hyperspectral ImagingKang, J. H., S. Wang, Z. Shi, W. Zhao, E. Yablonovitch and F. WangGoos-Hänchen Shift and Even-Odd Peak Oscillations in Edge-Reflections of Surface Polaritons in Atomically Thin CrystalsNano Letters17(3), 1768-177410.1021/acs.nanolett.6b05077
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2017Khorasani-Motlagh, M., M. J. Lacasse and D. B. Zamble. High-affinity metal binding by the Escherichia coli [NiFe]-hydrogenase accessory protein HypB is selectively modulated by SlyD. Metallomics 9(5), 482-493.Stanford Synchrotron Radiation LightsourceKhorasani-Motlagh, M., M. J. Lacasse and D. B. ZambleHigh-affinity metal binding by the Escherichia coli [NiFe]-hydrogenase accessory protein HypB is selectively modulated by SlyDMetallomics9(5), 482-49310.1039/c7mt00037e
2017Koh, M., F. Nasertorabi, G. W. Han, R. C. Stevens and P. G. Schultz. Generation of an Orthogonal Protein-Protein Interface with a Noncanonical Amino Acid. Journal of the American Chemical Society 139(16), 5728-5731.Stanford Synchrotron Radiation LightsourceKoh, M., F. Nasertorabi, G. W. Han, R. C. Stevens and P. G. SchultzGeneration of an Orthogonal Protein-Protein Interface with a Noncanonical Amino AcidJournal of the American Chemical Society139(16), 5728-573110.1021/jacs.7b02273
2017Kohler, A.C., M.J.L. Mills, P.D. Adams, B.A. Simmons, and K.L. Sale. Structure of aryl O-demethylase offers molecular insight into a catalytic tyrosine-dependent mechanism. Proceedings of the National Academy of Sciences of the United States of America  114(16) E3205-E3214.ALSStructurally Integrated Biology for the Life SciencesX-ray Macromolecular Crystallography (MX)Kohler, A.C., M.J.L. Mills, P.D. Adams, B.A. Simmons, and K.L. SaleStructure of aryl O-demethylase offers molecular insight into a catalytic tyrosine-dependent mechanismProceedings of the National Academy of Sciences of the United States of America114(16) E3205-E321410.1073/pnas.1619263114(related highlight)
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2017Kuatsjah, E., A. C. K. Chan, M. J. Kobylarz, M. E. P. Murphy and L. D. Eltis. The bacterial meta-cleavage hydrolase LigY belongs to the amidohydrolase superfamily, not to the α/β-hydrolase superfamily. Journal of Biological Chemistry 292(44), 18290-18302.Stanford Synchrotron Radiation LightsourceKuatsjah, E., A. C. K. Chan, M. J. Kobylarz, M. E. P. Murphy and L. D. EltisThe bacterial meta-cleavage hydrolase LigY belongs to the amidohydrolase superfamily, not to the α/β-hydrolase superfamilyJournal of Biological Chemistry292(44), 18290-1830210.1074/jbc.M117.797696
2017Le Dévédec, F., S. Her, K. Vogtt, A. Won, X. Li, G. Beaucage, C. Yip and C. Allen. Drug governs the morphology of polyalkylated block copolymer aggregates. Nanoscale 9(7), 2417-2423.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Le Dévédec, F., S. Her, K. Vogtt, A. Won, X. Li, G. Beaucage, C. Yip and C. AllenDrug governs the morphology of polyalkylated block copolymer aggregatesNanoscale9(7), 2417-242310.1039/c6nr08215g
2017Lee, C., J. Guo, W. Zeng, S. Kim, J. She, C. Cang, D. Ren and Y. Jiang. The lysosomal potassium channel TMEM175 adopts a novel tetrameric architecture. Nature 547(7664), 472-475.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Lee, C., J. Guo, W. Zeng, S. Kim, J. She, C. Cang, D. Ren and Y. JiangThe lysosomal potassium channel TMEM175 adopts a novel tetrameric architectureNature547(7664), 472-47510.1038/nature23269
2017Lee, E. Y., M. W. Lee, B. M. Fulan, A. L. Ferguson and G. C. L. Wong. What can machine learning do for antimicrobial peptides, and what can antimicrobial peptides do for machine learning? Interface Focus 7(6).Stanford Synchrotron Radiation LightsourceLee, E. Y., M. W. Lee, B. M. Fulan, A. L. Ferguson and G. C. L. WongWhat can machine learning do for antimicrobial peptides, and what can antimicrobial peptides do for machine learning?Interface Focus7(6), 10.1098/rsfs.2016.0153
2017Lee, M. W., E. Y. Lee, G. H. Lai, N. W. Kennedy, A. E. Posey, W. Xian, A. L. Ferguson, R. B. Hill and G. C. L. Wong. Molecular Motor Dnm1 Synergistically Induces Membrane Curvature to Facilitate Mitochondrial Fission. ACS Central Science 3(11), 1156-1167.Stanford Synchrotron Radiation LightsourceLee, M. W., E. Y. Lee, G. H. Lai, N. W. Kennedy, A. E. Posey, W. Xian, A. L. Ferguson, R. B. Hill and G. C. L. WongMolecular Motor Dnm1 Synergistically Induces Membrane Curvature to Facilitate Mitochondrial FissionACS Central Science3(11), 1156-116710.1021/acscentsci.7b00338
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2017Lee, S. G. and J. M. Jez. Conformational changes in the di-domain structure of Arabidopsis phosphoethanolamine methyltransferase leads to active-site formation. Journal of Biological Chemistry 292(52), 21690-21702.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Lee, S. G. and J. M. JezConformational changes in the di-domain structure of Arabidopsis phosphoethanolamine methyltransferase leads to active-site formationJournal of Biological Chemistry292(52), 21690-2170210.1074/jbc.RA117.000106
2017Lei, Y., A. Hannoufa and P. Yu. The use of gene modification and advanced molecular structure analyses towards improving alfalfa forage. International Journal of Molecular Sciences 18(2).Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramSynchrotron Infrared Hyperspectral ImagingLei, Y., A. Hannoufa and P. YuThe use of gene modification and advanced molecular structure analyses towards improving alfalfa forageInternational Journal of Molecular Sciences18(2)10.3390/ijms18020298
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2017Lin, Y. R., N. Koga, S. M. Vorobiev and D. Baker. Cyclic oligomer design with de novo αβ-proteins. Protein Science 26(11), 2187-2194.Advanced Light SourceStructurally Integrated Biology for the Life SciencesLin, Y. R., N. Koga, S. M. Vorobiev and D. BakerCyclic oligomer design with de novo αβ-proteinsProtein Science26(11), 2187-219410.1002/pro.3270
2017Lind, G. E., T. C. Mou, L. Tamborini, M. G. Pomper, C. De Micheli, P. Conti, A. Pinto and K. B. Hansen. Structural basis of subunit selectivity for competitive NMDA receptor antagonists with preference for GluN2A over GluN2B subunits. Proceedings of the National Academy of Sciences of the United States of America 114(33), E6942-E6951.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Lind, G. E., T. C. Mou, L. Tamborini, M. G. Pomper, C. De Micheli, P. Conti, A. Pinto and K. B. HansenStructural basis of subunit selectivity for competitive NMDA receptor antagonists with preference for GluN2A over GluN2B subunitsProceedings of the National Academy of Sciences of the United States of America114(33), E6942-E695110.1073/pnas.1707752114
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2017Lu, J., R. A. Harrison, L. Li, M. Zeng, S. Gondi, D. Scott, N. S. Gray, J. R. Engen and K. D. Westover. KRAS G12C Drug Development: Discrimination between Switch II Pocket Configurations Using Hydrogen/Deuterium-Exchange Mass Spectrometry. Structure 25(9), 1442-1448.e3.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Lu, J., R. A. Harrison, L. Li, M. Zeng, S. Gondi, D. Scott, N. S. Gray, J. R. Engen and K. D. WestoverKRAS G12C Drug Development: Discrimination between Switch II Pocket Configurations Using Hydrogen/Deuterium-Exchange Mass SpectrometryStructure25(9), 1442-1448.e310.1016/j.str.2017.07.003
2017Lu, L., R. Xie, T. Liu, H. Wang, D. Hou, Y. Du, Z. He, X. Yang, H. Sun and S. Tian. Spatial imaging and speciation of Cu in rice (Oryza sativa L.), roots using synchrotron-based X-ray microfluorescence and X-ray absorption spectroscopy. Chemosphere 175, 356-364.Stanford Synchrotron Radiation LightsourceLu, L., R. Xie, T. Liu, H. Wang, D. Hou, Y. Du, Z. He, X. Yang, H. Sun and S. TianSpatial imaging and speciation of Cu in rice (Oryza sativa L.), roots using synchrotron-based X-ray microfluorescence and X-ray absorption spectroscopyChemosphere175, 356-36410.1016/j.chemosphere.2017.02.082
2017Lubner, C. E., D. P. Jennings, D. W. Mulder, G. J. Schut, O. A. Zadvornyy, J. P. Hoben, M. Tokmina-Lukaszewska, L. Berry, D. M. Nguyen, G. L. Lipscomb, B. Bothner, A. K. Jones, A. F. Miller, P. W. King, M. W. W. Adams and J. W. Peters. Mechanistic insights into energy conservation by flavin-based electron bifurcation. Nature Chemical Biology 13(6), 655-659.Stanford Synchrotron Radiation LightsourceLubner, C. E., D. P. Jennings, D. W. Mulder, G. J. Schut, O. A. Zadvornyy, J. P. Hoben, M. Tokmina-Lukaszewska, L. Berry, D. M. Nguyen, G. L. Lipscomb, B. Bothner, A. K. Jones, A. F. Miller, P. W. King, M. W. W. Adams and J. W. PetersMechanistic insights into energy conservation by flavin-based electron bifurcationNature Chemical Biology13(6), 655-65910.1038/nchembio.2348
2017Mahalingan, K. K., S. Baskaran, A. A. Depaoli-Roach, P. J. Roach and T. D. Hurley. Redox switch for the inhibited state of yeast glycogen synthase mimics regulation by phosphorylation. Biochemistry 56(1), 179-188.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Mahalingan, K. K., S. Baskaran, A. A. Depaoli-Roach, P. J. Roach and T. D. HurleyRedox switch for the inhibited state of yeast glycogen synthase mimics regulation by phosphorylationBiochemistry56(1), 179-18810.1021/acs.biochem.6b00884
2017Makarem, M., D. Sawada, H. M. O'Neill, C. M. Lee, K. Kafle, Y. B. Park, A. Mittal and S. H. Kim. Dependence of Sum Frequency Generation (SFG), Spectral Features on the Mesoscale Arrangement of SFG-Active Crystalline Domains Interspersed in SFG-Inactive Matrix: A Case Study with Cellulose in Uniaxially Aligned Control Samples and Alkali-Treated Secondary Cell Walls of Plants. Journal of Physical Chemistry C 121(18), 10249-10257.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologyMakarem, M., D. Sawada, H. M. O'Neill, C. M. Lee, K. Kafle, Y. B. Park, A. Mittal and S. H. KimDependence of Sum Frequency Generation (SFG), Spectral Features on the Mesoscale Arrangement of SFG-Active Crystalline Domains Interspersed in SFG-Inactive Matrix: A Case Study with Cellulose in Uniaxially Aligned Control Samples and Alkali-Treated Secondary Cell Walls of PlantsJournal of Physical Chemistry C121(18), 10249-1025710.1021/acs.jpcc.7b02770
2017Mara, M. W., R. G. Hadt, M. E. Reinhard, T. Kroll, H. Lim, R. W. Hartsock, R. Alonso-Mori, M. Chollet, J. M. Glownia, S. Nelson, D. Sokaras, K. Kunnus, K. O. Hodgson, B. Hedman, U. Bergmann, K. J. Gaffney and E. I. Solomon. Metalloprotein entatic control of ligand-metal bonds quantified by ultrafast x-ray spectroscopy. Science 356(6344), 1276-1280.Stanford Synchrotron Radiation LightsourceMara, M. W., R. G. Hadt, M. E. Reinhard, T. Kroll, H. Lim, R. W. Hartsock, R. Alonso-Mori, M. Chollet, J. M. Glownia, S. Nelson, D. Sokaras, K. Kunnus, K. O. Hodgson, B. Hedman, U. Bergmann, K. J. Gaffney and E. I. SolomonMetalloprotein entatic control of ligand-metal bonds quantified by ultrafast x-ray spectroscopyScience356(6344), 1276-128010.1126/science.aam6203
2017Martinie, R. J., C. J. Pollock, M. L. Matthews, J. M. Bollinger, C. Krebs and A. Silakov. Vanadyl as a Stable Structural Mimic of Reactive Ferryl Intermediates in Mononuclear Nonheme-Iron Enzymes. Inorganic Chemistry 56(21), 13382-13389.Stanford Synchrotron Radiation LightsourceMartinie, R. J., C. J. Pollock, M. L. Matthews, J. M. Bollinger, C. Krebs and A. SilakovVanadyl as a Stable Structural Mimic of Reactive Ferryl Intermediates in Mononuclear Nonheme-Iron EnzymesInorganic Chemistry56(21), 13382-1338910.1021/acs.inorgchem.7b02113
2017Masson, A., J. T. O’Brien, E. R. Williams and H. Y. N. Holman. Towards Integrating Synchrotron FTIR Microscopy with Mass Spectrometry at the Berkeley Synchrotron Infrared Structural Biology (BSISB), Program. Synchrotron Radiation News 30(4), 17-23.Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramSynchrotron Infrared Hyperspectral ImagingMasson, A., J. T. O’Brien, E. R. Williams and H. Y. N. HolmanTowards Integrating Synchrotron FTIR Microscopy with Mass Spectrometry at the Berkeley Synchrotron Infrared Structural Biology (BSISB), ProgramSynchrotron Radiation News30(4), 17-2310.1080/08940886.2017.1338418
2017Mathews, I. I., K. Allison, T. Robbins, A. Y. Lyubimov, M. Uervirojnangkoorn, A. T. Brunger, C. Khosla, H. DeMirci, S. E. McPhillips, M. Hollenbeck, M. Soltis and A. E. Cohen. The Conformational Flexibility of the Acyltransferase from the Disorazole Polyketide Synthase Is Revealed by an X-ray Free-Electron Laser Using a Roomerature Sample Delivery Method for Serial Crystallography. Biochemistry 56(36), 4751-4756.Stanford Synchrotron Radiation LightsourceMathews, I. I., K. Allison, T. Robbins, A. Y. Lyubimov, M. Uervirojnangkoorn, A. T. Brunger, C. Khosla, H. DeMirci, S. E. McPhillips, M. Hollenbeck, M. Soltis and A. E. CohenThe Conformational Flexibility of the Acyltransferase from the Disorazole Polyketide Synthase Is Revealed by an X-ray Free-Electron Laser Using a Roomerature Sample Delivery Method for Serial CrystallographyBiochemistry56(36), 4751-475610.1021/acs.biochem.7b00711
2017Mei, X., J. Alvarez, A. Bon Ramos, U. Samanta, D. Iwata-Reuyl and M. A. Swairjo. Crystal structure of the archaeosine synthase QueF-like—Insights into amidino transfer and tRNA recognition by the tunnel fold. Proteins: Structure, Function and Bioinformatics 85(1), 103-116.Stanford Synchrotron Radiation LightsourceMei, X., J. Alvarez, A. Bon Ramos, U. Samanta, D. Iwata-Reuyl and M. A. SwairjoCrystal structure of the archaeosine synthase QueF-like—Insights into amidino transfer and tRNA recognition by the tunnel foldProteins: Structure, Function and Bioinformatics85(1), 103-11610.1002/prot.25202
2017Michalska, K., G.C. Gucinski, F. Garza-Sanchez, P.M. Johnson, L.M. Stols, W.H. Eschenfeldt, G. Babnigg, D.A. Low, C.W. Goulding, A. Joachimiak, and C.S. Hayes. Structure of a novel antibacterial toxin that exploits elongation factor Tu to cleave specific transfer RNAs. Nucleic Acids Research 45(17) 10306-10320.APSStructural Biology Center X-ray Macromolecular Crystallography (MX)Michalska, K., G.C. Gucinski, F. Garza-Sanchez, P.M. Johnson, L.M. Stols, W.H. Eschenfeldt, G. Babnigg, D.A. Low, C.W. Goulding, A. Joachimiak, and C.S. HayesStructure of a novel antibacterial toxin that exploits elongation factor Tu to cleave specific transfer RNAsNucleic Acids Res45(17) 10306-1032010.1093/nar/gkx700(related highlight)
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2017Moissl-Eichinger, C., A.J. Probst, G. Birarda, A. Auerbach, K. Koskinen, P. Wolf, and H.N. Holman. Human age and skin physiology shape diversity and abundance of Archaea on skin. Sci Rep 7(1) 4039ALSBerkeley Synchrotron Infrared Structural Biology Imaging ProgramSynchrotron Infrared Hyperspectral ImagingMoissl-Eichinger, C., A.J. Probst, G. Birarda, A. Auerbach, K. Koskinen, P. Wolf, and H.N. HolmanHuman age and skin physiology shape diversity and abundance of Archaea on skinSci Rep7(1)403910.1038/s41598-017-04197-4(related highlight)
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2017Morrison, C. N., T. Spatzal and D. C. Rees. Reversible Protonated Resting State of the Nitrogenase Active Site. Journal of the American Chemical Society 139(31), 10856-10862.Stanford Synchrotron Radiation LightsourceMorrison, C. N., T. Spatzal and D. C. ReesReversible Protonated Resting State of the Nitrogenase Active SiteJournal of the American Chemical Society139(31), 10856-1086210.1021/jacs.7b05695
2017Mulero, M. C., D. B. Huang, H. Thien Nguyen, V. Y. F. Wang, Y. Li, T. Biswas and G. Ghosh. DNA-binding affinity and transcriptional activity of the RelA homodimer of nuclear factor κb are not correlated. Journal of Biological Chemistry 292(46), 18821-18830.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Mulero, M. C., D. B. Huang, H. Thien Nguyen, V. Y. F. Wang, Y. Li, T. Biswas and G. GhoshDNA-binding affinity and transcriptional activity of the RelA homodimer of nuclear factor κb are not correlatedJournal of Biological Chemistry292(46), 18821-1883010.1074/jbc.M117.813980
2017Mus, F., B.J. Eilers, A.B. Alleman, B.V. Kabasakal, J.N. Wells, J.W. Murray, B.P. Nocek, J.L. DuBois, and J.W. Peters. Structural Basis for the Mechanism of ATP-Dependent Acetone Carboxylation. Scientific Report 7(1) 7234.APS, SSRLStructural Biology CenterX-ray Macromolecular Crystallography (MX)Mus, F., B.J. Eilers, A.B. Alleman, B.V. Kabasakal, J.N. Wells, J.W. Murray, B.P. Nocek, J.L. DuBois, and J.W. PetersStructural Basis for the Mechanism of ATP-Dependent Acetone CarboxylationSci Rep7(1) 723410.1038/s41598-017-06973-8(related highlight)
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2017O'Dell, W. B., P. D. Swartz, K. L. Weiss and F. Meilleur. Crystallization of a fungal lytic polysaccharide monooxygenase expressed from glycoengineered Pichia pastoris for X-ray and neutron diffraction. Acta Crystallographica Section:F Structural Biology Communications 73(2), 70-78.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologyO'Dell, W. B., P. D. Swartz, K. L. Weiss and F. MeilleurCrystallization of a fungal lytic polysaccharide monooxygenase expressed from glycoengineered Pichia pastoris for X-ray and neutron diffractionActa Crystallographica Section:F Structural Biology Communications73(2), 70-7810.1107/S2053230X16020318
2017O'Dell, W.B., P.K. Agarwal, and F. Meilleur. Oxygen Activation at the Active Site of a Fungal Lytic Polysaccharide Monooxygenase. Angewandte Chemie - International Edition 56(3) 767-770.APS, SNS-HFIRX-ray Macromolecular Crystallography (MC), Neutron Macromolecular Crystallography (MX)O'Dell, W.B., P.K. Agarwal, and F. MeilleurOxygen Activation at the Active Site of a Fungal Lytic Polysaccharide MonooxygenaseAngewandte Chemie - International Edition56(3) 767-77010.1002/anie.201610502(related highlight)
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2017Pareja-Rivera, C., M. Cuellar-Cruz, N. Esturau-Escofet, N. Demitri, M. Polentarutti, V. Stojanoff and A. Moreno. Recent advances in the understanding of the influence of electric and magnetic fields on protein crystal growth. Crystal Growth and Design 17(1), 135-145.Stanford Synchrotron Radiation LightsourcePareja-Rivera, C., M. Cuellar-Cruz, N. Esturau-Escofet, N. Demitri, M. Polentarutti, V. Stojanoff and A. MorenoRecent advances in the understanding of the influence of electric and magnetic fields on protein crystal growthCrystal Growth and Design17(1), 135-14510.1021/acs.cgd.6b01362
2017Pelt, D. M. and J. A. Sethian. A mixed-scale dense convolutional neural network for image analysis. Proceedings of the National Academy of Sciences of the United States of America 115(2), 254-259.Advanced Light SourceNational Center for X-Ray Tomography Soft X-ray TomographyPelt, D. M. and J. A. SethianA mixed-scale dense convolutional neural network for image analysisProceedings of the National Academy of Sciences of the United States of America115(2), 254-25910.1073/pnas.1715832114
2017Perticaroli, S., G. Ehlers, C.B. Stanley, E. Mamontov, H. O'Neill, Q. Zhang, X. Cheng, D.A. Myles, J. Katsaras, and J.D. Nickels. Description of Hydration Water in Protein (Green Fluorescent Protein) Solution. Journal of the American Chemical Society 139(3) 1098-1105.SNS-HFIRCenter for Structural Molecular Biology Small-Angle Neutron Scattering (SANS)Perticaroli, S., G. Ehlers, C.B. Stanley, E. Mamontov, H. O'Neill, Q. Zhang, X. Cheng, D.A. Myles, J. Katsaras, and J.D. NickelsDescription of Hydration Water in Protein (Green Fluorescent Protein) SolutionJournal of the American Chemical Society139(3) 1098-110510.1021/jacs.6b08845(related highlight)
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2017Pingali, S. V., V. S. Urban, W. T. Heller, J. McGaughey, H. O'Neill, M. B. Foston, H. Li, C. E. Wyman, D. A. Myles, P. Langan, A. Ragauskas, B. Davison and B. R. Evans. Understanding Multiscale Structural Changes during Dilute Acid Pretreatment of Switchgrass and Poplar. ACS Sustainable Chemistry and Engineering 5(1), 426-435.Spallation Neutron Source/High Flux Isotope ReactorSpallation Neutron Source/High Flux Isotope ReactorPingali, S. V., V. S. Urban, W. T. Heller, J. McGaughey, H. O'Neill, M. B. Foston, H. Li, C. E. Wyman, D. A. Myles, P. Langan, A. Ragauskas, B. Davison and B. R. EvansUnderstanding Multiscale Structural Changes during Dilute Acid Pretreatment of Switchgrass and PoplarACS Sustainable Chemistry and Engineering5(1), 426-43510.1021/acssuschemeng.6b01803
2017Pitsawong, W., C. A. Haynes, R. L. Koder, D. W. Rodgers and A. F. Miller. Mechanism-Informed Refinement Reveals Altered Substrate-Binding Mode for Catalytically Competent Nitroreductase. Structure 25(7), 978-987.e4.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Pitsawong, W., C. A. Haynes, R. L. Koder, D. W. Rodgers and A. F. MillerMechanism-Informed Refinement Reveals Altered Substrate-Binding Mode for Catalytically Competent NitroreductaseStructure25(7), 978-987.e410.1016/j.str.2017.05.002
2017Ponomarenko, O., P. F. La Porte, S. P. Singh, G. Langan, D. E. B. Fleming, J. E. Spallholz, M. Alauddin, H. Ahsan, S. Ahmed, J. Gailer, G. N. George and I. J. Pickering. Selenium-mediated arsenic excretion in mammals: A synchrotron-based study of whole-body distribution and tissue-specific chemistry. Metallomics 9(11), 1585-1595.Stanford Synchrotron Radiation LightsourcePonomarenko, O., P. F. La Porte, S. P. Singh, G. Langan, D. E. B. Fleming, J. E. Spallholz, M. Alauddin, H. Ahsan, S. Ahmed, J. Gailer, G. N. George and I. J. PickeringSelenium-mediated arsenic excretion in mammals: A synchrotron-based study of whole-body distribution and tissue-specific chemistryMetallomics9(11), 1585-159510.1039/c7mt00201g
2017Popovic, A., T. Hai, A. Tchigvintsev, M. Hajighasemi, B. Nocek, A. N. Khusnutdinova, G. Brown, J. Glinos, R. Flick, T. Skarina, T. N. Chernikova, V. Yim, T. Brüls, D. L. Paslier, M. M. Yakimov, A. Joachimiak, M. Ferrer, O. V. Golyshina, A. Savchenko, P. N. Golyshin and A. F. Yakunin. Activity screening of environmental metagenomic libraries reveals novel carboxylesterase families. Scientific Reports 7.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Popovic, A., T. Hai, A. Tchigvintsev, M. Hajighasemi, B. Nocek, A. N. Khusnutdinova, G. Brown, J. Glinos, R. Flick, T. Skarina, T. N. Chernikova, V. Yim, T. Brüls, D. L. Paslier, M. M. Yakimov, A. Joachimiak, M. Ferrer, O. V. Golyshina, A. Savchenko, P. N. Golyshin and A. F. YakuninActivity screening of environmental metagenomic libraries reveals novel carboxylesterase familiesScientific Reports710.1038/srep44103
2017Prates, L. L. and P. Yu. Recent research on inherent molecular structure, physiochemical properties, and bio-functions of food and feed-type Avena sativa oats and processing-induced changes revealed with molecular microspectroscopic techniques. Applied Spectroscopy Reviews 52(10), 850-867.Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramPrates, L. L. and P. YuRecent research on inherent molecular structure, physiochemical properties, and bio-functions of food and feed-type Avena sativa oats and processing-induced changes revealed with molecular microspectroscopic techniquesApplied Spectroscopy Reviews52(10), 850-86710.1080/05704928.2017.1331447
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2017Rahman, M. M. and P. Yu. Molecular basis of structural make-up of feeds in relation to nutrient absorption in ruminants, revealed with advanced molecular spectroscopy: A review on techniques and models. Applied Spectroscopy Reviews 52(7), 653-673.Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramRahman, M. M. and P. YuMolecular basis of structural make-up of feeds in relation to nutrient absorption in ruminants, revealed with advanced molecular spectroscopy: A review on techniques and modelsApplied Spectroscopy Reviews52(7), 653-67310.1080/05704928.2017.1295385
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2017Reiss, C. W., Y. Xiong and S. A. Strobel. Structural Basis for Ligand Binding to the Guanidine-I Riboswitch. Structure 25(1), 195-202.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Reiss, C. W., Y. Xiong and S. A. StrobelStructural Basis for Ligand Binding to the Guanidine-I RiboswitchStructure25(1), 195-20210.1016/j.str.2016.11.020
2017Rice, D. B., G. B. Wijeratne and T. A. Jackson. Mn K-edge X-ray absorption studies of mononuclear Mn(III), –hydroxo complexes. Journal of Biological Inorganic Chemistry 22(8), 1281-1293.Stanford Synchrotron Radiation LightsourceRice, D. B., G. B. Wijeratne and T. A. JacksonMn K-edge X-ray absorption studies of mononuclear Mn(III), –hydroxo complexesJournal of Biological Inorganic Chemistry22(8), 1281-129310.1007/s00775-017-1501-0
2017Richter, A. G., S. A. Dergunov, M. D. Kim, S. N. Shmakov, S. V. Pingali, V. S. Urban, Y. Liu and E. Pinkhassik. Unraveling the Single-Nanometer Thickness of Shells of Vesicle-Templated Polymer Nanocapsules. Journal of Physical Chemistry Letters 8(15), 3630-3636.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Richter, A. G., S. A. Dergunov, M. D. Kim, S. N. Shmakov, S. V. Pingali, V. S. Urban, Y. Liu and E. PinkhassikUnraveling the Single-Nanometer Thickness of Shells of Vesicle-Templated Polymer NanocapsulesJournal of Physical Chemistry Letters8(15), 3630-363610.1021/acs.jpclett.7b01149
2017Riegert, A. S., D. P. Chantigian, J. B. Thoden, P. A. Tipton and H. M. Holden. Biochemical Characterization of WbkC, an N-Formyltransferase from Brucella melitensis. Biochemistry 56(28), 3658-3668.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Riegert, A. S., D. P. Chantigian, J. B. Thoden, P. A. Tipton and H. M. HoldenBiochemical Characterization of WbkC, an N-Formyltransferase from Brucella melitensisBiochemistry56(28), 3658-366810.1021/acs.biochem.7b00494
2017Rocco, C. J., K. M. Wetterhorn, G. S. Garvey, I. Rayment and J. C. Escalante-Semerena. The PrpF protein of Shewanella oneidensis MR-1 catalyzes the isomerization of 2-methyl-cis-aconitate during the catabolism of propionate via the AcnD-dependent 2-methylcitric acid cycle. PLoS ONE 12(11).Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Rocco, C. J., K. M. Wetterhorn, G. S. Garvey, I. Rayment and J. C. Escalante-SemerenaThe PrpF protein of Shewanella oneidensis MR-1 catalyzes the isomerization of 2-methyl-cis-aconitate during the catabolism of propionate via the AcnD-dependent 2-methylcitric acid cyclePLoS ONE12(11), 10.1371/journal.pone.0188130
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2017Russi, S., A. González, L. R. Kenner, D. A. Keedy, J. S. Fraser and H. Van Den Bedem. Conformational variation of proteins at room temperature is not dominated by radiation damage. Journal of Synchrotron Radiation 24(1), 73-82.Stanford Synchrotron Radiation LightsourceRussi, S., A. González, L. R. Kenner, D. A. Keedy, J. S. Fraser and H. Van Den BedemConformational variation of proteins at room temperature is not dominated by radiation damageJournal of Synchrotron Radiation24(1), 73-8210.1107/S1600577516017343
2017Ruszkowski, M. and Z. Dauter. Structures of Medicago truncatula L-Histidinol Dehydrogenase Show Rearrangements Required for NAD+ Binding and the Cofactor Positioned to Accept a Hydride. Scientific Reports 7(1).Advanced Photon SourceStructural Biology CenterStructural Biology Center X-ray Macromolecular Crystallography (MX)Ruszkowski, M. and Z. DauterStructures of Medicago truncatula L-Histidinol Dehydrogenase Show Rearrangements Required for NAD+ Binding and the Cofactor Positioned to Accept a HydrideScientific Reports7(1)10.1038/s41598-017-10859-0
2017Sachleben, J. R., A. N. Adhikari, G. Gawlak, R. J. Hoey, G. Liu, A. Joachimiak, G. T. Montelione, T. R. Sosnick and S. Koide. Aromatic claw: A new fold with high aromatic content that evades structural prediction. Protein Science 26(2), 208-217.Advanced Photon SourceStructural Biology CenterStructural Biology Center X-ray Macromolecular Crystallography (MX)Sachleben, J. R., A. N. Adhikari, G. Gawlak, R. J. Hoey, G. Liu, A. Joachimiak, G. T. Montelione, T. R. Sosnick and S. KoideAromatic claw: A new fold with high aromatic content that evades structural predictionProtein Science26(2), 208-21710.1002/pro.3069
2017Sandi, M. J., C. B. Marshall, M. Balan, E. Coyaud, M. Zhou, D. M. Monson, N. Ishiyama, A. A. Chandrakumar, J. La Rose, A. L. Couzens, A. C. Gingras, B. Raught, W. Xu, M. Ikura, D. K. Morrison and R. Rottapel. MARK3-mediated phosphorylation of ARHGEF2 couples microtubules to the actin cytoskeleton to establish cell polarity. Science Signaling 10(503), .DOI: 10.1126/scisignal.aan3286Advanced Photon SourceStructural Biology CenterStructural Biology Center X-ray Macromolecular Crystallography (MX)Sandi, M. J., C. B. Marshall, M. Balan, E. Coyaud, M. Zhou, D. M. Monson, N. Ishiyama, A. A. Chandrakumar, J. La Rose, A. L. Couzens, A. C. Gingras, B. Raught, W. Xu, M. Ikura, D. K. Morrison and R. RottapelMARK3-mediated phosphorylation of ARHGEF2 couples microtubules to the actin cytoskeleton to establish cell polarityScience Signaling10(503), 10.1126/scisignal.aan3286
2017Schenck, C.A., C.K. Holland, M.R. Schneider, Y. Men, S.G. Lee, J.M. Jez, and H.A. Maeda. Molecular basis of the evolution of alternative tyrosine biosynthetic routes in plants. Nature Chemical Biology 13(9) 1029-1035.APSStructural Biology Center X-ray Macromolecular Crystallography (MX)Schenck, C.A., C.K. Holland, M.R. Schneider, Y. Men, S.G. Lee, J.M. Jez, and H.A. MaedaMolecular basis of the evolution of alternative tyrosine biosynthetic routes in plantsNature Chemical Biology13(9) 1029-103510.1038/nchembio.2414(related highlight)
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2017Seo, A. Y., P. W. Lau, D. Feliciano, P. Sengupta, M. A. Le Gros, B. Cinquin, C. A. Larabell and J. Lippincott-Schwartz. AMPK and vacuole-associated Atg14p orchestrate μ-lipophagy for energy production and long-term survival under glucose starvation. eLife 6.Advanced Light SourceNational Center for X-Ray Tomography Soft X-ray TomographySeo, A. Y., P. W. Lau, D. Feliciano, P. Sengupta, M. A. Le Gros, B. Cinquin, C. A. Larabell and J. Lippincott-SchwartzAMPK and vacuole-associated Atg14p orchestrate μ-lipophagy for energy production and long-term survival under glucose starvationeLife610.7554/eLife.21690
2017Simmons, C. R., F. Zhang, T. MacCulloch, N. Fahmi, N. Stephanopoulos, Y. Liu, N. C. Seeman and H. Yan. Tuning the Cavity Size and Chirality of Self-Assembling 3D DNA Crystals. Journal of the American Chemical Society 139(32), 11254-11260.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Simmons, C. R., F. Zhang, T. MacCulloch, N. Fahmi, N. Stephanopoulos, Y. Liu, N. C. Seeman and H. YanTuning the Cavity Size and Chirality of Self-Assembling 3D DNA CrystalsJournal of the American Chemical Society139(32), 11254-1126010.1021/jacs.7b06485
2017Singh, I., M. J. Kim, R. W. Molt, S. Hoshika, S. A. Benner and M. M. Georgiadis. Structure and Biophysics for a Six Letter DNA Alphabet that Includes Imidazo[1,2-a]-1,3,5-triazine-2(8H), -4(3H), -dione (X), and 2,4-Diaminopyrimidine (K). ACS Synthetic Biology 6(11), 2118-2129.Advanced Photon SourceStructural Biology CenterSingh, I., M. J. Kim, R. W. Molt, S. Hoshika, S. A. Benner and M. M. GeorgiadisStructure and Biophysics for a Six Letter DNA Alphabet that Includes Imidazo[1,2-a]-1,3,5-triazine-2(8H), -4(3H), -dione (X), and 2,4-Diaminopyrimidine (K).ACS Synthetic Biology6(11), 2118-212910.1021/acssynbio.7b00150
2017Sneeden, E. Y., M. J. Hackett, J. J. H. Cotelesage, R. C. Prince, M. Barney, K. Goto, E. Block, I. J. Pickering and G. N. George. Photochemically Generated Thiyl Free Radicals Observed by X-ray Absorption Spectroscopy. Journal of the American Chemical Society 139(33), 11519-11526.Stanford Synchrotron Radiation LightsourceSneeden, E. Y., M. J. Hackett, J. J. H. Cotelesage, R. C. Prince, M. Barney, K. Goto, E. Block, I. J. Pickering and G. N. GeorgePhotochemically Generated Thiyl Free Radicals Observed by X-ray Absorption SpectroscopyJournal of the American Chemical Society139(33), 11519-1152610.1021/jacs.7b05116
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2017Spencer, R. K. and A. I. Hochbaum. The Phe-Ile Zipper: a specific interaction motif drives antiparallel coiled-coil hexamer formation. Biochemistry 56(40), 5300-5308.Advanced Light SourceStructurally Integrated Biology for the Life SciencesSpencer, R. K. and A. I. HochbaumThe Phe-Ile Zipper: a specific interaction motif drives antiparallel coiled-coil hexamer formationBiochemistry56(40), 5300-530810.1021/acs.biochem.7b00756
2017Sproules, S., A. A. Eagle, G. N. George, J. M. White and C. G. Young. Mononuclear Sulfido-Tungsten(V), Complexes: Completing the Tp*MEXY (M = Mo, W; E = O, S), Series. Inorganic Chemistry 56(9), 5189-5202.DOI: 10.1021/acs.inorgchem.7b00331Stanford Synchrotron Radiation LightsourceSproules, S., A. A. Eagle, G. N. George, J. M. White and C. G. YoungMononuclear Sulfido-Tungsten(V), Complexes: Completing the Tp*MEXY (M = Mo, W; E = O, S), SeriesInorganic Chemistry56(9), 5189-520210.1021/acs.inorgchem.7b00331
2017Sui, X., A. C. Weitz, E. R. Farquhar, M. Badiee, S. Banerjee, J. Von Lintig, G. P. Tochtrop, K. Palczewski, M. P. Hendrich and P. D. Kiser. Structure and spectroscopy of alkene-cleaving dioxygenases containing an atypically coordinated non-heme iron center. Biochemistry 56(22), 2836-2852.Stanford Synchrotron Radiation LightsourceSui, X., A. C. Weitz, E. R. Farquhar, M. Badiee, S. Banerjee, J. Von Lintig, G. P. Tochtrop, K. Palczewski, M. P. Hendrich and P. D. KiserStructure and spectroscopy of alkene-cleaving dioxygenases containing an atypically coordinated non-heme iron centerBiochemistry56(22), 2836-285210.1021/acs.biochem.7b00251
2017Sunden, F., I. Alsadhan, A. Lyubimov, T. Doukov, J. Swan and D. Herschlag. Differential catalytic promiscuity of the alkaline phosphatase superfamily bimetallo core reveals mechanistic features underlying enzyme evolution. Journal of Biological Chemistry 292(51), 20960-20974.Stanford Synchrotron Radiation LightsourceSunden, F., I. Alsadhan, A. Lyubimov, T. Doukov, J. Swan and D. HerschlagDifferential catalytic promiscuity of the alkaline phosphatase superfamily bimetallo core reveals mechanistic features underlying enzyme evolutionJournal of Biological Chemistry292(51), 20960-2097410.1074/jbc.M117.788240
2017Sutter, M., B. Greber, C. Aussignargues, and C.A. Kerfeld. Assembly principles and structure of a 6.5-MDa bacterial microcompartment shell. Science 356(6344) 1293-1297.SSRLStructural Molecular Biology ResourceX-ray Macromolecular Crystallography (MX)Sutter, M., B. Greber, C. Aussignargues, and C.A. KerfeldAssembly principles and structure of a 6.5-MDa bacterial microcompartment shellScience356(6344)1293-129710.1126/science.aan3289(feature story) (related highlight)
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2017Tan, K., B. L. Deatherage Kaiser, R. Wu, M. Cuff, Y. Fan, L. Bigelow, R. P. Jedrzejczak, J. N. Adkins, J. R. Cort, G. Babnigg and A. Joachimiak. Insights into PG-binding, conformational change, and dimerization of the OmpA C-terminal domains from Salmonella enterica serovar Typhimurium and Borrelia burgdorferi. Protein Science 26(9), 1738-1748.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Tan, K., B. L. Deatherage Kaiser, R. Wu, M. Cuff, Y. Fan, L. Bigelow, R. P. Jedrzejczak, J. N. Adkins, J. R. Cort, G. Babnigg and A. JoachimiakInsights into PG-binding, conformational change, and dimerization of the OmpA C-terminal domains from Salmonella enterica serovar Typhimurium and Borrelia burgdorferiProtein Science26(9), 1738-174810.1002/pro.3209
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2017Trewhella, J., A. P. Duff, D. Durand, F. Gabel, J. M. Guss, W. A. Hendrickson, G. L. Hura, D. A. Jacques, N. M. Kirby, A. H. Kwan, J. Pérez, L. Pollack, T. M. Ryan, A. Sali, D. Schneidman-Duhovny, T. Schwede, D. I. Svergun, M. Sugiyama, J. A. Tainer, P. Vachette, J. Westbrook and A. E. Whitten. 2017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: An update. Acta Crystallographica Section D: Structural Biology 73(9), 710-728.Advanced Light SourceStructurally Integrated Biology for the Life SciencesTrewhella, J., A. P. Duff, D. Durand, F. Gabel, J. M. Guss, W. A. Hendrickson, G. L. Hura, D. A. Jacques, N. M. Kirby, A. H. Kwan, J. Pérez, L. Pollack, T. M. Ryan, A. Sali, D. Schneidman-Duhovny, T. Schwede, D. I. Svergun, M. Sugiyama, J. A. Tainer, P. Vachette, J. Westbrook and A. E. Whitten2017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: An updateActa Crystallographica Section D: Structural Biology73(9), 710-72810.1107/S2059798317011597
2017Truong, P. T., E. M. Gale, S. P. Dzul, T. L. Stemmler and T. C. Harrop. Steric Enforcement about One Thiolate Donor Leads to New Oxidation Chemistry in a NiSOD Model Complex. Inorganic Chemistry 56(14), 7761-7780.Stanford Synchrotron Radiation LightsourceTruong, P. T., E. M. Gale, S. P. Dzul, T. L. Stemmler and T. C. HarropSteric Enforcement about One Thiolate Donor Leads to New Oxidation Chemistry in a NiSOD Model ComplexInorganic Chemistry56(14), 7761-778010.1021/acs.inorgchem.7b00485
2017Tu, X., J. A. Latham, V. J. Klema, R. L. Evans, C. Li, J. P. Klinman and C. M. Wilmot. Crystal structures reveal metal-binding plasticity at the metallo-β-lactamase active site of PqqB from Pseudomonas putida. Journal of Biological Inorganic Chemistry 22(7), 1089-1097.Advanced Photon SourceTu, X., J. A. Latham, V. J. Klema, R. L. Evans, C. Li, J. P. Klinman and C. M. WilmotCrystal structures reveal metal-binding plasticity at the metallo-β-lactamase active site of PqqB from Pseudomonas putidaJournal of Biological Inorganic Chemistry22(7), 1089-109710.1007/s00775-017-1486-8
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2017Usery, R. D., T. A. Enoki, S. P. Wickramasinghe, M. D. Weiner, W. C. Tsai, M. B. Kim, S. Wang, T. L. Torng, D. G. Ackerman, F. A. Heberle, J. Katsaras and G. W. Feigenson. Line Tension Controls Liquid-Disordered + Liquid-Ordered Domain Size Transition in Lipid Bilayers. Biophysical Journal 112(7), 1431-1443.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Usery, R. D., T. A. Enoki, S. P. Wickramasinghe, M. D. Weiner, W. C. Tsai, M. B. Kim, S. Wang, T. L. Torng, D. G. Ackerman, F. A. Heberle, J. Katsaras and G. W. FeigensonLine Tension Controls Liquid-Disordered + Liquid-Ordered Domain Size Transition in Lipid BilayersBiophysical Journal112(7), 1431-144310.1016/j.bpj.2017.02.033
2017Vaccaro, B. J., S. M. Clarkson, J. F. Holden, D. W. Lee, C. H. Wu, F. L. Poole, J. J. H. Cotelesage, M. J. Hackett, S. Mohebbi, J. Sun, H. Li, M. K. Johnson, G. N. George and M. W. W. Adams. Biological iron-sulfur storage in a thioferrateprotein nanoparticle. Nature Communications 8.Stanford Synchrotron Radiation LightsourceVaccaro, B. J., S. M. Clarkson, J. F. Holden, D. W. Lee, C. H. Wu, F. L. Poole, J. J. H. Cotelesage, M. J. Hackett, S. Mohebbi, J. Sun, H. Li, M. K. Johnson, G. N. George and M. W. W. AdamsBiological iron-sulfur storage in a thioferrateprotein nanoparticleNature Communications810.1038/ncomms16110
2017Vandavasi, V. G., P. S. Langan, K. L. Weiss, J. M. Parks, J. B. Cooper, S. L. Ginell and L. Coates. Active-site protonation states in an acyl-enzyme intermediate of a class A β-lactamase with a monobactam substrate. Antimicrobial Agents and Chemotherapy 61(1).Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Vandavasi, V. G., P. S. Langan, K. L. Weiss, J. M. Parks, J. B. Cooper, S. L. Ginell and L. CoatesActive-site protonation states in an acyl-enzyme intermediate of a class A β-lactamase with a monobactam substrateAntimicrobial Agents and Chemotherapy61(1)10.1128/AAC.01636-16
2017Victor, T., N. Delpratt, S. B. Cseke, L. M. Miller and L. J. Cseke. Imaging nutrient distribution in the rhizosphere using FTIR imaging. Analytical Chemistry 89(9), 4831-4837. Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramSynchrotron Infrared Hyperspectral ImagingVictor, T., N. Delpratt, S. B. Cseke, L. M. Miller and L. J. CsekeImaging nutrient distribution in the rhizosphere using FTIR imagingAnalytical Chemistry89(9), 4831-483710.1021/acs.analchem.6b04376
2017Viswanath, S., M. Bonomi, S. J. Kim, V. A. Klenchin, K. C. Taylor, K. C. Yabut, N. T. Umbreit, H. A. Van Epps, J. Meehl, M. H. Jones, D. Russel, J. A. Velazquez-Muriel, M. Winey, I. Rayment, T. N. Davis, A. Sali and E. G. Muller. The molecular architecture of the yeast spindle pole body core determined by Bayesian integrative modeling. Molecular Biology of the Cell 28(23), 3298-3314.Stanford Synchrotron Radiation LightsourceViswanath, S., M. Bonomi, S. J. Kim, V. A. Klenchin, K. C. Taylor, K. C. Yabut, N. T. Umbreit, H. A. Van Epps, J. Meehl, M. H. Jones, D. Russel, J. A. Velazquez-Muriel, M. Winey, I. Rayment, T. N. Davis, A. Sali and E. G. MullerThe molecular architecture of the yeast spindle pole body core determined by Bayesian integrative modelingMolecular Biology of the Cell28(23), 3298-331410.1091/mbc.E17-06-0397
2017Vogtt, K., G. Beaucage, M. Weaver and H. Jiang. Thermodynamic stability of worm-like micelle solutions. Soft Matter 13(36), 6068-6078.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering (SANS)Vogtt, K., G. Beaucage, M. Weaver and H. JiangThermodynamic stability of worm-like micelle solutionsSoft Matter13(36), 6068-607810.1039/c7sm01132f
2017Warelow, T. P., M. J. Pushie, J. J. H. Cotelesage, J. M. Santini and G. N. George. The active site structure and catalytic mechanism of arsenite oxidase. Scientific Reports 7(1).Stanford Synchrotron Radiation LightsourceWarelow, T. P., M. J. Pushie, J. J. H. Cotelesage, J. M. Santini and G. N. GeorgeThe active site structure and catalytic mechanism of arsenite oxidaseScientific Reports7(1)10.1038/s41598-017-01840-y
2017Warren, C., T. Matsui, J.M. Karp, T. Onikubo, S. Cahill, M. Brenowitz, D. Cowburn, M. Girvin, and D. Shechter. 2017. "Dynamic Intramolecular Regulation of the Histone Chaperone Nucleoplasmin Controls Histone Binding and Release," Nature Communications 8(1) 2215.SSRLStructural Molecular Biology ResourceSolution X-ray Scattering (SAXS)Warren, C., T. Matsui, J.M. Karp, T. Onikubo, S. Cahill, M. Brenowitz, D. Cowburn, M. Girvin, and D. ShechterDynamic intramolecular regulation of the histone chaperone nucleoplasmin controls histone binding and releaseNature Communications8(1) 221510.1038/s41467-017-02308-3(related highlight)
2017Wetterhorn, K. M., K. Gabardi, H. Michlmayr, A. Malachova, M. Busman, S. P. McCormick, F. Berthiller, G. Adam and I. Rayment. Determinants and Expansion of Specificity in a Trichothecene UDP-Glucosyltransferase from Oryza sativa. Biochemistry 56(50), 6585-6596.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Wetterhorn, K. M., K. Gabardi, H. Michlmayr, A. Malachova, M. Busman, S. P. McCormick, F. Berthiller, G. Adam and I. RaymentDeterminants and Expansion of Specificity in a Trichothecene UDP-Glucosyltransferase from Oryza sativaBiochemistry56(50), 6585-659610.1021/acs.biochem.7b01007
2017Wright, A.V., J.J. Liu, G.J. Knott, K.W. Doxzen, E. Nogales, and J.A. Doudna. Structures of the CRISPR genome integration complex. Science 357(6356) 1113-1118.ALS, SSRLStructurally Integrated Biology for the Life Sciences, Structural Molecular Biology ResourceX-ray Macromolecular Crystallography (MX)Wright, A.V., J.J. Liu, G.J. Knott, K.W. Doxzen, E. Nogales, and J.A. DoudnaStructures of the CRISPR genome integration complexScience357(6356) 1113-111810.1126/science.aao0679(feature story) (related highlight)
2017Wu, C., W. Wolf, Y. Levartovsky, H. A. Bechtel, M. C. Martin, F. Dean Toste and E. Gross. "High-spatial-resolution mapping of catalytic reactions on single particles," Nature 541(7638), 511–5.Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramSynchrotron Infrared Hyperspectral Imaging (SIHI)Wu, C., W. Wolf, Y. Levartovsky, et alHigh-spatial-resolution mapping of catalytic reactions on single particlesNature541(7638), 511-515.10.1038/nature20795(related highlight) (feature story)
2017Wu, R., R. Wilton, M. E. Cuff, M. Endres, G. Babnigg, J. N. Edirisinghe, C. S. Henry, A. Joachimiak, M. Schiffer and P. R. Pokkuluri. A novel signal transduction protein: Combination of solute binding and tandem PAS-like sensor domains in one polypeptide chain. Protein Science 26(4), 857-869.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Wu, R., R. Wilton, M. E. Cuff, M. Endres, G. Babnigg, J. N. Edirisinghe, C. S. Henry, A. Joachimiak, M. Schiffer and P. R. PokkuluriA novel signal transduction protein: Combination of solute binding and tandem PAS-like sensor domains in one polypeptide chainProtein Science26(4), 857-86910.1002/pro.3134
2017Xiao, X., H. Yang, V. Arutiunian, Y. Fang, G. Besse, C. Morimoto, B. Zirkle, and X.S. Chen. Structural determinants of APOBEC3B non-catalytic domain for molecular assembly and catalytic regulation. Nucleic Acids Research 45(12) 7494-7506ALS, APSStructural Biology Center, Structurally Integrated Biology for the Life SciencesX-ray Macromolecular Crystallography (MX)Xiao, X., H. Yang, V. Arutiunian, Y. Fang, G. Besse, C. Morimoto, B. Zirkle, and X.S. ChenStructural determinants of APOBEC3B non-catalytic domain for molecular assembly and catalytic regulationNucleic Acids Research45(12) 7494-750610.1093/nar/gkx362
2017Xiong, Y., F. Li, N. Babault, A. Dong, H. Zeng, H. Wu, X. Chen, C. H. Arrowsmith, P. J. Brown, J. Liu, M. Vedadi and J. Jin. Discovery of Potent and Selective Inhibitors for G9a-Like Protein (GLP), Lysine Methyltransferase. Journal of Medicinal Chemistry 60(5), 1876-1891.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Xiong, Y., F. Li, N. Babault, A. Dong, H. Zeng, H. Wu, X. Chen, C. H. Arrowsmith, P. J. Brown, J. Liu, M. Vedadi and J. JinDiscovery of Potent and Selective Inhibitors for G9a-Like Protein (GLP), Lysine MethyltransferaseJournal of Medicinal Chemistry60(5), 1876-189110.1021/acs.jmedchem.6b01645
2017Xiong, Y., J. Lu, J. Hunter, L. Li, D. Scott, H. G. Choi, S. M. Lim, A. Manandhar, S. Gondi, T. Sim, K. D. Westover and N. S. Gray. Covalent guanosine mimetic inhibitors of G12C KRAS. ACS Medicinal Chemistry Letters 8(1), 61-66.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Xiong, Y., J. Lu, J. Hunter, L. Li, D. Scott, H. G. Choi, S. M. Lim, A. Manandhar, S. Gondi, T. Sim, K. D. Westover and N. S. GrayCovalent guanosine mimetic inhibitors of G12C KRASACS Medicinal Chemistry Letters8(1), 61-6610.1021/acsmedchemlett.6b00373
2017Yin, Z., M. Machius, E.J. Nestler, and G. Rudenko. Activator Protein-1 redox switch controlling structure and DNA-binding. Nucleic Acids Research 45(19) 11425-11436 .APSStructural Biology Center X-ray Macromolecular Crystallography (MX)Yin, Z., M. Machius, E.J. Nestler, and G. RudenkoActivator Protein-1 redox switch controlling structure and DNA-bindingNucleic Acids Research45(19) 11425-1143610.1093/nar/gkx795
2017Zhao, S., Y. Li, D. Liu, J. Liu, Y. M. Liu, D. N. Zakharov, Q. Wu, A. Orlov, A. A. Gewirth, E. A. Stach, R. G. Nuzzo and A. I. Frenkel. Multimodal Study of the Speciations and Activities of Supported Pd Catalysts During the Hydrogenation of Ethylene. Journal of Physical Chemistry C 121(34), 18962-18972.Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramSynchrotron Infrared Hyperspectral ImagingZhao, S., Y. Li, D. Liu, J. Liu, Y. M. Liu, D. N. Zakharov, Q. Wu, A. Orlov, A. A. Gewirth, E. A. Stach, R. G. Nuzzo and A. I. FrenkelMultimodal Study of the Speciations and Activities of Supported Pd Catalysts During the Hydrogenation of EthyleneJournal of Physical Chemistry C121(34), 18962-1897210.1021/acs.jpcc.7b06270
2017Zhou, A., J. Prakash, G. T. Rohde, J. E. M. N. Klein, S. T. Kleespies, A. Draksharapu, R. Fan, Y. Guo, C. J. Cramer and L. Que. The Two Faces of Tetramethylcyclam in Iron Chemistry: Distinct Fe-O-M Complexes Derived from [FeIV(Oanti/syn), (TMC), ]2+ Isomers. Inorganic Chemistry 56(1), 518-527.Stanford Synchrotron Radiation LightsourceZhou, A., J. Prakash, G. T. Rohde, J. E. M. N. Klein, S. T. Kleespies, A. Draksharapu, R. Fan, Y. Guo, C. J. Cramer and L. QueThe Two Faces of Tetramethylcyclam in Iron Chemistry: Distinct Fe-O-M Complexes Derived from [FeIV(Oanti/syn), (TMC), ]2+ IsomersInorganic Chemistry56(1), 518-52710.1021/acs.inorgchem.6b02417
2016Brummett, A. E. and M. Dey. New mechanistic insight from substrate- and product-bound structures of the metal-dependent dimethylsulfoniopropionate lyase DddQ. Biochemistry 55(44), , 6162-6174.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Brummett, A. E. and M. DeyNew mechanistic insight from substrate- and product-bound structures of the metal-dependent dimethylsulfoniopropionate lyase DddQBiochemistry55(44), , 6162-617410.1021/acs.biochem.6b00585
2016Handing, K.B., I.G. Shabalin, O. Kassaar, S. Khazaipoul, C.A. Blindauer, A.J. Stewart, M. Chruszcz and W. Minor. "Circulatory Zinc Transport is Controlled by Distinct Interdomain Sites on Mammalian Albumins," Chemical Science 7(11) 6635-6648.Advanced Photon SourceStructural Biology Center X-ray Macromolecular Crystallography (MX)Handing, K.B., I.G. Shabalin, O. Kassaar, S. Khazaipoul, C.A. Blindauer, A.J. Stewart, M. Chruszcz, and W. MinorCirculatory zinc transport is controlled by distinct interdomain sites on mammalian albuminsChem Sci7(11)6635-664810.1039/c6sc02267g(feature story) (related highlight)
2016Kober, D.L., J.M. Alexander-Brett, C.M. Karch, C. Cruchaga, M. Colonna, M.J. Holtzman, and T.J. Brett. Neurodegenerative disease mutations in TREM2 reveal a functional surface and distinct loss-of-function mechanisms. Elife 5.APSStructural Biology Center X-ray Macromolecular Crystallography (MX)Kober, D.L., J.M. Alexander-Brett, C.M. Karch, C. Cruchaga, M. Colonna, M.J. Holtzman, and T.J. BrettNeurodegenerative disease mutations in TREM2 reveal a functional surface and distinct loss-of-function mechanismsElife510.7554/eLife.20391(feature story) (related highlight)
2016Lai, Y.T., G.L. Hura, K.N. Dyer, H.Y. Tang, J.A. Tainer, and T.O. Yeates. Designing and defining dynamic protein cage nanoassemblies in solution. Sci Adv 2(12) e1501855.ALSStructurally Integrated Biology for the Life SciencesSmall-Angle X-ray Scattering (SAXS)Lai, Y.T., G.L. Hura, K.N. Dyer, H.Y. Tang, J.A. Tainer, and T.O. YeatesDesigning and defining dynamic protein cage nanoassemblies in solutionSci Adv2(12)e150185510.1126/sciadv.1501855(feature story) (related highlight)
2016Le Gros, M.A., E.J. Clowney, A. Magklara, A. Yen, E. Markenscoff-Papadimitriou, B. Colquitt, M. Myllys, M. Kellis, S. Lomvardas, and C.A. Larabell. Soft X-Ray Tomography Reveals Gradual Chromatin Compaction and Reorganization during Neurogenesis In Vivo. Cell Rep 17(8) 2125-2136.ALSNational Center for X-Ray Tomography Soft X-ray TomographyLe Gros, M.A., E.J. Clowney, A. Magklara, A. Yen, E. Markenscoff-Papadimitriou, B. Colquitt, M. Myllys, M. Kellis, S. Lomvardas, and C.A. LarabellSoft X-Ray Tomography Reveals Gradual Chromatin Compaction and Reorganization during Neurogenesis In VivoCell Rep17(8)2125-213610.1016/j.celrep.2016.10.060(feature story) (related highlight)
2016LeGros, M. A., J. H. Chen, M. Do, G. McDermott and C. A. Larabell. Putting molecules in the picture: Using correlated light microscopy and soft X-ray tomography to study cells. Book Section 1367-1391.Advanced Light SourceNational Center for X-Ray Tomography Soft X-ray TomographyLeGros, M. A., J. H. Chen, M. Do, G. McDermott and C. A. LarabellPutting molecules in the picture: Using correlated light microscopy and soft X-ray tomography to study cellsBook Section1367-139110.1007/978-3-319-14394-1_43
2016McAndrew, R.P., N. Sathitsuksanoh, M.M. Mbughuni, R.A. Heins, J.H. Pereira, A. George, K.L. Sale, B.G. Fox, B.A. Simmons, and P.D. Adams. Structure and mechanism of NOV1, a resveratrol-cleaving dioxygenase. Proc Natl Acad Sci U S A 113(50) 14324-14329.ALSStructurally Integrated Biology for the Life Sciences X-ray Macromolecular Crystallography (MX)McAndrew, R.P., N. Sathitsuksanoh, M.M. Mbughuni, R.A. Heins, J.H. Pereira, A. George, K.L. Sale, B.G. Fox, B.A. Simmons, and P.D. AdamsStructure and mechanism of NOV1, a resveratrol-cleaving dioxygenaseProc Natl Acad Sci U S A113(50)14324-1432910.1073/pnas.1608917113(feature story) (related highlight)
2016Misasi, J., M. S.A. Gilman, M. Kanekiyo, M. Gui, A. Cagigi, S. Mulangu, D. Corti, J. E. Ledgerwood, A. Lanzavecchia, J. Cunningham, J. J. Muyembe-Tamfun, U. Baxa, B. S. Graham, Y. Xiang, N. J. Sullivan, and J. S. McLellan. 2016. "Structural and Molecular Basis for Ebola Virus Neutralization by Protective Human Antibodies," Science. 351, 1343–6.Advanced Photon SourceStructural Biology Center X-ray Macromolecular Crystallography (MX)Misasi, J., M. S.A. Gilman, M. Kanekiyo, M. Gui, A. Cagigi, S. Mulangu, D. Corti, J. E. Ledgerwood, A. Lanzavecchia, J. Cunningham, J. J. Muyembe-Tamfun, U. Baxa, B. S. Graham, Y. Xiang, N. J. Sullivan, and J. S. McLellan.Structural and molecular basis for Ebola virus neutralization by protective human antibodies. Science351, 1343-1346.10.1126/science.aad6117(related highlight) (feature story)
2016Muller, E. A., B. Pollard, H. A. Bechtel, P. van Blerkom and M. B. Raschke. 2016. "Infrared Vibrational Nanocrystallography and Nanoimaging," Science Advances 2(10), e1601006.Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramInfrared (IR) ImagingMuller, E. A., B. Pollard, H. A. Bechtel, P. van Blerkom, et alInfrared vibrational nanocrystallography and nanoimagingScience Advances2(10), e1601006.10.1126/sciadv.1601006(feature story) (related highlight)
2016Stagno, J. R., Y. Liu, Y. R. Bhandari, C. E. Conrad, S. Panja, M. Swain, L. Fan, G. Nelson, C. Li, D. R. Wendel, T. A. White, J. D. Coe, M. O. Wiedorn, J. Knoska, D. Oberthuer, R. A. Tuckey, P. Yu, M. Dyba, S. G. Tarasov, U. Weierstall, T. D. Grant, C. D. Schwieters, J. Zhang, A. R. Ferré-D'Amaré, P. Fromme, D. E. Draper, M. Liang, M. S. Hunter, S. Boutet, K. Tan, X. Zuo, X. Ji, A. Barty, N. A. Zatsepin, H. N. Chapman, J. C. H. Spence, S. A. Woodson and Y. X. Wang. Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography. Nature 541(7636), 242-246.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)Stagno, J. R., Y. Liu, Y. R. Bhandari, C. E. Conrad, S. Panja, M. Swain, L. Fan, G. Nelson, C. Li, D. R. Wendel, T. A. White, J. D. Coe, M. O. Wiedorn, J. Knoska, D. Oberthuer, R. A. Tuckey, P. Yu, M. Dyba, S. G. Tarasov, U. Weierstall, T. D. Grant, C. D. Schwieters, J. Zhang, A. R. Ferré-D'Amaré, P. Fromme, D. E. Draper, M. Liang, M. S. Hunter, S. Boutet, K. Tan, X. Zuo, X. Ji, A. Barty, N. A. Zatsepin, H. N. Chapman, J. C. H. Spence, S. A. Woodson and Y. X. WangStructures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallographyNature541(7636), 242-24610.1038/nature20599
2016Stingaciu, LR., H. O’Neill, M. Liberton, V. S. Urban, H. B. Pakrasi and M. Ohl. 2016. "Revealing the Dynamics of Thylakoid Membranes in Living Cyanobacterial Cells," Scientific Reports 6, 19627.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular Biology Small-Angle Neutron Scattering (SANS)Stingaciu, LR., O’Neill, H., Liberton, M. et al.Revealing the Dynamics of Thylakoid Membranes in Living Cyanobacterial CellsSci Rep6, 1962710.1038/srep19627(feature story) (related highlight)
2016Vandavasi, V.G., D.K. Putnam, Q. Zhang, L. Petridis, W.T. Heller, B.T. Nixon, C.H. Haigler, U. Kalluri, L. Coates, P. Langan, J.C. Smith, J. Meiler, and H. O'Neill. A Structural Study of CESA1 Catalytic Domain of Arabidopsis Cellulose Synthesis Complex Evidence for CESA Trimers. Plant Physiol 170(1) 123-135.SNS-HFIR, NSLSIISolution X-ray Scattering (SAXS), Small-Angle Neutron Scattering (SANS)Vandavasi, V.G., D.K. Putnam, Q. Zhang, L. Petridis, W.T. Heller, B.T. Nixon, C.H. Haigler, U. Kalluri, L. Coates, P. Langan, J.C. Smith, J. Meiler, and H. O'NeillA Structural Study of CESA1 Catalytic Domain of Arabidopsis Cellulose Synthesis Complex Evidence for CESA TrimersPlant Physiol170(1)123-13510.1104/pp.15.01356(related highlight)
2016Zhu, X., A.P. Hitchcock, D.A. Bazylinski, P. Denes, J. Joseph, U. Lins, S. Marchesini, H.W. Shiu, T. Tyliszczak, and D.A. Shapiro. Measuring spectroscopy and magnetism of extracted and intracellular magnetosomes using soft X-ray ptychography. Proc Natl Acad Sci U S A 113(51) E8219-E8227.ALSNational Center for X-Ray Tomography Soft X-ray Tomography, X-ray PtychographyZhu, X., A.P. Hitchcock, D.A. Bazylinski, P. Denes, J. Joseph, U. Lins, S. Marchesini, H.W. Shiu, T. Tyliszczak, and D.A. ShapiroMeasuring spectroscopy and magnetism of extracted and intracellular magnetosomes using soft X-ray ptychographyProc Natl Acad Sci U S A113(51)E8219-E822710.1073/pnas.1610260114(feature story) (related highlight)
2015

Nickels, J. D., X. Cheng, B. Mostofian, C. Stanley, B. Lindner, F. A. Heberle, S. Perticaroli, M. Feygenson, T. Egami, R. R. Standaert, J. C. Smith, D. A. A. Myles, M. Ohl and J. Katsaras. 2015. “Mechanical Properties of Nanoscopic Lipid Domains.” Journal of the American Chemical Society 137, 15772–80.

Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular Biology Small-Angle Neutron Scattering (SANS)Nickels, J.D. et al.Mechanical Properties of Nanoscopic Lipid DomainsJournal of the American Chemical Society137, 15772-1578010.1021/jacs.5b08894(related highlight)
2015Keiluweit, M., P. Nico, M.E. Harmon, J. Mao, J. Pett-Ridge, and M. Kleber. Long-term litter decomposition controlled by manganese redox cycling. Proc Natl Acad Sci U S A 112(38) E5253-5260.ALS, SSRLSynchrotron Infrared Hyperspectral Imaging, X-ray Absorption Spectroscopy (XAS), X-ray Fluorescence ImagingKeiluweit, M., P. Nico, M.E. Harmon, J. Mao, J. Pett-Ridge, and M. KleberLong-term litter decomposition controlled by manganese redox cyclingProc Natl Acad Sci U S A112(38)E5253-526010.1073/pnas.1508945112(feature story) (related highlight)
2015Kim, K.-W., et al. 2015. “Trimeric Structure of (+)-Pinoresinol-Forming Dirigent Protein at 1.95 Å Resolution with Three Isolated Active Sites,” Journal of Biological Chemistry 290, 1308–18.SSRLStructural Molecular Biology Resource X-ray Macromolecular Crystallography (MX)Kim, K.-W., et al.Trimeric Structure of (+)-Pinoresinol-Forming Dirigent Protein at 1.95 Å Resolution with Three Isolated Active SitesJournal of Biological Chemistry290, 1308–1810.1074/jbc.M114.611780(related highlight)
2015Luef, B., K. Frischkorn, K. Wrighton, et al. Diverse uncultivated ultra-small bacterial cells in groundwater. Nature Communications 6, 6372.ALSBerkeley Synchrotron Infrared Structural Biology Imaging ProgramInfrared (IR) ImagingLuef, B., K. Frischkorn, K. Wrighton, et alDiverse uncultivated ultra-small bacterial cells in groundwaterNature Communications6, 6372.10.1038/ncomms7372(feature story)
2015Michalska, K., A.D. Steen, G. Chhor, M. Endres, A.T. Webber, J. Bird, K.G. Lloyd, and A. Joachimiak. New aminopeptidase from 'microbial dark matter' archaeon. FASEB J 29(9) 4071-4079.APSStructural Biology Center X-ray Macromolecular Crystallography (MX)Michalska, K., A.D. Steen, G. Chhor, M. Endres, A.T. Webber, J. Bird, K.G. Lloyd, and A. JoachimiakNew aminopeptidase from 'microbial dark matter' archaeonFASEB J29(9)4071-407910.1096/fj.15-272906(feature story) (related highlight)
2015Nickels, J.D. et al. “Lateral organization, bilayer asymmetry, and inter-leaflet coupling of biological membranes.” Chemistry and Physics of Lipids 192, 87-99 (2015).SNS-HFIRCenter for Structural Molecular Biology Small-Angle Neutron Scattering (SANS)Nickels, J.D. et al.Lateral organization, bilayer asymmetry, and inter-leaflet coupling of biological membranesChemistry and Physics of Lipids192, 87-99DOI:10.1371/10.1016/j.chemphyslip.2015.07.012(related highlight)
2015Sontz, P.A., J.B. Bailey, S. Ahn, and F.A. Tezcan. A Metal Organic Framework with Spherical Protein Nodes Rational Chemical Design of 3D Protein Crystals. J Am Chem Soc 137(36) 11598-11601.SSRLStructural Molecular Biology Resource X-ray Macromolecular Crystallography (MX)Sontz, P.A., J.B. Bailey, S. Ahn, and F.A. TezcanA Metal Organic Framework with Spherical Protein Nodes Rational Chemical Design of 3D Protein CrystalsJ Am Chem Soc137(36)11598-1160110.1021/jacs.5b07463(feature story) (related highlight)
2014Gross, E., X.-Z. Shu, S. Alayoglu, H A. Bechtel, et al. In situ IR and X-ray high spatial-resolution microspectroscopy measurements of multistep organic transformation in flow microreactor catalyzed by Au nanoclusters. J. Am. Chem. Soc. 136(9), 3624-3629.ALSBerkeley Synchrotron Infrared Structural Biology Imaging ProgramInfrared (IR) ImagingGross, E., X.-Z. Shu, S. Alayoglu, H A. Bechtel, et alIn situ IR and X-ray high spatial-resolution microspectroscopy measurements of multistep organic transformation in flow microreactor catalyzed by Au nanoclusters.J. Am. Chem. Soc.136(9), 3624-3629.10.1021/ja412740p(feature story)
2014Hans, A., E. Bechtel, A. Muller, L., Robert, et al. Ultrabroadband infrared nanospectroscopic imaging. PNAS 111(20), 7191-7196.ALSBerkeley Synchrotron Infrared Structural Biology Imaging ProgramInfrared (IR) ImagingHans, A., E. Bechtel, A. Muller, L., Robert, et alUltrabroadband infrared nanospectroscopic imagingPNAS111(20), 7191-7196.10.1073/pnas.1400502111(feature story)
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2013Chao, F.A., A. Morelli, J.C. Haugner, 3rd, L. Churchfield, L.N. Hagmann, L. Shi, L.R. Masterson, R. Sarangi, G. Veglia, and B. Seelig. Structure and dynamics of a primordial catalytic fold generated by in vitro evolution. Nat Chem Biol 9(2) 81-83.SSRLStructural Molecular Biology Resource X-ray Absorption and Emission Spectroscopy (XAS, XES)Chao, F.A., A. Morelli, J.C. Haugner, 3rd, L. Churchfield, L.N. Hagmann, L. Shi, L.R. Masterson, R. Sarangi, G. Veglia, and B. SeeligStructure and dynamics of a primordial catalytic fold generated by in vitro evolutionNat Chem Biol9(2)81-8310.1038/nchembio.1138(feature story) (related highlight)
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2013Probst, A., H. Holman, T. DeSantis, et al. Tackling the minority sulfate-reducing bacteria in an archaea-dominated subsurface biofilm. ISME Journal  7, 635-651.ALSBerkeley Synchrotron Infrared Structural Biology Imaging ProgramInfrared (IR) ImagingProbst, A., H. Holman, T. DeSantis, et alTackling the minority sulfate-reducing bacteria in an archaea-dominated subsurface biofilmISME Journal7, 635-651.10.1038/ismej.2012.133(feature story)
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2012Westfall, C.S., C. Zubieta, J. Herrmann, U. Kapp, M.H. Nanao, and J.M. Jez. Structural basis for prereceptor modulation of plant hormones by GH3 proteins. Science 336(6089) 1708-1711.APSStructural Biology Center X-ray Macromolecular Crystallography (MX)Westfall, C.S., C. Zubieta, J. Herrmann, U. Kapp, M.H. Nanao, and J.M. JezStructural basis for prereceptor modulation of plant hormones by GH3 proteinsScience336(6089)1708-171110.1126/science.1221863(related highlight)
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2021Kim, Y., J. Wower, N. Maltseva, C. Chang, R. Jedrzejczak, M. Wilamowski, S. Kang, V. Nicolaescu, G. Randall, K. Michalska, and A. Joachimiak. "Tipiracil Binds to Uridine Site and Inhibits Nsp15 Rndoribonuclease NendoU from SARS-CoV-2," Communications Biology 4(193).APSStructural Biology Center X-ray Macromolecular Crystallography (MX)10.1038/s42003-021-01735-9(related highlight)
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2021Lemak, Sofia, et al.  "Structural and biochemical insights into CRISPR RNA processing by the Cas5c ribonuclease SMU1763 from Streptococcus mutans," J. Biol. Chem. 297 (5), 101251 (2021).APSStructural Biology Center X-ray Macromolecular Crystallography (MX)10.1016/j.jbc.2021.101251
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2021Patwardhan, A., R. Sarangi, B. Ginovska, S. Raugei, and S. W. Ragsdale. 2021. "Nickel–Sulfonate Mode of Substrate Binding for Forward and Reverse Reactions of Methyl-SCoM Reductase Suggest a Radical Mechanism Involving Long-Range Electron Transfer," Journal of the American Chemical Society 143(14), 5481–96.SSRLStructural Molecular Biology Resource X-Ray Absorption and Emission Spectroscopy (XAS, XES), X-Ray Fluorescence Imaging (XRF)10.1021/jacs.1c01086(related highlight)
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2019Wang, N., O. Rosen, L. Wang, H. L. Turner, L. J. Stevens, K. S. Corbett, C. A. Bowman, J. Pallesen, W. Shi, Y. Zhang, K. Leung, R. N. Kirchdoerfer, M. M. Becker, M. R. Denison, J. D. Chappell, A. B. Ward, B. S. Graham and J. S. McLellan. 2019. "Structural Definition of a Neutralization-Sensitive Epitope on the MERS-CoV S1-NTD." Cell Reports 28(13), 3395–405.e6.Advanced Photon SourceStructural Biology Center X-Ray Macromolecular Crystallography (MX)10.1016/j.celrep.2019.08.052

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2020Kumar, A., Basak, S., Rao, S., Gicheru, Y., Mayer, M.L., Sansom, M.S.P., and Chakrapani, S. 2020. "Mechanisms of activation and desensitization of full-length glycine receptor in lipid nanodiscs." Nature Communications 11, 3752.SSRLStanford-SLAC Cryo-EM CenterCryo-electron Microscopy and Tomography10.1038/s41467-020-17364-5
2020Pintilie, C., Zhang, K., Su, Z., Li, S., Schmid, M.F., & Chiu, W. 2020. "Measurement of atom resolvability in cryo-EM maps with Q-scores." Nat Methods 17(3):328-334.SSRLStanford-SLAC Cryo-EM CenterCryo-electron Microscopy and Tomography10.1038/s41592-020-0731-1
2019Basak, S., Gicheru, Y., Kapoor, A., Mayer, M.L., Filizola, M., Chakrapani, S. 2019. "Molecular mechanism of setron-mediated inhibition of full-length 5-HT3A receptor." Nature Communications 10, 3225.SSRLStanford-SLAC Cryo-EM CenterCryo-electron Microscopy and Tomography10.1038/s41467-019-11142-8
2020Wrapp, D., D. De Vlieger, K. S. Corbett, G. M. Torres, N. Wang, W. Van Breedam, K. Roose, L. van Schie, M. Hoffman, S. Pöhlmann, B. S. Graham, N. Callewaert, B. Schepens, X. Saelens and J. S. McLellan. 2020. “Structural Basis for Potent Neutralization of Betacoronaviruses by Single-Domain Camelid Antibodies,” Cell 181 (5), 1004–15.Advanced Photon SourceStructural Biology CenterX-Ray Macromolecular Crystallography (MX)10.1016/j.cell.2020.04.031(related highlight) (feature story)
2023Herndon, E., Richardson, J., Carrell, A. A., Pierce, E., Weston, D. 2023. "Sulfur speciation in Sphagnum peat moss modified by mutualistic interactions with cyanobacteria," New Phytologist. DOI:10.1111/nph.19476.Stanford Synchrotron Radiation LightsourceStructural Molecular Biology ResourceX-ray Flourescence10.1111/nph.19476(related highlight)
2024Murray, D. T., Ge, X., Schut, G. J., Rosenberg, D. J., Hammel, M., Bierma, J. C., Hille, R., Adams, M. W. W., Hura, G. L. 2024. "Correlating Conformational Equilibria with Catalysis in the Electron Bifurcating EtfABCX of Thermotoga maritima," Biochemistry 63(1), 128–40. DOI:10.1021/acs.biochem.3c00472.Berkeley Synchrotron Infrared Structural Biology Imaging ProgramAdvanced Light SourceSolution X-ray Scattering10.1021/acs.biochem.3c00472(related highlight)
2023Yang, Z., Bhagia, S., O'Neill, H., Evans, B. R., Ragauskas, A. J., Davison, B. H., Pingali, S. V. 2023. “Deconvoluting Structures of Component Plant Biopolymers Using Deuterium-Labeled Brassica oleracea Stems,” ACS Sustainable Chemistry & Engineering 11, 17238–48. DOI:10.1021/acssuschemeng.3c04076.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering, Synchrotron Infrared Hyperspectral Imaging10.1021/acssuschemeng.3c04076(related highlight)
2023Shah, R. S., Senanayake, M., Zhang, H.-H., Pu, Y., Biswal, A. K., Pingali, S. V., Davison, B. H., O'Neill, H. 2023. “Evidence for Lignin–Carbohydrate Complexes from Studies of Transgenic Switchgrass and a Model Lignin–Pectin Composite,” ACS Sustainable Chemistry and Engineering 11(44), 15941–50. DOI:10.1021/acssuschemeng.3c04322.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering, Solution X-ray Scattering, Synchrotron Infrared Hyperspectral Imaging10.1021/acssuschemeng.3c04322(related highlight)
2023Li, Z., Wang, S., Nattermann, U., Bera, A. A., Borst, A. J., Yaman, M. Y., Bick, M. J., Yang, E. C., Sheffler, W., Lee, B., Seifert, S., Hura, G. L., Nguyen, H., Kang, A., Dalal, R., Lubner, J. M., Hsia, Y., Haddox, H., Courbet, A., Dowling, Q., Miranda, M., Favor, A., Etemadi. A., Edman, N. I., Yang, W., Weidle, C., Sankaran, B., Negahdari, B., Ross, M. B., Ginger, D. S., Baker, D. 2023. “Accurate computational design of three-dimensional protein crystals,” Nature Materials 22, 1556–63. DOI:10.1038/s41563-023-01683-1.Advanced Light SourceStructurally Integrated Biology for the Life SciencesSolution X-ray Scattering10.1038/s41563-023-01683-1(related highlight)
2023Dementiev, A., Lillington, S. P., Jin, S., Kim, Y., Jedrzejczak, R., Michalska, K., Joachimiak, A., O'Malley, M. A. 2023. “Structure and enzymatic characterization of CelD endoglucanase from the anaerobic fungus Piromyces finnis,” Applied Microbiology and Biotechnology 107, 5999–6011. DOI:10.1007/s00253-023-12684-0Advanced Photon SourceeBERlight, Structural Biology CenterX-ray Macromolecular Crystallography10.1007/s00253-023-12684-0(related highlight)
2023Witkowska, M., Jedrzejczak, R. P., Joachimiak, A., Cavdar, O., Makankowska, A., Skowron, P. M., Zylicz-Stachula, A. 2023. “Promising Approaches for the Assembly of the Catalytically Cctive, Recombinant Desulfomicrobium baculatum Hydrogenase with Substitutions at the Active Site,” Microbial Cell Factories 22, 134. DOI:10.1186/s12934-023-02127-w.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography10.1186/s12934-023-02127-w(related highlight)
2023Engel, M., Noël, V., Pierce, S., Kovarik, L., Kukkadapu, K., Lezama Pacheco, J. S., Qafoku, O., Runyon, J. R., Chorover, J., Zhou, W., Cliff, J., Boye, K., Bargar, J. R. 2023. “Structure and Composition of Natural Ferrihydrite Nanocolloids in Anoxic Groundwater,” Water Research238 (119990). DOI:10.1016/j.watres.2023.119990.Environmental Molecular Sciences Laboratory, Stanford Synchrotron Radiation LightsourceStanford-SLAC Cryo-EM CenterCryo-Electron Microscopy, X-ray Absorption and Emission Spectroscopy10.1016/j.watres.2023.119990(related highlight)
2023Can, M., Abernathy, M. J., Wiley, S., Griffith, C., James, C. D., Xiong, J., Guo, Hoffman, B. M., Ragsdale, S. W., Sarangi, R. 2023. “Characterization of Methyl- and Acetyl-Ni Intermediates in Acetyl CoA Synthase Formed during Anaerobic CO2 and CO Fixation,” Journal of the American Chemistry Society 145(25), 13696–708. DOI:10.1021/jacs.3c01772.Stanford Synchrotron Radiation LightsourceStructural Molecular Biology ResourceX-ray Absorption and Emission Spectroscopy10.1021/jacs.3c01772(related highlight)
2023Hammel, M., Fan, Y., Sarode, A., Byrnes, A. E., Zang, N., Kou, P., Nagapudi, K., Leung, D., Hoogenraad, C. C., Chen, T., Yen. C.-W., Hura, G. L. 2023. “Correlating the Structure and Gene Silencing Activity of Oligonucleotide-Loaded Lipid Nanoparticles Using Small-Angle X‑Ray Scattering,” ACS Nano 17 (12), 11454-11465. DOI:10.1021/acsnano.3c01186.Advanced Light SourceStructurally Integrated Biology for the Life SciencesCryo-Electron Microscopy, Solution X-ray Scattering10.1021/acsnano.3c01186(related highlight)
2021Tenchov, R., Bird, R., Curtze, A. E., Zhou, Q. et al. 2021. “Lipid Nanoparticles: From Liposomes to mRNA Vaccine Delivery, a Landscape of Research Diversity and Advancement,” ACS Nano 15 (11), 16982–7015. DOI:10.1021/acsnano.1c04996.Advanced Light SourceStructurally Integrated Biology for the Life SciencesCryo-Electron Microscopy, Solution X-ray Scattering10.1021/acsnano.1c04996(related highlight)
2023Richardson, J. A., Anderton, C. R., and A. Bhattacharjee. 2023. “Saprotrophic Fungus Induces Microscale Mineral Weathering to Source Potassium in a Carbon-Limited Environment,” Minerals 13 (5), 641. DOI:10.3390/min13050641.Environmental Molecular Sciences Laboratory, Stanford Synchrotron Radiation LightsourceStructural Molecular Biology ResourceX-ray Fluorescence Imaging10.3390/min13050641(related highlight)
2023Holman, E. A., Krishnan, H., Holman, D. R., Holman, H.-Y., Sternberg, P. W. 2023. “Toward Implementing Autonomous Adaptive Data Acquisition for Scanning Hyperspectral Imaging of Biological Systems,” Applied Physics Reviews 10, 011319. DOI:10.1063/5.0123278.Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramSolution X-ray Scattering, Synchrotron Infrared Hyperspectral Imaging, X-ray Fluorescence Imaging10.1063/5.0123278(related highlight)
2023Hicks, A., Abraham, P., Leite, W., Zhang, Q., Weiss, K. L., O'Neill, H., Petridis, L., Smith, J. C. 2023. “SCOMAP-XD: Atomistic Deuterium Contrast Matching for Small-Angle Neutron Scattering in Biology,” Acta Crystallographica Section D 79, 420–34. DOI:10.1107/S2059798323002899.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering10.1107/S2059798323002899(related highlight)
2023Liang, X., Johs, A., Abernathy, M. J., Zhao, J., Du, H., Ku., Zhang, L., Zhu, N., Yin, X., Brooks, S., Zhao, L., Sarangi, R., Pierce, E. M., Gu, B. 2023. "High Methylation Potential of Mercury Complexed with Mixed Thiolate Ligands by Geobacter sulfurreducens PCA," Geochimica et Cosmochimica Acta 342, 74–83. DOI:10.1016/j.gca.2022.12.008.Stanford Synchrotron Radiation LightsourceStructural Molecular Biology ResourceX-ray Absorption and Emission Spectroscopy10.1016/j.gca.2022.12.008(related highlight)
2023Gurumoorthy, V., Shrestha, U. R., Zhang, Q., Pingali, S. V., Boder, E. T., Urban, V. S., Smith, J. C., Petridis, L., O'Neill, H. 2023. “Disordered Domain Shifts the Conformational Ensemble of the Folded Regulatory Domain of the Multidomain Oncoprotein c-Src,” Biomacromolecules 24(2), 714–23. DOI:10.1021/acs.biomac.2c01158.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering10.1021/acs.biomac.2c01158(related highlight)
2023Narayanasamy, S. R., Vasireddi, R., Holman, H.-Y. N., Trebbin, M. 2023. "A sui generis Whipping Instability Based Self-Sequencing Multi-Monodisperse 2D Sprays From an Anisotropic Microfluidic Liquid Jet Device," Cell Reports Physical Science4(1), 101221. DOI:10.1016/j.xcrp.2022.101221.Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramCryo-Electron Microscopy, Solution X-ray Scattering, Synchrotron Infrared Hyperspectral Imaging, X-ray Absorption and Emission Spectroscopy, X-ray Fluorescence Imaging, X-ray Macromolecular Crystallography10.1016/j.xcrp.2022.101221(related highlight)
2022Bhattacharjee, A., Qafoku, O., Richardson, J. A., Anderson, L. N., Schwarz, K., Bramer, L. M., Lomas, G. X., Orton, D. J., Zhu, Z., Engelhard, M. H., Bowden, M. E., Nelson, W. C., Jumpponen, A., Jansson, J. K., Hofmockel, K. S., Anderton, C. R. 2022. "A Mineral-Doped Micromodel Platform Demonstrates Fungal Bridging of Carbon Hot Spots and Hyphal Transport of Mineral-Derived Nutrients," Mycology 7 (6). DOI:10.1128/msystems.00913-22Environmental Molecular Sciences Laboratory, Stanford Synchrotron Radiation LightsourceStructural Molecular Biology ResourceX-ray Fluorescence Imaging10.1128/msystems.00913-22(related highlight)
2022Schröder, G.C., O'Dell, W. B., Webb, S. P., Agarwal, P. K., Meilleur, F. 2022. “Capture of Activated Dioxygen Intermediates at the Copper-Active Site of a Lytic Polysaccharide Monooxygenase,” Chemical Science 13, 13303. DOI:10.1039/D2SC05031E.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologyNeutron Macromolecular Crystallography10.1039/D2SC05031E(related highlight)
2022Tan, L., Smith, M. D., Scott, H. L., Yahya, A., Elkins, J. G., Katsaras, J., O'Neill, H, Pingali, S. V., Smith, J. C., Davison, B. H., Nickels, J. D.  2022. "Modeling the partitioning of amphiphilic molecules and co-solvents in biomembranes," Journal of Applied Crystallography 55, 1401-1412. DOI:10.1107/S1600576722008998.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering10.1107/S1600576722008998(related highlight)
2022Pattammattel, A., Tappero, R., Gavrilov, D., Zhang, H., Aronstein, P., Forman, H. J., O'Day, P. A., Yan, H., Chu, Y. S. 2022. "Multimodal X-ray Nano-spectromicroscopy Analysis of Chemically Heterogeneous Systems," Metallomics 14(10), mfac078. DOI:10.1093/mtomcs/mfac078.National Synchrotron Light Source IICenter for BioMolecular StructureX-ray Absorption and Emission Spectroscopy, X-ray Fluorescence Imaging10.1093/mtomcs/mfac078(related highlight)
2022Brady, N. G., Qian, S., Nguyen, J., O'Neill, H. M., Bruce, B. D. 2022. "Small Angle Neutron Scattering and Lipidomic Analysis of a Native, Trimeric PSI-SMALP from a Thermophilic Cyanobacteria," BBA Bioenergetics, 1863(7). DOI:10.1016/j.bbabio.2022.148596.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering, Solution X-ray Scattering10.1016/j.bbabio.2022.148596(related highlight)
2022Wu, R., Smith, C. A., Buchko, G. W., Blaby, I. K., Paez-Espino, D., Kyrpides, N. C., Yoshikunu, Y., McDermott, J. E., Hofmockel, K. A., Cort, J. C., Jansson, J. K. 2022. "Structural Characterization of a Soil Viral Auxiliary Metabolic Gene Product—A Functional Chitosanase,"Nature Communications 13, 5485. DOI:10.1038/s41467-022-32993-8.Environmental Molecular Sciences Laboratory, Stanford Synchrotron Radiation LightsourceStructural Molecular Biology ResourceX-ray Macromolecular Crystallography10.1038/s41467-022-32993-8(related highlights)
2022Liu, A. K., Pereira, J. H., Kehl, A. J., Rosenberg, D. J., Orr, D. J., Chu, S. K. S., Banda, D. M., Hammel, M., Adams, P. D., Siegel, J. B., Shih, P. M. 2022. "Structural Plasticity Enables Evolution and Innovation of RuBisCO Assemblies," Science Advances 8 (34). DOI:10.1126/sciadv.adc9440.Advanced Light SourceStructurally Integrated Biology for the Life SciencesSolution X-ray Scattering, X-ray Macromolecular Crystallography10.1126/sciadv.adc9440(related highlight)
2022Liang, L., Wang, Y.-Y., Bhagia, S., Sethuraman, V., Yang, Z., Meng, X., Bryant, N., Petridis, L., Smith, J. C., Pingali, S. V., Gallego, N. C., Pu, Y., Evans, B. R., O'Neill, H. M., Davison, B. H., Ragauskas, A. J. 2022. "Chemical and Morphological Structure of Transgenic Switchgrass Organosolv Lignin Extracted by Ethanol, Tetrahydrofuran, and γ-Valerolactone Pretreatments," ACS Sustainable Chemical Engineering, 10(28), 9041–52. DOI:10.1021/acssuschemeng.2c00948.National Synchrotron Light Source IICenter for BioMolecular StructureSolution X-ray Scattering10.1021/acssuschemeng.2c00948(related highlight)
2022Courbet, A., Hansen, J., Hsia, Y., Bethel, N., Park, Y.-J., Xu, C., Moyer, A., Boyken, S. E., Nattermann, U., Nagarajan, D., Silva, D.-A., Sheffler, W., Quispe, J., Nord, A., King, N., Bradley, P., Veesler, D., Kollman, J., Baker, D. 2022. "Computational design of mechanically coupled axle-rotor protein assemblies," Science, 376(6591), 383–90. DOI:10.1126/science.abm1183.Advanced Light SourceStructurally Integrated Biology for the Life SciencesCryo-Electron Microscopy, Solution X-ray Scattering10.1126/science.abm1183(related highlight)
2022Loconte, V., Singla, J., Li, A., Chen, J.-H., Ekman, A., McDermott, G., Sali, A., Le Gros, M., White, K. L., Larabell, C. A. 2022. "Soft X-ray Tomography to Map and Quantify Organelle Interactions at the Mesoscale," Structure 30, 1–12. DOI:10.1016/j.str.2022.01.006.Advanced Light SourceNational Center for X-Ray TomographySoft X-ray Tomography10.1016/j.str.2022.01.006(related highlight)
2022DeMirci, H., Rao, Y., Stoffel, G. M., Vögeli, B., Schell, K., Gomez, A., Batyuk, A., Gati, C., Sierra, R. G., Hunter, M. S., Han Dao, E., Ciftci, H. I., Hayes, B., Poitevin, F., Li, P.-N., Kaur, M., Tono, K., Saez, D. A., Deutsch, S., Yoshikuni, Y., Grubmüller, H., Erb, T. J., Vöhringer-Martinez, E., Wakatsuki, S. 2022. "Intersubunit coupling enables fast CO2-fixation by reductive carboxylases," ACS Central Science. DOI:10.1021/acscentsci.2c00057.Advanced Photon Source, Stanford Synchrotron Radiation LightsourceStructural Molecular Biology ResourceX-ray Macromolecular Crystallography10.1021/acscentsci.2c00057(related highlight)
2022Sestok, A. E., Brown, J. B., Obi, J. O., O'Sullivan, S. M., Garcin, E. D., Deredge, D. J., Smith, A. T. 2022. "A Fusion of the Bacteroides fragilis Ferrous Iron Import Proteins Reveals a Role for FeoA in Stabilizing GTP-bound FeoB," The Journal of Biological Chemistry 298(4). DOI:10.1016/j.jbc.2022.101808.Advanced Light Source, Advanced Photon SourceStructurally Integrated Biology for the Life SciencesSolution X-ray Scattering10.1016/j.jbc.2022.101808(related highlight)
2022Liu, J., Tian, J., Perry, C., Lukowski, A. L., Doukov, T.  I., Narayan, A. R. H., Bridwell-Rabb, J. 2022. "Design Principles for Site-Selective Hydroxylation by a Rieske Oxygenase." Nature Communications 13, 255. DOI:10.1038/s41467-021-27822-3.Stanford Synchrotron Radiation LightsourceStructural Molecular Biology ResourceX-ray Macromolecular Crystallography10.1038/s41467-021-27822-3(related highlight)
2022Yang, Z., Foston, M. B., O'Neill, H., Urban, S. V., Ragauskas, A., Evans, B. R., Davison, B. H., Pingali, S. V. 2022. "Structural Reorganization of Noncellulosic Polymers Observed In Situ During Dilute Acid Pretreatment by Small-Angle Neutron Scattering," ACS Sustainable Chemistry & Engineering 10(1), 314–22. DOI:10.1021/acssuschemeng.1c06276.Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular BiologySmall-Angle Neutron Scattering10.1021/acssuschemeng.1c06276(related highlight)
2021Bagde, S. R., Mathews, I. I., Fromme, J. C, Kim, C.-Y. 2021. "Modular Polyketide Synthase Contains Two Reaction Chambers that Operate Asynchronously," Science 374(6568), 723–9. DOI:10.1126/science.abi8532.Advanced Light Source, Advanced Photon Source, Stanford Synchrotron Radiation LightsourceStanford-SLAC Cryo-EM Center, Structural Molecular Biology ResourceCryo-Electron Microscopy, X-ray Macromolecular Crystallography10.1126/science.abi8532(related highlight)
2021Novikova, I. V., Zhou, M., Du, C., Parra, M., Kim, D. N., VanAernum, Z. L., Shaw, J. B., Hellmann, H., Wysocki, V. H., Evans, J. E. 2021. "Tunable Heteroassembly of a Plant Pseudoenzyme-Enzyme Complex," ACS Chemical Biology 16(11), 2315–25. DOI:10.1021/acschembio.1c00475Environmental Molecular Sciences LaboratoryCryogenic Transmission Electron Microscopy at EMSLCryo-Electron Microscopy10.1021/acschembio.1c00475(related highlight)
2021Tetter, S., Terasaka, N., Steinauer, A., Bingham, R. J., Clark, S., Scott, A. J. P., Patel, N., Leibundgut, M., Wroblewski, E., Ban, N., Stockley, P. G., Twarock, R., Hilvert, D. 2021. "Evolution of a Virus-Like Architecture and Packaging Mechanism in a Repurposed Bacterial Protein," Science 372(6547), 1220–24. DOI:10.1126/science.abg2822.National Synchrotron Light Source IICenter for BioMolecular StructureX-ray Footprinting10.1126/science.abg2822(related highlight)
2021Lainé, M., Fanning, S. W., Chang, Y.-F., Green, B., Greene, M. E., Komm, B., Kurleto, J. D., Phung, L., Greene, G. L. “Lasofoxifene as a Potential Treatment for Therapy-Resistant ER-Positive Metastatic Breast Cancer,” Breast Cancer Research 23, 54. DOI:10.1186/s13058-021-01431-w.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography10.1186/s13058-021-01431-w(related highlight)
2021Roy, R. N., Hendriks, K., Kopec, W., Abdolvand, S., Weiss, K. L., de Groot, B L., Lange, A., Sun, H.,  Coates, L. 2021. “Structural Plasticity of the Selectivity Filter in a Nonselective Ion Channel,” IUCrJ 8(3), 421–30. DOI:10.1107/S205225252100213X.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography10.1107/S205225252100213X(related highlight)
2021Higgins, M.A., G. Tegl, S. S. MacDonald, G. Arnal, H. Brumer, S. G. Withers, and K. S. Ryan. 2021. "N-Glycan Degradation Pathways in Gut- and Soil-Dwelling Actinobacteria Share Common Core Genes," ACS Chemical Biology 16(4), 701–11. DOI:10.1021/acschembio.0c00995.Stanford Synchrotron Radiation LightsourceStructural Molecular Biology ResourceX-ray Macromolecular Crystallography10.1021/acschembio.0c00995(related highlight)
2021Zhang, C.-H., E. A. Stone, M. Deshmukh, J. A. Ippolito, M. M. Ghahremanpour, J. Tirado-Rives, K. A. Spasov, S. Zhang, Y. Takeo, S. N. Kudalkarm, Z. Liang, F. Isaacs, B. Lindenbach, S. J. Miller, K. S. Anderson, and W. L. Jorgenson. 2021. "Potent Noncovalent Inhibitors of the Main Protease of SARS-CoV-2 from Molecular Sculpting of the Drug Perampanel Guided by Free Energy Perturbation Calculations," ACS Central Science 7(3), 467–75. DOI:10.1021/acscentsci.1c00039.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography10.1021/acscentsci.1c00039(related highlight)
2020Lim, H., M. L. Baker, R. E. Cowley, S. Kim, M. Bhadra, M. A. Siegler, T. Kroll, D. Sokaras, T.-C. Weng, D. R. Biswas, D. M. Dooley, K. D. Karlin, B. Hedman, K. O. Hodsgon and D. I. Solomon. 2020. “Kβ X‐ray Emission Spectroscopy as a Probe of Cu(I) Sites: Application to the Cu(I) Site in Preprocessed Galactose Oxidase,” Inorganic Chemistry 59(22), 16567–81. DOI:10.1021/acs.inorgchem.0c02495.Stanford Synchrotron Radiation LightsourceStructural Molecular Biology ResourceX-ray Absorption and Emission Spectroscopy10.1021/acs.inorgchem.0c02495(related highlight)
2020Han, K., J. B. Bailey, L. Zhang and F. A. Tezcan. 2020. “Anisotropic Dynamics and Mechanics of Macromolecular Crystals Containing Lattice-Patterned Polymer Networks,” Journal of American Chemical Society 142(45), 19402–410. DOI:10.1021/jacs.0c10065.Stanford Synchrotron Radiation LightsourceStructural Molecular Biology ResourceX-ray Absorption and Emission Spectroscopy10.1021/jacs.0c10065(related highlight)
2020Hurlburt, N.K., E. Seydoux, Y.-H. Wan, V. V. Edara, A. B. Stuart, J. Feng, M. S. Suther, A. T. McGuire, L. Stamatatos and M. Pancera. “Structural Basis for Potent Neutralization of SARS-CoV-2 and Role of Antibody Affinity Maturation,” Nature Communications 11, 5413. DOI:10.1038/s41467-020-19231-9.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography10.1038/s41467-020-19231-9(related highlight)
2020Zhu, P., X.-H. Yu, C. Wang, Q. Zhang, W. Liu, S. McSweeney, J. Shanklin, E. Lam and Q. Liu. "Structural Basis for Ca2+-Dependent Activation of a Plant Metacaspase," Nature Communications 11 (1), 2249. DOI:10.1038/s41467-020-15830-8.National Synchrotron Light Source IICenter for BioMolecular StructureX-ray Macromolecular Crystallography10.1038/s41467-020-15830-8(related highlight)
2020Cho, J.-H., B. Zhao, J. S.hi, N. Savage, Q. Shen, J. Byrnes, L. Yang, W. Hwang and P. Li. 2020. "Molecular Recognition of a Host Protein by NS1 of Pandemic and Seasonal Influenza A Viruses," Proceedings of the National Academy of Science USA 117(12), 6550–8. DOI:10.1073/pnas.1920582117.National Synchrotron Light Source IICenter for BioMolecular StructureSolution X-ray Scattering, X-ray Macromolecular Crystallography10.1073/pnas.1920582117(related highlight)
2020Wang, S.-T., M. A. Gray, S. Xuan, Y. Lin, J. Byrnes, A. I. Nguyen, N. Todorova, M. M. Stevens, C. R. Bertozzi, R. N. Zuckermann and O. Gang. 2020. “DNA Origami Protection and Molecular Interfacing Through Engineered Sequence-Defined Peptoids.” Proceedings of the National Academy of Sciences, 117(12) 6339–48. DOI:10.1073/pnas.1919749117.National Synchrotron Light Source IICenter for BioMolecular StructureSolution X-ray Scattering10.1073/pnas.1919749117(related highlight)
2018Allwood, A., M. T. Rosing, D. T. Flannery, J. A. Hurowitz and C. M. Heirwegh.  2018. “Reassessing Evidence of Life in 3,700-million-year-old Rocks of Greenland,” Nature 563, 241.National Synchrotron Light Source IICenter for BioMolecular StructureX-ray Fluorescence Imaging10.1038/s41586-018-0610-4(related highlight)
2018VanderSchee, C. R., D. Kuter,  A. M. Bolt,  F.-C. Lo, R. Feng, J. Thieme, Y. K. Chen-Wiegart, G. Williams, K. K. Mann and D. S. Bohle. 2018. “Accumulation of Persistent Tungsten in Bone as in situ Generated Polytungstate,” Communications Chemistry 1, 8. DOI:10.1038/s42004-017-0007-6.National Synchrotron Light Source IICenter for BioMolecular StructureX-ray Fluorescence Imaging10.1038/s42004-017-0007-6(related highlight)
2017Battles, M., V. Más, E. Olmedillas, O. Cano, M. Vázquez, L. Rodríguez, J. Melero and J. McLellan. 2017. “Structure and Immunogenicity of Pre-fusion-stabilized Human metapneumovirus F Glycoprotein,” Nature Communications 8, 1528. DOI:10.1038/s41467-017-01708-9.National Synchrotron Light Source IICenter for BioMolecular StructureX-ray Macromolecular Crystallography10.1038/s41467-017-01708-9(related highlight) (feature story)
2017H. Popelka, A. Damasio, J. E. Hinshaw, D. J. Klionsky and M. J. Ragusa. 2017. “Structure and Function of Yeast Atg20, a Sorting Nexin that Facilitates Autophagy Induction,” PNAS 114. E10112–E10121. DOI:10.1073/pnas.1708367114.National Synchrotron Light Source IICenter for BioMolecular StructureSolution X-ray Scattering10.1073/pnas.1708367114(related highlight)
2024Coale, T. H., Loconte, V., Turk-Kub, K. A., Vanslembrouck, B., Mak, W. K. E., Cheung, S., Ekman, A., Chen, J. H., Hagino, K., Takano, Y., Nishimura, T., Adachi, M., Le Gros, M., Larabell, C., Zehr, J. P. 2024. "Nitrogen-Fixing Organelle in a Marine Alga," Science 384(6692), 217-22. (related highlight)Advanced Light SourceNational Center for X-Ray Tomographysoft X-ray tomography10.1126/science.adk1075
2023Jeoh, T., Nill J. D., Zhao, W., Narayanasamy, S. R., Chen, L., and Holman, H-Y. N. 2023. “Spatiotemporal Dynamics of Cellulose During Enzymatic Hydrolysis Studied by Infrared Spectromicroscopy,” Green Chemistry 26, 396-411. (related highlight)Advanced Light SourceBerkeley Synchrotron Infrared Structure Biology Imaging ProgramSR-FTIR10.1039/D3GC03279E
2017Cartier-Michaud, A., A.-L. Bailly, S. Betzi, X. Shi, J.-C. Barbara Cascella, S. G. Lee, S. Singh, J. M. Jez, L. M. Miric. 2017. "The small molecule JIB-04 disrupts O2 binding in the Fe-dependent histone demethylase KDM4A/JMJD2A," Chem. Community 53, 2174–77.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)10.1039/C6CC09882G
2017Harshbarger, W. S. Gondi, S. B. Ficarro, J. Hunter, D. Udayakumar, Z. Hou, L. Su, J. Pei, N. V. Grishin, H. Zhang. 2017. "Crystal Structure of the CLOCK Transactivation Domain Exon19 in Complex with a Repressor," Structure 25(8), 1187–94.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)10.1016/j.str.2017.05.023
2017Tocilj, A., K. F. On, Z. Yuan, J. Sun, E. Elkayam, H. Li, B. Stillman, and L. Joshua-Tor. 2017. "Structure of the active form of human origin recognition complex and its ATPase motor module," eLIFE J. 6, e20818-1-e20818-23.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)10.7554/eLife.20818
2020Hunmin, J. and S. Lee. 2020. "Promutagenic Bypass of 7,8-dihydro-8-oxoadenine by Translesion Synthesis DNA Polymerase Dpo4," Biochem. J. 477 (15), 2859-2871.Advanced Photon SourceStructural Biology CenterX-ray Macromolecular Crystallography (MX)10.1042/BCJ20200449
2021Noack, M. M., P. H. Zwart, D. M. Ushizima, M. Fukuto, K. G. Yager, K. C. Elbert, C. B. Murray, A. Stein, G. S. Doerk, E. H. R. Tsai, R. Li, G. Freychet, M. Zhernenkov, H.-Y. N. Holman, S. Lee, L. Chen, E. Rotenberg, T. Weber, Y. Le Goc, M. Boehm, P. Steffens, P. Mutti, and J. A. Sethian. 2021. "Gaussian Processes for Autonomous Data Acquisition at Large-Scale X-Ray and Neutron Scattering Facilities," Nature Physics Review 3, 685-97.Advanced Light SourceBerkeley Synchrotron Infrared Structural Biology Imaging ProgramSynchrotron Infrared Hyperspectral Imaging10.1038/s42254-021-00345-y
2019Wuxian, S. 2019. "Two New Beamlines at NSLS-II for Micro-focus, Serial and Highly automated Macromolecular Crystallography," Acta Cryst Sect A, 75(a1), a231-a231.National Synchrotron Light Source IICenter for BioMolecular StructureX-ray Macromolecular Crystallography (MX)10.1107/S0108767319097721
2017Nguyen, D.M.N., G. J. Schut, O. A. Zadvornyy, M. Tokmina-Lukaszewska, S. Poudel, G. L. Lipscomb, L. A. Adams, J. T. Dinsmore, W. J. Nixon, E. S. Boyd, B. Bothner, J. W. Peters and M. W. W. Adams, "Two Functionally Distinct NADP+-dependent Ferredoxin Oxidoreductases Maintain the Primary Redox Balance of Pyrococcus furiosus", J. Biol. Chem. 292, 14603. DOI:10.1074/jbc.M117.79417. [PMID: 28705933; PMCID: PMC5582851]Stanford Synchrotron Radiation Lightsource10.1074/jbc.M117.79417
2018Choi, J., G. Indrisiunaite, H. DeMirci, K.-W. Ieong, J. Wang, A. Petrov, A. Prabhakar, G. Rechavi, D. Dominissini, C. He, M. Ehrenberg and J. D. Puglisi. 2018. "2′-O-Methylation in mRNA Disrupts tRNA Decoding during Translation Elongation", Nat. Struct. Mol. Biol. 25, 208. DOI:10.1038/s41594-018-0030-z. [PMID: 29459784; PMCID: PMC5840002]Stanford Synchrotron Radiation Lightsource10.1038/s41594-018-0030-z
2019Chang, J., M. G. Romei and S. G. Boxer. 2019. "Structural Evidence of Photoisomerization Pathways in Fluorescent Proteins", J. Am. Chem. Soc. 141, 15504. DOI:10.1021/jacs.9b08356. [PMID: 31533429; PMCID: PMC7036281]Stanford Synchrotron Radiation Lightsource10.1021/jacs.9b08356
2020Artz, J. H., O. A. Zadvornyy, D. W. Mulder, S. M. Keable, A. E. Cohen, M. W. Ratzloff, S. G. Williams, B. Ginovska, N. Kumar, J. Song, S. E. McPhillips, C. Davidson, A. Y. Lyubimov, N. Pence, G. J. Schut, A. K. Jones, S. M. Soltis, M. Adams, S. Raugei, P. W. King and J. W. Peters. 2020. "Tuning Catalytic Bias of Hydrogen Gas Producing Hydrogenases", J. Am. Chem. Soc. 142, 1227. DOI:10.1021/jacs.9b08756.Stanford Synchrotron Radiation Lightsource10.1021/jacs.9b08756
2018Smallwood CR, Chrisler W, Chen J-H, Patello E, Thomas M, Boudreau R, Ekman A, Wang H, McDermott G, Evans JE. (2018). "Ostreococcus tauri is a high-lipid content green algae that extrudes clustered lipid droplets," bioRxiv, 249052. DOI:10.1101/249052.Advanced Light SourceNational Center for X-Ray Tomography Soft X-ray Tomography10.1101/249052
2018Smallwood CR, Chen J-H, Kumar N, Chrisler W, Purvine SO, Kyle JE, Nicora CD, Boudreau R, Ekman A, Hixson KK, Moore RJ, McDermott G, Cannon WR, Evans JE. (2018). "Integrated systems biology and imaging of the smallest free-living eukaryote Ostreococcus tauri," J bioRxiv, 293704. DOI:10.1101/293704 .Advanced Light SourceNational Center for X-Ray Tomography Soft X-ray Tomography10.1101/293704
2017W. B. O'Dell, P.K. Agarwal, F. Meilleur. 2017. Oxygen Activation at the Active Site of a Fungal Lytic Polysaccharide Monooxygenase," Angewandte chemie, 56(3), 767-770Spallation Neutron Source/High Flux Isotope ReactorCenter for Structural Molecular Biology10.1002/anie.201610502
2024Grosjean, N.; Yee, E. F.; Kumaran, D.; Chopra, K.; Abernathy, M.; Biswas, S.; Byrnes, J.; Kreitler, D. F.; Cheng, J.-F.; Ghosh, A.; Almo, S. C.; Iwai, M.; Niyogi, K. K.; Pakrasi, H. B.; Sarangi, R.; van Dam, H.; Yang, L.; Blaby, I. K.; and Blaby-Haas, C. E. 2024. “A Hemoprotein with a Zinc-Mirror Heme Site Ties Heme Availability to Carbon Metabolism in Cyanobacteria.” Nature Communications 15(1), 3167. DOI: 10.1038/s41467-024-47486-z.National Synchrotron Light Source II, Stanford Synchrotron Radiation LightsourceCenter for BioMolecular Structure, Structural Molecular Biology ResourceSolution X-ray Scattering, X-ray Absorption and Emission Spectroscopy, X-ray Macromolecular Crystallography10.1038/s41467-024-47486-z(related highlight)
2024Richardson, J. A., Kim, H., Kas, J. J., You, X., Andersen, A., Ginovska, B., Bhattacharjee, A., and Sarangi, R. 2024. “X-ray Absorption Spectroscopy and Theoretical Investigations of the Effect of Extended Ligands in Potassium Organic Matter Interaction.” The Journal of Chemical Physics 160(4). DOI:10.1063/5.0183603. Environmental Molecular Sciences Laboratory, Stanford Synchrotron Radiation LightsourceStructural Molecular Biology ResourceX-ray Absorption and Emission Spectroscopy10.1063/5.0183603(related highlight)